Pregenerated sensors for LINC02462 (Homo sapiens)
Ensembl gene IDs: ENSG00000251291Ensembl transcript IDs: ENST00000666281.1, ENST00000666371.1, ENST00000670860.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAAATTATGAGTGCCCACTCCTTGGGGATGAGGATTATCCCCTCTTaGGAGGAGCTCCATGGTCCATTGCTTTCATGGCTCTCAAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: EIMSAHSLGMRIIPS*EELHGPLLSWLSSC Trigger: GCAGCTTGAGAGCCATGAAAGCAATGGACCATGGAGCTCCTCTCAAGAGGGGATAATCCTCATCCCCAAGGAGTGGGCACTCATAATTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670860.1 |
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| CDS TCA 90 bp | CTCTCTCTGGTCAGGGCATCTAGCTCAAAGCCCAGGATTGTTTTATaGTGTATGATTGTTTCTGTCTCAGGGGTTATGCTCAGCAGTCTC | + |
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Preference number: 5 (lower is better) Translates to: LSLVRASSSKPRIVL*CMIVSVSGVMLSSL Trigger: GAGACTGCTGAGCATAACCCCTGAGACAGAAACAATCATACATCATAAAACAATCCTGGGCTTTGAGCTAGATGCCCTGACCAGAGAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670860.1 |
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| CDS TCA 90 bp | ATTCTTCATCTCATTGAGACATCTAGGATTCTTCTTGTTTCCCCCTaGAGTTCGGCTGTTTCTGGCTGGATTCTTCTCCGAAGTTATGCC | + |
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Preference number: 5 (lower is better) Translates to: ILHLIETSRILLVSP*SSAVSGWILLRSYA Trigger: GGCATAACTTCGGAGAAGAATCCAGCCAGAAACAGCCGAACTTCAGGGGGAAACAAGAAGAATCCTAGATGTCTCAATGAGATGAAGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000666281.1 |
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| CDS TCA 90 bp | TGGTCAGGGCATCTAGCTCAAAGCCCAGGATTGTTTTATGATGTATaGTTGTTTCTGTCTCAGGGGTTATGCTCAGCAGTCTCTAACTTG | + |
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Preference number: 5 (lower is better) Translates to: WSGHLAQSPGLFYDV*LFLSQGLCSAVSNL Trigger: CAAGTTAGAGACTGCTGAGCATAACCCCTGAGACAGAAACAATCATACATCATAAAACAATCCTGGGCTTTGAGCTAGATGCCCTGACCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670860.1 |
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| CDS CAA 72 bp | GAGTGCCCACTCCTTGGGGATGAGGATTATCCCCTCTaGAGAGGAGCTCCATGGTCCATTGCTTTCATGGCT | + |
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Preference number: 6 (lower is better) Translates to: ECPLLGDEDYPL*RGAPWSIAFMA Trigger: AGCCATGAAAGCAATGGACCATGGAGCTCCTCTCAAGAGGGGATAATCCTCATCCCCAAGGAGTGGGCACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670860.1 |
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| CDS CAA 72 bp | TGGCTTCCTGGAGGTTGGGCATCTGGTTGTCTCAGCTaGTTTCAAGCCTGCTCAAGTATAGGAGTGCGAGGA | + |
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Preference number: 6 (lower is better) Translates to: WLPGGWASGCLS*FQACSSIGVRG Trigger: TCCTCGCACTCCTATACTTGAGCAGGCTTGAAACAAGCTGAGACAACCAGATGCCCAACCTCCAGGAAGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670860.1 |
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| CDS CCA 72 bp | GGAGATACTTTCCAAGTGAGAGAAGCCGGCTCTCTCTaGTCAGGGCATCTAGCTCAAAGCCCAGGATTGTTT | + |
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Preference number: 6 (lower is better) Translates to: GDTFQVREAGSL*SGHLAQSPGLF Trigger: AAACAATCCTGGGCTTTGAGCTAGATGCCCTGACCAGAGAGAGCCGGCTTCTCTCACTTGGAAAGTATCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670860.1 |
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| CDS CAA 90 bp | AGAAATTATGAGTGCCCACTCCTTGGGGATGAGGATTATCCCCTCTaGAGAGGAGCTCCATGGTCCATTGCTTTCATGGCTCTCAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: RNYECPLLGDEDYPL*RGAPWSIAFMALKL Trigger: CAGCTTGAGAGCCATGAAAGCAATGGACCATGGAGCTCCTCTCAAGAGGGGATAATCCTCATCCCCAAGGAGTGGGCACTCATAATTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670860.1 |
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| CDS TCA 72 bp | GGGAGAGAGCAGGGAGGGAATATCAGTAATACACACTaGGAGAGGAGAGTAATGGAAGACACAGCAACCAAC | + |
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Preference number: 6 (lower is better) Translates to: GREQGGNISNTH*ERRVMEDTATN Trigger: GTTGGTTGCTGTGTCTTCCATTACTCTCCTCTCTCAGTGTGTATTACTGATATTCCCTCCCTGCTCTCTCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670860.1 |
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| CDS TCA 72 bp | CTCATTGAGACATCTAGGATTCTTCTTGTTTCCCCCTaGAGTTCGGCTGTTTCTGGCTGGATTCTTCTCCGA | + |
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Preference number: 6 (lower is better) Translates to: LIETSRILLVSP*SSAVSGWILLR Trigger: TCGGAGAAGAATCCAGCCAGAAACAGCCGAACTTCAGGGGGAAACAAGAAGAATCCTAGATGTCTCAATGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000666281.1 |
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| CDS GCA 72 bp | ATGTTCTGTATTTGTCTCCTAGGCAGAAATTATGAGTaGCCACTCCTTGGGGATGAGGATTATCCCCTCTTG | + |
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Preference number: 6 (lower is better) Translates to: MFCICLLGRNYE*PLLGDEDYPLL Trigger: CAAGAGGGGATAATCCTCATCCCCAAGGAGTGGGCACTCATAATTTCTGCCTAGGAGACAAATACAGAACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670860.1 |
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| CDS CCA 72 bp | CCCCATCCCAAGTATTCAATAGTCACTTGTGGCTGGTaGCTAACTCTTGAGCATCTCAGCTCTATAAAACAC | + |
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Preference number: 6 (lower is better) Translates to: PHPKYSIVTCGW*LTLEHLSSIKH Trigger: GTGTTTTATAGAGCTGAGATGCTCAAGAGTTAGCCACCAGCCACAAGTGACTATTGAATACTTGGGATGGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000666281.1 ENST00000666371.1 |
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| CDS CAA 90 bp | AACAGTAGGCAATTCTTCATCTCATTGAGACATCTAGGATTCTTCTaGTTTCCCCCTGAAGTTCGGCTGTTTCTGGCTGGATTCTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: NSRQFFISLRHLGFF*FPPEVRLFLAGFFS Trigger: GGAGAAGAATCCAGCCAGAAACAGCCGAACTTCAGGGGGAAACAAGAAGAATCCTAGATGTCTCAATGAGATGAAGAATTGCCTACTGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000666281.1 ENST00000666371.1 ENST00000670860.1 |
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| CDS CAA 90 bp | AAAGACTGGGTCAGGGTGATAAACAGTAGGCAATTCTTCATCTCATaGAGACATCTAGGATTCTTCTTGTTTCCCCCTGAAGTTCGGCTG | + |
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Preference number: 6 (lower is better) Translates to: KDWVRVINSRQFFIS*RHLGFFLFPPEVRL Trigger: CAGCCGAACTTCAGGGGGAAACAAGAAGAATCCTAGATGTCTCAATGAGATGAAGAATTGCCTACTGTTTATCACCCTGACCCAGTCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000666281.1 ENST00000666371.1 ENST00000670860.1 |
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| CDS TCA 72 bp | GTCAGGGCATCTAGCTCAAAGCCCAGGATTGTTTTATaGTGTATGATTGTTTCTGTCTCAGGGGTTATGCTC | + |
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Preference number: 6 (lower is better) Translates to: VRASSSKPRIVL*CMIVSVSGVML Trigger: GAGCATAACCCCTGAGACAGAAACAATCATACATCATAAAACAATCCTGGGCTTTGAGCTAGATGCCCTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670860.1 |
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| CDS CCA 72 bp | AAAGTAGATAATATGGCTTCCTGGAGGTTGGGCATCTaGTTGTCTCAGCTTGTTTCAAGCCTGCTCAAGTAT | + |
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Preference number: 6 (lower is better) Translates to: KVDNMASWRLGI*LSQLVSSLLKY Trigger: ATACTTGAGCAGGCTTGAAACAAGCTGAGACAACCAGATGCCCAACCTCCAGGAAGCCATATTATCTACTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670860.1 |
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| CDS CAA 72 bp | CAATTCTTCATCTCATTGAGACATCTAGGATTCTTCTaGTTTCCCCCTGAAGTTCGGCTGTTTCTGGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: QFFISLRHLGFF*FPPEVRLFLAG Trigger: TCCAGCCAGAAACAGCCGAACTTCAGGGGGAAACAAGAAGAATCCTAGATGTCTCAATGAGATGAAGAATTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000666281.1 ENST00000666371.1 ENST00000670860.1 |
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| CDS CAA 72 bp | GTCAGGGTGATAAACAGTAGGCAATTCTTCATCTCATaGAGACATCTAGGATTCTTCTTGTTTCCCCCTGAA | + |
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Preference number: 6 (lower is better) Translates to: VRVINSRQFFIS*RHLGFFLFPPE Trigger: TTCAGGGGGAAACAAGAAGAATCCTAGATGTCTCAATGAGATGAAGAATTGCCTACTGTTTATCACCCTGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000666281.1 ENST00000666371.1 ENST00000670860.1 |
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| CDS TCA 72 bp | TTGTTTCAAGCCTGCTCAAGTATAGGAGTGCGAGGATaGTTTAAAGTCCCAAATTGTCACAACTGTTTTTCA | + |
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Preference number: 6 (lower is better) Translates to: LFQACSSIGVRG*FKVPNCHNCFS Trigger: TGAAAAACAGTTGTGACAATTTGGGACTTTAAATCATCCTCGCACTCCTATACTTGAGCAGGCTTGAAACAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000670860.1 |
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