Pregenerated sensors for LINC02477 (Homo sapiens)
Ensembl gene IDs: ENSG00000249425Ensembl transcript IDs: ENST00000512652.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGCTGGCACCTTGTTGCTGCATTCTCACACTGTAGAAATGGCAAATaGGCTGCCTTAGCCCACTGGTTACTTAATGGGATGTCCCCATCA | + |
|
Preference number: 5 (lower is better) Translates to: SWHLVAAFSHCRNGK*AALAHWLLNGMSPS Trigger: TGATGGGGACATCCCATTAAGTAACCAGTGGGCTAAGGCAGCTCATTTGCCATTTCTACAGTGTGAGAATGCAGCAACAAGGTGCCAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512652.1 |
||
| CDS CCA 90 bp | ATGCCTTCTAATGACCATGCAATTTCAGTTCCTCTTGTTGTTCTCTaGAGTTTCTTATTTCAGTCCCTTGGCTTCAATTTAATGCTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: MPSNDHAISVPLVVL*SFLFQSLGFNLMLC Trigger: GCAGAGCATTAAATTGAAGCCAAGGGACTGAAATAAGAAACTCCAGAGAACAACAAGAGGAACTGAAATTGCATGGTCATTAGAAGGCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512652.1 |
||
| CDS CCA 72 bp | CTCGTGAGGGCTCCACCCTCAAGCCTGGACCATGGCTaGGAGACTGATTTGTGTAGAAATAAAACTCTGGTA | + |
|
Preference number: 6 (lower is better) Translates to: LVRAPPSSLDHG*ETDLCRNKTLV Trigger: TACCAGAGTTTTATTTCTACACAAATCAGTCTCCCAGCCATGGTCCAGGCTTGAGGGTGGAGCCCTCACGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512652.1 |
||
| CDS CAA 90 bp | GTGAGGGCTCCACCCTCAAGCCTGGACCATGGCTGGGAGACTGATTaGTGTAGAAATAAAACTCTGGTATTCTATTCAGCTGGCTCTGTG | + |
|
Preference number: 6 (lower is better) Translates to: VRAPPSSLDHGWETD*CRNKTLVFYSAGSV Trigger: CACAGAGCCAGCTGAATAGAATACCAGAGTTTTATTTCTACACAAATCAGTCTCCCAGCCATGGTCCAGGCTTGAGGGTGGAGCCCTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512652.1 |
||
| CDS CAA 90 bp | GTTTGGGAAGCTGAAGAGTCCAAGATCAAGTTGTCAGTAGATTCATaGTCTGGTAAGGGCTCTTTGCTTCATAGCTGGCACCTTGTTGCT | + |
|
Preference number: 6 (lower is better) Translates to: VWEAEESKIKLSVDS*SGKGSLLHSWHLVA Trigger: AGCAACAAGGTGCCAGCTATGAAGCAAAGAGCCCTTACCAGACAATGAATCTACTGACAACTTGATCTTGGACTCTTCAGCTTCCCAAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512652.1 |
||
| CDS TCA 72 bp | CTTGTTGCTGCATTCTCACACTGTAGAAATGGCAAATaGGCTGCCTTAGCCCACTGGTTACTTAATGGGATG | + |
|
Preference number: 6 (lower is better) Translates to: LVAAFSHCRNGK*AALAHWLLNGM Trigger: CATCCCATTAAGTAACCAGTGGGCTAAGGCAGCTCATTTGCCATTTCTACAGTGTGAGAATGCAGCAACAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512652.1 |
||
| CDS CAA 72 bp | GCTGAAGAGTCCAAGATCAAGTTGTCAGTAGATTCATaGTCTGGTAAGGGCTCTTTGCTTCATAGCTGGCAC | + |
|
Preference number: 6 (lower is better) Translates to: AEESKIKLSVDS*SGKGSLLHSWH Trigger: GTGCCAGCTATGAAGCAAAGAGCCCTTACCAGACAATGAATCTACTGACAACTTGATCTTGGACTCTTCAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512652.1 |
||
| CDS CAA 72 bp | CCACCCTCAAGCCTGGACCATGGCTGGGAGACTGATTaGTGTAGAAATAAAACTCTGGTATTCTATTCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: PPSSLDHGWETD*CRNKTLVFYSA Trigger: AGCTGAATAGAATACCAGAGTTTTATTTCTACACAAATCAGTCTCCCAGCCATGGTCCAGGCTTGAGGGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000512652.1 |
||
| CDS CCA 72 bp | GATTCATTGTCTGGTAAGGGCTCTTTGCTTCATAGCTaGCACCTTGTTGCTGCATTCTCACACTGTAGAAAT | + |
|
Preference number: 6 (lower is better) Translates to: DSLSGKGSLLHS*HLVAAFSHCRN Trigger: ATTTCTACAGTGTGAGAATGCAGCAACAAGGTGCCAGCTATGAAGCAAAGAGCCCTTACCAGACAATGAATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512652.1 |
||
| CDS CAA 72 bp | AAGTTGTCAGTAGATTCATTGTCTGGTAAGGGCTCTTaGCTTCATAGCTGGCACCTTGTTGCTGCATTCTCA | + |
|
Preference number: 6 (lower is better) Translates to: KLSVDSLSGKGS*LHSWHLVAAFS Trigger: TGAGAATGCAGCAACAAGGTGCCAGCTATGAAGCAAAGAGCCCTTACCAGACAATGAATCTACTGACAACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512652.1 |
||
| CDS CAA 90 bp | CTCCCACAGGACTTACCTCTTAATGCCATTAACTTAAGGTTAAGATaGCAACATAAAAATCTGAAGAGGACACAGATATTCGGACCACAG | + |
|
Preference number: 6 (lower is better) Translates to: LPQDLPLNAINLRLR*QHKNLKRTQIFGPQ Trigger: CTGTGGTCCGAATATCTGTGTCCTCTTCAGATTTTTATGTTGCAATCTTAACCTTAAGTTAATGGCATTAAGAGGTAAGTCCTGTGGGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000512652.1 |
||