Pregenerated sensors for LINC02480 (Homo sapiens)
Ensembl gene IDs: ENSG00000251040Ensembl transcript IDs: ENST00000511875.1
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AAAAGGAGAGAGGCTTATTTAGCTTCATATCCTCAGCACAGCAACTaGCACATAAGAAAGAAGAAACAAGTTGGGAGCCAGGAGGAGGAA | + |
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Preference number: 5 (lower is better) Translates to: KRREAYLASYPQHSN*HIRKKKQVGSQEEE Trigger: TTCCTCCTCCTGGCTCCCAACTTGTTTCTTCTTTCTTATGTGCCAGTTGCTGTGCTGAGGATATGAAGCTAAATAAGCCTCTCTCCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000511875.1 |
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| CDS CAA 90 bp | AGTCATTTCATGTACATCTTGGCTTCCCTAGAATTCAAGGATGTGTaGTGTATAGCAGGAACTTGTGTTTATGATAAGAAGCGTTGGTCT | + |
|
Preference number: 6 (lower is better) Translates to: SHFMYILASLEFKDV*CIAGTCVYDKKRWS Trigger: AGACCAACGCTTCTTATCATAAACACAAGTTCCTGCTATACACAACACATCCTTGAATTCTAGGGAAGCCAAGATGTACATGAAATGACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511875.1 |
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| CDS CAA 90 bp | ATTAGATTCAAGACCTTTAAGACCTGCAGTCATTTCATGTACATCTaGGCTTCCCTAGAATTCAAGGATGTGTTGTGTATAGCAGGAACT | + |
|
Preference number: 6 (lower is better) Translates to: IRFKTFKTCSHFMYI*ASLEFKDVLCIAGT Trigger: AGTTCCTGCTATACACAACACATCCTTGAATTCTAGGGAAGCCAAGATGTACATGAAATGACTGCAGGTCTTAAAGGTCTTGAATCTAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511875.1 |
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| CDS CAA 72 bp | AAGACCTTTAAGACCTGCAGTCATTTCATGTACATCTaGGCTTCCCTAGAATTCAAGGATGTGTTGTGTATA | + |
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Preference number: 6 (lower is better) Translates to: KTFKTCSHFMYI*ASLEFKDVLCI Trigger: TATACACAACACATCCTTGAATTCTAGGGAAGCCAAGATGTACATGAAATGACTGCAGGTCTTAAAGGTCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000511875.1 |
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