Pregenerated sensors for LINC02500 (Homo sapiens)
Ensembl gene IDs: ENSG00000249460Ensembl transcript IDs: ENST00000512547.1, ENST00000668509.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GTGGTATTTGAATATAATGGTGTCTGGTATTCTGGGACTCCTAGCTaGGCGCCCAGCAGGCAGGAGGGTTCCCACACATGCACTTGCTCA | + |
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Preference number: 5 (lower is better) Translates to: VVFEYNGVWYSGTPS*APSRQEGSHTCTCS Trigger: TGAGCAAGTGCATGTGTGGGAACCCTCCTGCCTGCTGGGCGCTCAGCTAGGAGTCCCAGAATACCAGACACCATTATATTCAAATACCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000512547.1 ENST00000668509.1 |
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| CDS GCA 90 bp | GCACACAGTCGGAACGTGAGTGCTTCAGTGAGGAAGTGTTTCTCATaGCTCTGGGTCTTTACTCTTGTTGCTGCTGATATACACTTCCAG | + |
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Preference number: 5 (lower is better) Translates to: AHSRNVSASVRKCFS*LWVFTLVAADIHFQ Trigger: CTGGAAGTGTATATCAGCAGCAACAAGAGTAAAGACCCAGAGGCATGAGAAACACTTCCTCACTGAAGCACTCACGTTCCGACTGTGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000512547.1 ENST00000668509.1 |
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| CDS GCA 90 bp | GTGAGTGAGACACAAAAGGTCTTTTGCACACAGTCGGAACGTGAGTaGTTCAGTGAGGAAGTGTTTCTCATGCCTCTGGGTCTTTACTCT | + |
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Preference number: 5 (lower is better) Translates to: VSETQKVFCTQSERE*FSEEVFLMPLGLYS Trigger: AGAGTAAAGACCCAGAGGCATGAGAAACACTTCCTCACTGAAGCACTCACGTTCCGACTGTGTGCAAAAGACCTTTTGTGTCTCACTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000512547.1 ENST00000668509.1 |
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| CDS TCA 90 bp | CTGAGATGGGCTTATCTTGAACACGGGCTGACTTTCCCTTGTGTTTaGGCTCATTCATTTCCCCCAGGTACTGAAGGTTTTCTAAGACGT | + |
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Preference number: 5 (lower is better) Translates to: LRWAYLEHGLTFPCV*AHSFPPGTEGFLRR Trigger: ACGTCTTAGAAAACCTTCAGTACCTGGGGGAAATGAATGAGCTCAAACACAAGGGAAAGTCAGCCCGTGTTCAAGATAAGCCCATCTCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000512547.1 ENST00000668509.1 |
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| CDS GCA 90 bp | AGTGAAGAACAATCTCCCTCAGTGAGTGAGACACAAAAGGTCTTTTaGACACAGTCGGAACGTGAGTGCTTCAGTGAGGAAGTGTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: SEEQSPSVSETQKVF*TQSERECFSEEVFL Trigger: GAGAAACACTTCCTCACTGAAGCACTCACGTTCCGACTGTGTGCAAAAGACCTTTTGTGTCTCACTCACTGAGGGAGATTGTTCTTCACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000512547.1 ENST00000668509.1 |
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| CDS TCA 90 bp | GAGGAAGTGTTTCTCATGCCTCTGGGTCTTTACTCTTGTTGCTGCTaGTATACACTTCCAGGAGATGGAGCTATGGCTCAGTTTGAATTC | + |
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Preference number: 5 (lower is better) Translates to: EEVFLMPLGLYSCCC*YTLPGDGAMAQFEF Trigger: GAATTCAAACTGAGCCATAGCTCCATCTCCTGGAAGTGTATATCAGCAGCAACAAGAGTAAAGACCCAGAGGCATGAGAAACACTTCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000512547.1 ENST00000668509.1 |
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| CDS TCA 90 bp | TTGCTGCTGATATACACTTCCAGGAGATGGAGCTATGGCTCAGTTTaGATTCTCACATCTTTTGTGGTATTTGAATATAATGGTGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: LLLIYTSRRWSYGSV*ILTSFVVFEYNGVW Trigger: CCAGACACCATTATATTCAAATACCACAAAAGATGTGAGAATTCAAACTGAGCCATAGCTCCATCTCCTGGAAGTGTATATCAGCAGCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000512547.1 ENST00000668509.1 |
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| CDS TCA 72 bp | GAATATAATGGTGTCTGGTATTCTGGGACTCCTAGCTaGGCGCCCAGCAGGCAGGAGGGTTCCCACACATGC | + |
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Preference number: 6 (lower is better) Translates to: EYNGVWYSGTPS*APSRQEGSHTC Trigger: GCATGTGTGGGAACCCTCCTGCCTGCTGGGCGCTCAGCTAGGAGTCCCAGAATACCAGACACCATTATATTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000512547.1 ENST00000668509.1 |
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| CDS GCA 72 bp | ACACAAAAGGTCTTTTGCACACAGTCGGAACGTGAGTaGTTCAGTGAGGAAGTGTTTCTCATGCCTCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: TQKVFCTQSERE*FSEEVFLMPLG Trigger: ACCCAGAGGCATGAGAAACACTTCCTCACTGAAGCACTCACGTTCCGACTGTGTGCAAAAGACCTTTTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000512547.1 ENST00000668509.1 |
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| CDS GCA 72 bp | CAATCTCCCTCAGTGAGTGAGACACAAAAGGTCTTTTaGACACAGTCGGAACGTGAGTGCTTCAGTGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: QSPSVSETQKVF*TQSERECFSEE Trigger: TTCCTCACTGAAGCACTCACGTTCCGACTGTGTGCAAAAGACCTTTTGTGTCTCACTCACTGAGGGAGATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000512547.1 ENST00000668509.1 |
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| CDS TCA 72 bp | GCTTATCTTGAACACGGGCTGACTTTCCCTTGTGTTTaGGCTCATTCATTTCCCCCAGGTACTGAAGGTTTT | + |
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Preference number: 6 (lower is better) Translates to: AYLEHGLTFPCV*AHSFPPGTEGF Trigger: AAAACCTTCAGTACCTGGGGGAAATGAATGAGCTCAAACACAAGGGAAAGTCAGCCCGTGTTCAAGATAAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000512547.1 ENST00000668509.1 |
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| CDS CAA 90 bp | GATGGAGCTATGGCTCAGTTTGAATTCTCACATCTTTTGTGGTATTaGAATATAATGGTGTCTGGTATTCTGGGACTCCTAGCTGAGCGC | + |
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Preference number: 6 (lower is better) Translates to: DGAMAQFEFSHLLWY*NIMVSGILGLLAER Trigger: GCGCTCAGCTAGGAGTCCCAGAATACCAGACACCATTATATTCAAATACCACAAAAGATGTGAGAATTCAAACTGAGCCATAGCTCCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000512547.1 ENST00000668509.1 |
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| CDS TCA 72 bp | CCCTTGTGTTTGAGCTCATTCATTTCCCCCAGGTACTaGAGGTTTTCTAAGACGTCTGTTCTTCTCATTGAT | + |
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Preference number: 6 (lower is better) Translates to: PLCLSSFISPRY*RFSKTSVLLID Trigger: ATCAATGAGAAGAACAGACGTCTTAGAAAACCTTCAGTACCTGGGGGAAATGAATGAGCTCAAACACAAGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000512547.1 ENST00000668509.1 |
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