Pregenerated sensors for LINC02476 (Homo sapiens)
Ensembl gene IDs: ENSG00000225546Ensembl transcript IDs: ENST00000426413.2, ENST00000431071.5, ENST00000660268.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGCTGGAAGTCAAATATCAAGGTGGTAGCAAAGTCACTGTCTGCTTaGAGTTCCCCTTTTGGTTTGCAGATGGCTCCCTTCTCACCGTGT | + |
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Preference number: 5 (lower is better) Translates to: GWKSNIKVVAKSLSA*SSPFGLQMAPFSPC Trigger: ACACGGTGAGAAGGGAGCCATCTGCAAACCAAAAGGGGAACTCCAAGCAGACAGTGACTTTGCTACCACCTTGATATTTGACTTCCAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431071.5 |
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| CDS CCA 90 bp | GTATTCCAAATGCTTCTGTTTTTCAGTCACATTTTGAGTTTGACATaGCTGGAAAGGCCTCAGAATCACGGCGGGAGGCGAAAGTCGCTT | + |
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Preference number: 5 (lower is better) Translates to: VFQMLLFFSHILSLT*LERPQNHGGRRKSL Trigger: AAGCGACTTTCGCCTCCCGCCGTGATTCTGAGGCCTTTCCAGCCATGTCAAACTCAAAATGTGACTGAAAAACAGAAGCATTTGGAATAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000426413.2 ENST00000431071.5 ENST00000660268.1 |
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| CDS TCA 90 bp | TGTCAAACAACACTGTACTGCTTCCTAGGTAGGACAGGGACTTTATaGGAGAATATTCTCAATTCCTGCCTCTCACTACTTACAATGTTG | + |
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Preference number: 5 (lower is better) Translates to: CQTTLYCFLGRTGTL*ENILNSCLSLLTML Trigger: CAACATTGTAAGTAGTGAGAGGCAGGAATTGAGAATATTCTCTCATAAAGTCCCTGTCCTACCTAGGAAGCAGTACAGTGTTGTTTGACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431071.5 |
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| CDS GCA 72 bp | CAAAGTCACTGTCTGCTTGGAGTTCCCCTTTTGGTTTaGAGATGGCTCCCTTCTCACCGTGTCCTCACATGG | + |
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Preference number: 6 (lower is better) Translates to: QSHCLLGVPLLV*RWLPSHRVLTW Trigger: CCATGTGAGGACACGGTGAGAAGGGAGCCATCTGCAAACCAAAAGGGGAACTCCAAGCAGACAGTGACTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431071.5 |
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| CDS CCA 72 bp | GGTAGCAAAGTCACTGTCTGCTTGGAGTTCCCCTTTTaGTTTGCAGATGGCTCCCTTCTCACCGTGTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: GSKVTVCLEFPF*FADGSLLTVSS Trigger: TGAGGACACGGTGAGAAGGGAGCCATCTGCAAACCAAAAGGGGAACTCCAAGCAGACAGTGACTTTGCTACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431071.5 |
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| CDS CAA 72 bp | GCAAAGTCACTGTCTGCTTGGAGTTCCCCTTTTGGTTaGCAGATGGCTCCCTTCTCACCGTGTCCTCACATG | + |
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Preference number: 6 (lower is better) Translates to: AKSLSAWSSPFG*QMAPFSPCPHM Trigger: CATGTGAGGACACGGTGAGAAGGGAGCCATCTGCAAACCAAAAGGGGAACTCCAAGCAGACAGTGACTTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431071.5 |
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| CDS CCA 72 bp | ATGCTTCTGTTTTTCAGTCACATTTTGAGTTTGACATaGCTGGAAAGGCCTCAGAATCACGGCGGGAGGCGA | + |
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Preference number: 6 (lower is better) Translates to: MLLFFSHILSLT*LERPQNHGGRR Trigger: TCGCCTCCCGCCGTGATTCTGAGGCCTTTCCAGCCATGTCAAACTCAAAATGTGACTGAAAAACAGAAGCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000426413.2 ENST00000431071.5 ENST00000660268.1 |
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| CDS CCA 72 bp | TGCATGGCTGAGAAGGCATCAGGAAACTTACAATCATaGCAGAAGGGGAAGCAGGCACATATTACATGGCTC | + |
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Preference number: 6 (lower is better) Translates to: CMAEKASGNLQS*QKGKQAHITWL Trigger: GAGCCATGTAATATGTGCCTGCTTCCCCTTCTGCCATGATTGTAAGTTTCCTGATGCCTTCTCAGCCATGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000426413.2 ENST00000660268.1 |
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| CDS GCA 72 bp | GAAGTCAAATATCAAGGTGGTAGCAAAGTCACTGTCTaGTTGGAGTTCCCCTTTTGGTTTGCAGATGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: EVKYQGGSKVTV*LEFPFWFADGS Trigger: GGAGCCATCTGCAAACCAAAAGGGGAACTCCAAGCAGACAGTGACTTTGCTACCACCTTGATATTTGACTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431071.5 |
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| CDS CCA 72 bp | TCAAATATCAAGGTGGTAGCAAAGTCACTGTCTGCTTaGAGTTCCCCTTTTGGTTTGCAGATGGCTCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: SNIKVVAKSLSA*SSPFGLQMAPF Trigger: GAAGGGAGCCATCTGCAAACCAAAAGGGGAACTCCAAGCAGACAGTGACTTTGCTACCACCTTGATATTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431071.5 |
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| CDS CAA 72 bp | GTCAAATATCAAGGTGGTAGCAAAGTCACTGTCTGCTaGGAGTTCCCCTTTTGGTTTGCAGATGGCTCCCTT | + |
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Preference number: 6 (lower is better) Translates to: VKYQGGSKVTVC*EFPFWFADGSL Trigger: AAGGGAGCCATCTGCAAACCAAAAGGGGAACTCCAAGCAGACAGTGACTTTGCTACCACCTTGATATTTGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431071.5 |
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| CDS TCA 72 bp | ACACTGTACTGCTTCCTAGGTAGGACAGGGACTTTATaGGAGAATATTCTCAATTCCTGCCTCTCACTACTT | + |
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Preference number: 6 (lower is better) Translates to: TLYCFLGRTGTL*ENILNSCLSLL Trigger: AAGTAGTGAGAGGCAGGAATTGAGAATATTCTCTCATAAAGTCCCTGTCCTACCTAGGAAGCAGTACAGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431071.5 |
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| CDS CCA 72 bp | GATGCAAAGCATATAAGTAAAGGGAAATGTCATATGTaGCAATGTCCAGTGGAAACCAGCTATGAAAGTTTC | + |
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Preference number: 6 (lower is better) Translates to: DAKHISKGKCHM*QCPVETSYESF Trigger: GAAACTTTCATAGCTGGTTTCCACTGGACATTGCCACATATGACATTTCCCTTTACTTATATGCTTTGCATC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000660268.1 |
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| CDS CCA 72 bp | AGTGGCTTAATAATAGGAATCAACTTCTCAAAGTTATaGAGGCTGGAAGTCAAATATCAAGGTGGTAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: SGLIIGINFSKL*RLEVKYQGGSK Trigger: TTTGCTACCACCTTGATATTTGACTTCCAGCCTCCATAACTTTGAGAAGTTGATTCCTATTATTAAGCCACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431071.5 |
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