Pregenerated sensors for LINC02475 (Homo sapiens)
Ensembl gene IDs: ENSG00000251350Ensembl transcript IDs: ENST00000507639.1, ENST00000512678.1, ENST00000655776.1, ENST00000668491.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAGCTTCCAGGACTGGATGTTGCTCTGAGTGAGTCGGTGAGTGAGTaGGTGAGTGGCGAGGGAATGTGGAGGTCTAGGATATTACTGTAT | + |
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Preference number: 5 (lower is better) Translates to: ELPGLDVALSESVSE*VSGEGMWRSRILLY Trigger: ATACAGTAATATCCTAGACCTCCACATTCCCTCGCCACTCACTCACTCACTCACCGACTCACTCAGAGCAACATCCAGTCCTGGAAGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000512678.1 ENST00000668491.1 |
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| CDS TCA 90 bp | GCCGAGGCAAGAGAATCGCTTGAACACAGGAAGCGTAGGTTGCAGTaGGCCAAGATCGGGCTAGAGAGTGAAACTATGTCTCAACAAATA | + |
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Preference number: 5 (lower is better) Translates to: AEARESLEHRKRRLQ*AKIGLESETMSQQI Trigger: TATTTGTTGAGACATAGTTTCACTCTCTAGCCCGATCTTGGCTCACTGCAACCTACGCTTCCTGTGTTCAAGCGATTCTCTTGCCTCGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS GCA 90 bp | TTATTTCCCATCATCATGAATGAGGGAACTTTCCTGAACTTTCTCTaGAGTTCAGATCATCTGCTTCCTGGATCTCAGGTCTTCTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: LFPIIMNEGTFLNFL*SSDHLLPGSQVFFF Trigger: AAAGAAGAAGACCTGAGATCCAGGAAGCAGATGATCTGAACTGCAGAGAAAGTTCAGGAAAGTTCCCTCATTCATGATGATGGGAAATAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000507639.1 ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS TCA 90 bp | CAAGACTGCTGTACAGAATTTACTGTTATTTCCCATCATCATGAATaGGGGAACTTTCCTGAACTTTCTCTGCAGTTCAGATCATCTGCT | + |
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Preference number: 5 (lower is better) Translates to: QDCCTEFTVISHHHE*GNFPELSLQFRSSA Trigger: AGCAGATGATCTGAACTGCAGAGAAAGTTCAGGAAAGTTCCCTCATTCATGATGATGGGAAATAACAGTAAATTCTGTACAGCAGTCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000507639.1 ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS TCA 90 bp | TACAATCAAAAGCGTCAGGCATTCTATCAATATTATGTTCTCTGTTaGTTGCCTCTGCACTGTGCCAGTTTAGATTGGTTGTTGTCCAAG | + |
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Preference number: 5 (lower is better) Translates to: YNQKRQAFYQYYVLC*LPLHCASLDWLLSK Trigger: CTTGGACAACAACCAATCTAAACTGGCACAGTGCAGAGGCAATCAACAGAGAACATAATATTGATAGAATGCCTGACGCTTTTGATTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000507639.1 ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS CCA 90 bp | GTGATACTCTTAGAGCAAGCATCATTTGGGATATTATTTCTGTCTTaGGTTCCAGAAAAACCATTGAGGATTCTTGTGTACAGCATAGAG | + |
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Preference number: 5 (lower is better) Translates to: VILLEQASFGILFLS*VPEKPLRILVYSIE Trigger: CTCTATGCTGTACACAAGAATCCTCAATGGTTTTTCTGGAACCCAAGACAGAAATAATATCCCAAATGATGCTTGCTCTAAGAGTATCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000512678.1 |
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| CDS CCA 90 bp | TTCCTTCTTGAACTTTCGGTTTCAGGGCTTATTAAATTCCCTCTATaGAATGTGAAAGAGAGCTTAGCTTGCTTTTACTGGAACTATTCA | + |
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Preference number: 5 (lower is better) Translates to: FLLELSVSGLIKFPL*NVKESLACFYWNYS Trigger: TGAATAGTTCCAGTAAAAGCAAGCTAAGCTCTCTTTCACATTCCATAGAGGGAATTTAATAAGCCCTGAAACCGAAAGTTCAAGAAGGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS TCA 72 bp | AGAGAATCGCTTGAACACAGGAAGCGTAGGTTGCAGTaGGCCAAGATCGGGCTAGAGAGTGAAACTATGTCT | + |
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Preference number: 6 (lower is better) Translates to: RESLEHRKRRLQ*AKIGLESETMS Trigger: AGACATAGTTTCACTCTCTAGCCCGATCTTGGCTCACTGCAACCTACGCTTCCTGTGTTCAAGCGATTCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS TCA 72 bp | CTTGAGGCAGGGAACCTAAGGCCGATTCGTACTTACTaGATATCAGAAGCTACTCCCTTTTCAACCCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: LEAGNLRPIRTY*ISEATPFSTPP Trigger: AGGAGGGGTTGAAAAGGGAGTAGCTTCTGATATTCAGTAAGTACGAATCGGCCTTAGGTTCCCTGCCTCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668491.1 |
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| CDS GCA 72 bp | ATCATCATGAATGAGGGAACTTTCCTGAACTTTCTCTaGAGTTCAGATCATCTGCTTCCTGGATCTCAGGTC | + |
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Preference number: 6 (lower is better) Translates to: IIMNEGTFLNFL*SSDHLLPGSQV Trigger: GACCTGAGATCCAGGAAGCAGATGATCTGAACTGCAGAGAAAGTTCAGGAAAGTTCCCTCATTCATGATGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000507639.1 ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS CAA 72 bp | TCTCTGTTGATTGCCTCTGCACTGTGCCAGTTTAGATaGGTTGTTGTCCAAGACTGCTGTACAGAATTTACT | + |
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Preference number: 6 (lower is better) Translates to: SLLIASALCQFR*VVVQDCCTEFT Trigger: AGTAAATTCTGTACAGCAGTCTTGGACAACAACCAATCTAAACTGGCACAGTGCAGAGGCAATCAACAGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000507639.1 ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS TCA 72 bp | AAGCGTCAGGCATTCTATCAATATTATGTTCTCTGTTaGTTGCCTCTGCACTGTGCCAGTTTAGATTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: KRQAFYQYYVLC*LPLHCASLDWL Trigger: CAACCAATCTAAACTGGCACAGTGCAGAGGCAATCAACAGAGAACATAATATTGATAGAATGCCTGACGCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000507639.1 ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS CCA 72 bp | GAACTTTCGGTTTCAGGGCTTATTAAATTCCCTCTATaGAATGTGAAAGAGAGCTTAGCTTGCTTTTACTGG | + |
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Preference number: 6 (lower is better) Translates to: ELSVSGLIKFPL*NVKESLACFYW Trigger: CCAGTAAAAGCAAGCTAAGCTCTCTTTCACATTCCATAGAGGGAATTTAATAAGCCCTGAAACCGAAAGTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS CCA 72 bp | TCATTGTCACTTAGACTGTCCACAGAAGGCTTTTTATaGTACTCAGGGAGAGTAGAAACATTAGTTGATGCT | + |
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Preference number: 6 (lower is better) Translates to: SLSLRLSTEGFL*YSGRVETLVDA Trigger: AGCATCAACTAATGTTTCTACTCTCCCTGAGTACCATAAAAAGCCTTCTGTGGACAGTCTAAGTGACAATGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS CAA 72 bp | CTCCCCATTCACACCAATAATTTCCAGAGGCAATCATaGATCAATTCATGTAGGACTTGCACTTTTCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: LPIHTNNFQRQS*INSCRTCTFPS Trigger: AGAAGGAAAAGTGCAAGTCCTACATGAATTGATCAATGATTGCCTCTGGAAATTATTGGTGTGAATGGGGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS CAA 90 bp | ATATTATGTTCTCTGTTGATTGCCTCTGCACTGTGCCAGTTTAGATaGGTTGTTGTCCAAGACTGCTGTACAGAATTTACTGTTATTTCC | + |
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Preference number: 6 (lower is better) Translates to: ILCSLLIASALCQFR*VVVQDCCTEFTVIS Trigger: GGAAATAACAGTAAATTCTGTACAGCAGTCTTGGACAACAACCAATCTAAACTGGCACAGTGCAGAGGCAATCAACAGAGAACATAATAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000507639.1 ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS TCA 72 bp | TCCCCATTCACACCAATAATTTCCAGAGGCAATCATTaGTCAATTCATGTAGGACTTGCACTTTTCCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: SPFTPIISRGNH*SIHVGLALFLL Trigger: AAGAAGGAAAAGTGCAAGTCCTACATGAATTGATCAATGATTGCCTCTGGAAATTATTGGTGTGAATGGGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS CAA 90 bp | AGTGATACTCTTAGAGCAAGCATCATTTGGGATATTATTTCTGTCTaGGGTTCCAGAAAAACCATTGAGGATTCTTGTGTACAGCATAGA | + |
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Preference number: 6 (lower is better) Translates to: SDTLRASIIWDIISV*GSRKTIEDSCVQHR Trigger: TCTATGCTGTACACAAGAATCCTCAATGGTTTTTCTGGAACCCAAGACAGAAATAATATCCCAAATGATGCTTGCTCTAAGAGTATCACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000512678.1 |
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| CDS CAA 72 bp | CATCTGAAAGTAATTTTTGCCAAATCTAATGTGTCATaGTCACTTAGACTGTCCACAGAAGGCTTTTTATGG | + |
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Preference number: 6 (lower is better) Translates to: HLKVIFAKSNVS*SLRLSTEGFLW Trigger: CCATAAAAAGCCTTCTGTGGACAGTCTAAGTGACAATGACACATTAGATTTGGCAAAAATTACTTTCAGATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS GCA 72 bp | TTTTTAAAATATTTATCTCAAGGAGACACATGCCTTTaGATGTTCATCACAGCCCTATTTGTAGTAGCAAAG | + |
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Preference number: 6 (lower is better) Translates to: FLKYLSQGDTCL*MFITALFVVAK Trigger: CTTTGCTACTACAAATAGGGCTGTGATGAACATGCAAAGGCATGTGTCTCCTTGAGATAAATATTTTAAAAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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| CDS GCA 72 bp | AAATTCCCTCTATGGAATGTGAAAGAGAGCTTAGCTTaGTTTTACTGGAACTATTCACCATTAATGGTATAT | + |
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Preference number: 6 (lower is better) Translates to: KFPLWNVKESLA*FYWNYSPLMVY Trigger: ATATACCATTAATGGTGAATAGTTCCAGTAAAAGCAAGCTAAGCTCTCTTTCACATTCCATAGAGGGAATTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000512678.1 ENST00000655776.1 ENST00000668491.1 |
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