Pregenerated sensors for LINC02488 (Homo sapiens)
Ensembl gene IDs: ENSG00000249362Ensembl transcript IDs: ENST00000504287.1, ENST00000655396.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AAGCAGGATTCAGGTGAAGGAGACCTCAGGGGACCAGGGACCAGCTaGAGGACGTTTGCCTTGTTCAAGATGCAGTTTCCAAAGTCATCA | + |
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Preference number: 5 (lower is better) Translates to: KQDSGEGDLRGPGTS*RTFALFKMQFPKSS Trigger: TGATGACTTTGGAAACTGCATCTTGAACAAGGCAAACGTCCTTCAGCTGGTCCCTGGTCCCCTGAGGTCTCCTTCACCTGAATCCTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655396.1 |
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| CDS TCA 90 bp | CAAAGTCATCATCATTGTTCCCATCCAAGTTTAGAGTCCCTCCCCTaGGCTCAGCATGAAATGATCAGAAAAATCCATAGCATACAGCTT | + |
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Preference number: 5 (lower is better) Translates to: QSHHHCSHPSLESLP*AQHEMIRKIHSIQL Trigger: AAGCTGTATGCTATGGATTTTTCTGATCATTTCATGCTGAGCTCAGGGGAGGGACTCTAAACTTGGATGGGAACAATGATGATGACTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000655396.1 |
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| CDS CCA 90 bp | ATTTATTATCTGAGGAACATGAGTCAATTCATAAGAAGCTCCCGGTaGATAGTATTCACAATCGGCCTTCAGTTTCAACCCTTACTGTTC | + |
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Preference number: 5 (lower is better) Translates to: IYYLRNMSQFIRSSR*IVFTIGLQFQPLLF Trigger: GAACAGTAAGGGTTGAAACTGAAGGCCGATTGTGAATACTATCCACCGGGAGCTTCTTATGAATTGACTCATGTTCCTCAGATAATAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504287.1 |
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| CDS TCA 72 bp | TCAGGTGAAGGAGACCTCAGGGGACCAGGGACCAGCTaGAGGACGTTTGCCTTGTTCAAGATGCAGTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: SGEGDLRGPGTS*RTFALFKMQFP Trigger: TGGAAACTGCATCTTGAACAAGGCAAACGTCCTTCAGCTGGTCCCTGGTCCCCTGAGGTCTCCTTCACCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655396.1 |
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| CDS CAA 90 bp | CAGGTGAAGGAGACCTCAGGGGACCAGGGACCAGCTGAAGGACGTTaGCCTTGTTCAAGATGCAGTTTCCAAAGTCATCATCATTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: QVKETSGDQGPAEGR*PCSRCSFQSHHHCS Trigger: GGAACAATGATGATGACTTTGGAAACTGCATCTTGAACAAGGCAAACGTCCTTCAGCTGGTCCCTGGTCCCCTGAGGTCTCCTTCACCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655396.1 |
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| CDS GCA 72 bp | AGACCTCAGGGGACCAGGGACCAGCTGAAGGACGTTTaGCTTGTTCAAGATGCAGTTTCCAAAGTCATCATC | + |
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Preference number: 6 (lower is better) Translates to: RPQGTRDQLKDV*LVQDAVSKVII Trigger: GATGATGACTTTGGAAACTGCATCTTGAACAAGGCAAACGTCCTTCAGCTGGTCCCTGGTCCCCTGAGGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655396.1 |
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| CDS CAA 72 bp | GAGACCTCAGGGGACCAGGGACCAGCTGAAGGACGTTaGCCTTGTTCAAGATGCAGTTTCCAAAGTCATCAT | + |
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Preference number: 6 (lower is better) Translates to: ETSGDQGPAEGR*PCSRCSFQSHH Trigger: ATGATGACTTTGGAAACTGCATCTTGAACAAGGCAAACGTCCTTCAGCTGGTCCCTGGTCCCCTGAGGTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655396.1 |
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| CDS CCA 72 bp | CTGAGGAACATGAGTCAATTCATAAGAAGCTCCCGGTaGATAGTATTCACAATCGGCCTTCAGTTTCAACCC | + |
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Preference number: 6 (lower is better) Translates to: LRNMSQFIRSSR*IVFTIGLQFQP Trigger: GGGTTGAAACTGAAGGCCGATTGTGAATACTATCCACCGGGAGCTTCTTATGAATTGACTCATGTTCCTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504287.1 |
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| CDS CAA 72 bp | CAAGATGTTGTCAGGTATCAGATCCCTTTTCAAAGCTaGCAGGAGATGAAAGTAGCACTCCTTGAGGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: QDVVRYQIPFQS*QEMKVALLEVR Trigger: TCTGACCTCAAGGAGTGCTACTTTCATCTCCTGCAAGCTTTGAAAAGGGATCTGATACCTGACAACATCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504287.1 |
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| CDS CAA 90 bp | CCAAACAATCTAGAGTACCCTGAATCACTAGCGACATCAATAATTTaGGTTCAGCTTCCATCAGAAGATGGGATGTGCTTTTGTCAAGAT | + |
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Preference number: 6 (lower is better) Translates to: PNNLEYPESLATSII*VQLPSEDGMCFCQD Trigger: ATCTTGACAAAAGCACATCCCATCTTCTGATGGAAGCTGAACCAAAATTATTGATGTCGCTAGTGATTCAGGGTACTCTAGATTGTTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504287.1 |
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| CDS GCA 72 bp | ATAATTTTGGTTCAGCTTCCATCAGAAGATGGGATGTaGTTTTGTCAAGATGTTGTCAGGTATCAGATCCCT | + |
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Preference number: 6 (lower is better) Translates to: IILVQLPSEDGM*FCQDVVRYQIP Trigger: AGGGATCTGATACCTGACAACATCTTGACAAAAGCACATCCCATCTTCTGATGGAAGCTGAACCAAAATTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000504287.1 |
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| CDS CAA 90 bp | ATCAATAATTTTGGTTCAGCTTCCATCAGAAGATGGGATGTGCTTTaGTCAAGATGTTGTCAGGTATCAGATCCCTTTTCAAAGCTTGCA | + |
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Preference number: 6 (lower is better) Translates to: INNFGSASIRRWDVL*SRCCQVSDPFSKLA Trigger: TGCAAGCTTTGAAAAGGGATCTGATACCTGACAACATCTTGACAAAAGCACATCCCATCTTCTGATGGAAGCTGAACCAAAATTATTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000504287.1 |
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| CDS CCA 72 bp | ATTAGGAGTAGAACTAGTATAGCTCTAATGCATCAGTaGGGTAAGCAGTATCTATCTACTAAGGTCATTTCT | + |
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Preference number: 6 (lower is better) Translates to: IRSRTSIALMHQ*GKQYLSTKVIS Trigger: AGAAATGACCTTAGTAGATAGATACTGCTTACCCCACTGATGCATTAGAGCTATACTAGTTCTACTCCTAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000504287.1 |
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