Pregenerated sensors for LINC02478 (Homo sapiens)
Ensembl gene IDs: ENSG00000285373Ensembl transcript IDs: ENST00000477514.1, ENST00000655410.1, ENST00000664835.1
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTGGGTTTGTCTCGAGAGGCCATGCTTCTCTCCTCCCTGACATTTTaGTCTCAGAAGCACCAGTTAGCATCAGAGGAATGTTGTTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: LGLSREAMLLSSLTF*SQKHQLASEECCFL Trigger: AAGGAAACAACATTCCTCTGATGCTAACTGGTGCTTCTGAGAGCAAAATGTCAGGGAGGAGAGAAGCATGGCCTCTCGAGACAAACCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664835.1 |
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| CDS TCA 90 bp | ATTGTCCTGACGGGATGCAGTGAGGAGAAAACAGCTTCACTTTGTTaGTATTCCTGCCAAAATTGGACCACGCAGAAACTTCAAACAAAC | + |
|
Preference number: 5 (lower is better) Translates to: IVLTGCSEEKTASLC*YSCQNWTTQKLQTN Trigger: GTTTGTTTGAAGTTTCTGCGTGGTCCAATTTTGGCAGGAATATCAACAAAGTGAAGCTGTTTTCTCCTCACTGCATCCCGTCAGGACAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655410.1 |
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| CDS TCA 90 bp | TTCCTGCCAAAATTGGACCACGCAGAAACTTCAAACAAACCAATCTaGGACACTCTGCAAAATCACAGGCTCATAATCTTCAAGGAACAT | + |
|
Preference number: 5 (lower is better) Translates to: FLPKLDHAETSNKPI*DTLQNHRLIIFKEH Trigger: ATGTTCCTTGAAGATTATGAGCCTGTGATTTTGCAGAGTGTCTCAGATTGGTTTGTTTGAAGTTTCTGCGTGGTCCAATTTTGGCAGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655410.1 |
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| CDS CAA 72 bp | AGTGAGACCAGAGCTTACATTCTTAGCAGCCTGGGTTaGTCTCGAGAGGCCATGCTTCTCTCCTCCCTGACA | + |
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Preference number: 6 (lower is better) Translates to: SETRAYILSSLG*SREAMLLSSLT Trigger: TGTCAGGGAGGAGAGAAGCATGGCCTCTCGAGACAAACCCAGGCTGCTAAGAATGTAAGCTCTGGTCTCACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000477514.1 ENST00000664835.1 |
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| CDS CAA 90 bp | GGAACGCAAAGTGAGACCAGAGCTTACATTCTTAGCAGCCTGGGTTaGTCTCGAGAGGCCATGCTTCTCTCCTCCCTGACATTTTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: GTQSETRAYILSSLG*SREAMLLSSLTFCS Trigger: AGAGCAAAATGTCAGGGAGGAGAGAAGCATGGCCTCTCGAGACAAACCCAGGCTGCTAAGAATGTAAGCTCTGGTCTCACTTTGCGTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664835.1 |
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| CDS GCA 72 bp | TCTCGAGAGGCCATGCTTCTCTCCTCCCTGACATTTTaGTCTCAGAAGCACCAGTTAGCATCAGAGGAATGT | + |
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Preference number: 6 (lower is better) Translates to: SREAMLLSSLTF*SQKHQLASEEC Trigger: ACATTCCTCTGATGCTAACTGGTGCTTCTGAGAGCAAAATGTCAGGGAGGAGAGAAGCATGGCCTCTCGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664835.1 |
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