Pregenerated sensors for LINC02485 (Homo sapiens)
Ensembl gene IDs: ENSG00000248456Ensembl transcript IDs: ENST00000506412.1, ENST00000511899.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAGAGCGAGACTCTGTGTAGCATTGATGGACACGTCTCAAGGTCTTaGTCCTACGGCTGCTTGCAGACTGCTCCTCTCCCATCCTCTTGT | + |
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Preference number: 5 (lower is better) Translates to: QSETLCSIDGHVSRS*SYGCLQTAPLPSSC Trigger: ACAAGAGGATGGGAGAGGAGCAGTCTGCAAGCAGCCGTAGGAGCAAGACCTTGAGACGTGTCCATCAATGCTACACAGAGTCTCGCTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000506412.1 |
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| CDS GCA 90 bp | GTAGCATTGATGGACACGTCTCAAGGTCTTGCTCCTACGGCTGCTTaGAGACTGCTCCTCTCCCATCCTCTTGTGACTCTGGATAAGAAG | + |
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Preference number: 5 (lower is better) Translates to: VALMDTSQGLAPTAA*RLLLSHPLVTLDKK Trigger: CTTCTTATCCAGAGTCACAAGAGGATGGGAGAGGAGCAGTCTGCAAGCAGCCGTAGGAGCAAGACCTTGAGACGTGTCCATCAATGCTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000506412.1 |
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| CDS GCA 90 bp | TATCGTAGCATTGATGGACACGTCTCAAGGTCTTGCTCCTACGGCTaGTTGCAGACTGCTCCTCTCCCATCCTCTTGTGACTCTGGAAAA | + |
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Preference number: 5 (lower is better) Translates to: YRSIDGHVSRSCSYG*LQTAPLPSSCDSGK Trigger: TTTTCCAGAGTCACAAGAGGATGGGAGAGGAGCAGTCTGCAAGCAGCCGTAGGAGCAAGACCTTGAGACGTGTCCATCAATGCTACGATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511899.1 |
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| CDS GCA 90 bp | CAAAGCAGAATCTATCGTAGCATTGATGGACACGTCTCAAGGTCTTaGTCCTACGGCTGCTTGCAGACTGCTCCTCTCCCATCCTCTTGT | + |
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Preference number: 5 (lower is better) Translates to: QSRIYRSIDGHVSRS*SYGCLQTAPLPSSC Trigger: ACAAGAGGATGGGAGAGGAGCAGTCTGCAAGCAGCCGTAGGAGCAAGACCTTGAGACGTGTCCATCAATGCTACGATAGATTCTGCTTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511899.1 |
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| CDS GCA 90 bp | GTAGCATTGATGGACACGTCTCAAGGTCTTGCTCCTACGGCTGCTTaGAGACTGCTCCTCTCCCATCCTCTTGTGACTCTGGAAAAATTT | + |
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Preference number: 5 (lower is better) Translates to: VALMDTSQGLAPTAA*RLLLSHPLVTLEKF Trigger: AAATTTTTCCAGAGTCACAAGAGGATGGGAGAGGAGCAGTCTGCAAGCAGCCGTAGGAGCAAGACCTTGAGACGTGTCCATCAATGCTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000511899.1 |
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| CDS GCA 90 bp | TCCAGAAATACCACTCCAGGAGAAAGCTCCTCTGTCCATCCTCCATaGCGTGAGTCCCATCATTATTGTGATATACAGCATGTTGATCTC | + |
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Preference number: 5 (lower is better) Translates to: SRNTTPGESSSVHPP*RESHHYCDIQHVDL Trigger: GAGATCAACATGCTGTATATCACAATAATGATGGGACTCACGGCATGGAGGATGGACAGAGGAGCTTTCTCCTGGAGTGGTATTTCTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511899.1 |
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| CDS TCA 90 bp | AGGGGCTGGACTCATCATTTGATGAAACTACGTAACATTGTTGTGTaGGTGAAGTGTTGGACTATTAAGGAGACAAATAGAAATTGCTAT | + |
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Preference number: 5 (lower is better) Translates to: RGWTHHLMKLRNIVV*VKCWTIKETNRNCY Trigger: ATAGCAATTTCTATTTGTCTCCTTAATAGTCCAACACTTCACTCACACAACAATGTTACGTAGTTTCATCAAATGATGAGTCCAGCCCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000511899.1 |
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| CDS CCA 90 bp | TCTGTATTCTTCACCTACTTTCAGACTTTCAGCCCCTTACAATCATaGAAGTCTAAATATTTGTCACAGTCTTCCCCATTTACAAATTCT | + |
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Preference number: 5 (lower is better) Translates to: SVFFTYFQTFSPLQS*KSKYLSQSSPFTNS Trigger: AGAATTTGTAAATGGGGAAGACTGTGACAAATATTTAGACTTCCATGATTGTAAGGGGCTGAAAGTCTGAAAGTAGGTGAAGAATACAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000511899.1 |
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| CDS GCA 72 bp | ATTGATGGACACGTCTCAAGGTCTTGCTCCTACGGCTaGTTGCAGACTGCTCCTCTCCCATCCTCTTGTGAC | + |
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Preference number: 6 (lower is better) Translates to: IDGHVSRSCSYG*LQTAPLPSSCD Trigger: GTCACAAGAGGATGGGAGAGGAGCAGTCTGCAAGCAGCCGTAGGAGCAAGACCTTGAGACGTGTCCATCAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000506412.1 ENST00000511899.1 |
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| CDS GCA 72 bp | ACTCTGTGTAGCATTGATGGACACGTCTCAAGGTCTTaGTCCTACGGCTGCTTGCAGACTGCTCCTCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: TLCSIDGHVSRS*SYGCLQTAPLP Trigger: TGGGAGAGGAGCAGTCTGCAAGCAGCCGTAGGAGCAAGACCTTGAGACGTGTCCATCAATGCTACACAGAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000506412.1 |
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| CDS GCA 72 bp | ATCTATCGTAGCATTGATGGACACGTCTCAAGGTCTTaGTCCTACGGCTGCTTGCAGACTGCTCCTCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: IYRSIDGHVSRS*SYGCLQTAPLP Trigger: TGGGAGAGGAGCAGTCTGCAAGCAGCCGTAGGAGCAAGACCTTGAGACGTGTCCATCAATGCTACGATAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511899.1 |
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| CDS GCA 72 bp | ACCACTCCAGGAGAAAGCTCCTCTGTCCATCCTCCATaGCGTGAGTCCCATCATTATTGTGATATACAGCAT | + |
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Preference number: 6 (lower is better) Translates to: TTPGESSSVHPP*RESHHYCDIQH Trigger: ATGCTGTATATCACAATAATGATGGGACTCACGGCATGGAGGATGGACAGAGGAGCTTTCTCCTGGAGTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511899.1 |
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| CDS CAA 90 bp | ATCCTCCATGCCGTGAGTCCCATCATTATTGTGATATACAGCATGTaGATCTCCAAAGCAGAATCTATCGTAGCATTGATGGACACGTCT | + |
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Preference number: 6 (lower is better) Translates to: ILHAVSPIIIVIYSM*ISKAESIVALMDTS Trigger: AGACGTGTCCATCAATGCTACGATAGATTCTGCTTTGGAGATCAACATGCTGTATATCACAATAATGATGGGACTCACGGCATGGAGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511899.1 |
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| CDS CCA 72 bp | ATTAAGGAGACAAATAGAAATTGCTATACTCCTTGGTaGATTCACCTCAGTCTCCTTTATTCTTTCTATTCC | + |
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Preference number: 6 (lower is better) Translates to: IKETNRNCYTPW*IHLSLLYSFYS Trigger: GGAATAGAAAGAATAAAGGAGACTGAGGTGAATCCACCAAGGAGTATAGCAATTTCTATTTGTCTCCTTAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511899.1 |
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| CDS TCA 72 bp | ACTCATCATTTGATGAAACTACGTAACATTGTTGTGTaGGTGAAGTGTTGGACTATTAAGGAGACAAATAGA | + |
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Preference number: 6 (lower is better) Translates to: THHLMKLRNIVV*VKCWTIKETNR Trigger: TCTATTTGTCTCCTTAATAGTCCAACACTTCACTCACACAACAATGTTACGTAGTTTCATCAAATGATGAGT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511899.1 |
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