Pregenerated sensors for LINC02458 (Homo sapiens)
Ensembl gene IDs: ENSG00000246363Ensembl transcript IDs: ENST00000500381.2, ENST00000549278.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGCTGGGATGGAACTGGAGCTGGGTCTGCCAACCTCTGTTGCCAGTaGGACATTTCTCACCTGGTAACCATCATTTGCAAGGGCCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: GWDGTGAGSANLCCQ*DISHLVTIICKGLE Trigger: CTCCAGGCCCTTGCAAATGATGGTTACCAGGTGAGAAATGTCTCACTGGCAACAGAGGTTGGCAGACCCAGCTCCAGTTCCATCCCAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS TCA 90 bp | TCATCTGAGATTCCAGCACAGCTGAGCACCCAGGAGATTCCCAGTTaGCAAATAGTGAGGGCAAAGAGCAAGCCGGTCCCCAAGCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: SSEIPAQLSTQEIPS*QIVRAKSKPVPKLS Trigger: GCTCAGCTTGGGGACCGGCTTGCTCTTTGCCCTCACTATTTGTCAACTGGGAATCTCCTGGGTGCTCAGCTGTGCTGGAATCTCAGATGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549278.2 |
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| CDS GCA 90 bp | TTAATGACATTGGTATGTTGGCTGGGATGGAACTGGAGCTGGGTCTaGCAACCTCTGTTGCCAGTGAGACATTTCTCACCTGGTAACCAT | + |
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Preference number: 5 (lower is better) Translates to: LMTLVCWLGWNWSWV*QPLLPVRHFSPGNH Trigger: ATGGTTACCAGGTGAGAAATGTCTCACTGGCAACAGAGGTTGGCAGACCCAGCTCCAGTTCCATCCCAGCCAACATACCAATGTCATTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS GCA 90 bp | TCACAGTTCCAGAGGCCAGAAGTCTCAAACCAAGGTGTTGGCAAGTaGACACTCCTTCCAAACACTAGGAAGGAATCCATTCCTTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: SQFQRPEVSNQGVGK*TLLPNTRKESIPCF Trigger: GAAGCAAGGAATGGATTCCTTCCTAGTGTTTGGAAGGAGTGTGCACTTGCCAACACCTTGGTTTGAGACTTCTGGCCTCTGGAACTGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS TCA 90 bp | TCAGGTGTTGCTGTCCAGACCTCAGGATTCCCAGGCAATTGTACTTaGAGATTCTCGTGTTGGCCTTTTCAGTTCTGCATCAGACCACAA | + |
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Preference number: 5 (lower is better) Translates to: SGVAVQTSGFPGNCT*RFSCWPFQFCIRPQ Trigger: TTGTGGTCTGATGCAGAACTGAAAAGGCCAACACGAGAATCTTCAAGTACAATTGCCTGGGAATCCTGAGGTCTGGACAGCAACACCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549278.2 |
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| CDS GCA 90 bp | TGGCTTGTGGCTGCACCATTCAAACTTCTGCCTACATGGTCACATTaGATCCTCCTCTTCTGTTTCTCTCCACTTATCAGAATACATGCG | + |
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Preference number: 5 (lower is better) Translates to: WLVAAPFKLLPTWSH*ILLFCFSPLIRIHA Trigger: CGCATGTATTCTGATAAGTGGAGAGAAACAGAAGAGGAGGATGCAATGTGACCATGTAGGCAGAAGTTTGAATGGTGCAGCCACAAGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CCA 90 bp | TCATGGAGCAGTGCTACGCCCAGTGTTGAGAGCCTGGCACTCAAATaGCACTTTAGAATGCTTGTTTCTAGTAATAGTCTCCACCTTGAT | + |
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Preference number: 5 (lower is better) Translates to: SWSSATPSVESLALK*HFRMLVSSNSLHLD Trigger: ATCAAGGTGGAGACTATTACTAGAAACAAGCATTCTAAAGTGCCATTTGAGTGCCAGGCTCTCAACACTGGGCGTAGCACTGCTCCATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CCA 90 bp | TCCCCAGGCAGAGCACCAAGGGAATTTCAGGTGGAGGAAACACCATaGTCAAACATACAGATCATGGTGATAGAAGAAACTTGTGAAGAT | + |
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Preference number: 5 (lower is better) Translates to: SPGRAPREFQVEETP*SNIQIMVIEETCED Trigger: ATCTTCACAAGTTTCTTCTATCACCATGATCTGTATGTTTGACCATGGTGTTTCCTCCACCTGAAATTCCCTTGGTGCTCTGCCTGGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS GCA 90 bp | CAAACAAACTTCTGGGGGCATTTTTCTTACAAAGAAGCTTTGAATTaGACAAGGGAATTGGGCCGGATGACTTCCAATGCTCTCTCCATC | + |
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Preference number: 5 (lower is better) Translates to: QTNFWGHFSYKEALN*TRELGRMTSNALSI Trigger: GATGGAGAGAGCATTGGAAGTCATCCGGCCCAATTCCCTTGTGCAATTCAAAGCTTCTTTGTAAGAAAAATGCCCCCAGAAGTTTGTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS GCA 90 bp | CTACGCCCAGTGTTGAGAGCCTGGCACTCAAATGGCACTTTAGAATaGTTGTTTCTAGTAATAGTCTCCACCTTGATGAATGGCCTTATT | + |
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Preference number: 5 (lower is better) Translates to: LRPVLRAWHSNGTLE*LFLVIVSTLMNGLI Trigger: AATAAGGCCATTCATCAAGGTGGAGACTATTACTAGAAACAAGCATTCTAAAGTGCCATTTGAGTGCCAGGCTCTCAACACTGGGCGTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS GCA 90 bp | AGAAGCTTTGAATTGCACAAGGGAATTGGGCCGGATGACTTCCAATaGTCTCTCCATCTTAGGATTCTCTTGAAATATTTTTCACCGAGA | + |
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Preference number: 5 (lower is better) Translates to: RSFELHKGIGPDDFQ*SLHLRILLKYFSPR Trigger: TCTCGGTGAAAAATATTTCAAGAGAATCCTAAGATGGAGAGAGCATTGGAAGTCATCCGGCCCAATTCCCTTGTGCAATTCAAAGCTTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS TCA 90 bp | TCAAATACAGTCTTCATAGAGATGAGAGCGATAACTGACAGTTACTaGGTGCTTACTATATGCCAAGAACTTCCAAGTGAATTCTGTTCT | + |
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Preference number: 5 (lower is better) Translates to: SNTVFIEMRAITDSY*VLTICQELPSEFCS Trigger: AGAACAGAATTCACTTGGAAGTTCTTGGCATATAGTAAGCACTCAGTAACTGTCAGTTATCGCTCTCATCTCTATGAAGACTGTATTTGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549278.2 |
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| CDS GCA 90 bp | TTACATCCCAATAGAGGAAATGGACATGACAGTGAACTAATACCATaGAGAGTGATAGGTGCTTATAAAGTTATAATCAAAGCAGAACTG | + |
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Preference number: 5 (lower is better) Translates to: LHPNRGNGHDSELIP*RVIGAYKVIIKAEL Trigger: CAGTTCTGCTTTGATTATAACTTTATAAGCACCTATCACTCTGCATGGTATTAGTTCACTGTCATGTCCATTTCCTCTATTGGGATGTAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS TCA 90 bp | TTCATGTGTTTATTTTTACTTTCTCATCTACTAGAATGTAAATTCTaGGGCCAGTACCTCCTCTGTCTTGTTCAACTTTATAGTCCCTAC | + |
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Preference number: 5 (lower is better) Translates to: FMCLFLLSHLLECKF*GQYLLCLVQLYSPY Trigger: GTAGGGACTATAAAGTTGAACAAGACAGAGGAGGTACTGGCCTCAGAATTTACATTCTAGTAGATGAGAAAGTAAAAATAAACACATGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CCA 72 bp | TGCTTCTTCCAGCTTCTGATGGCCCCAGGGGCTCCTTaGCTTGTGGCTGCACCATTCAAACTTCTGCCTACA | + |
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Preference number: 6 (lower is better) Translates to: CFFQLLMAPGAP*LVAAPFKLLPT Trigger: TGTAGGCAGAAGTTTGAATGGTGCAGCCACAAGCCAAGGAGCCCCTGGGGCCATCAGAAGCTGGAAGAAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS GCA 72 bp | TTGGTATGTTGGCTGGGATGGAACTGGAGCTGGGTCTaGCAACCTCTGTTGCCAGTGAGACATTTCTCACCT | + |
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Preference number: 6 (lower is better) Translates to: LVCWLGWNWSWV*QPLLPVRHFSP Trigger: AGGTGAGAAATGTCTCACTGGCAACAGAGGTTGGCAGACCCAGCTCCAGTTCCATCCCAGCCAACATACCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS GCA 72 bp | ACACTCCTTCCAAACACTAGGAAGGAATCCATTCCTTaGTTCTTCCAGCTTCTGATGGCCCCAGGGGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: TLLPNTRKESIP*FFQLLMAPGAP Trigger: AGGAGCCCCTGGGGCCATCAGAAGCTGGAAGAAGCAAGGAATGGATTCCTTCCTAGTGTTTGGAAGGAGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CCA 72 bp | ATGACATTGGTATGTTGGCTGGGATGGAACTGGAGCTaGGTCTGCCAACCTCTGTTGCCAGTGAGACATTTC | + |
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Preference number: 6 (lower is better) Translates to: MTLVCWLGWNWS*VCQPLLPVRHF Trigger: GAAATGTCTCACTGGCAACAGAGGTTGGCAGACCCAGCTCCAGTTCCATCCCAGCCAACATACCAATGTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CAA 90 bp | AGTCTCCACCTTGATGAATGGCCTTATTTTAATGACATTGGTATGTaGGCTGGGATGGAACTGGAGCTGGGTCTGCCAACCTCTGTTGCC | + |
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Preference number: 6 (lower is better) Translates to: SLHLDEWPYFNDIGM*AGMELELGLPTSVA Trigger: GGCAACAGAGGTTGGCAGACCCAGCTCCAGTTCCATCCCAGCCAACATACCAATGTCATTAAAATAAGGCCATTCATCAAGGTGGAGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS TCA 72 bp | CCAGAGGAGGAGATCATTCCGTTGAGATTTGAAGAATaGGTAACAGTTCCCCAGGCAGAGCACCAAGGGAAT | + |
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Preference number: 6 (lower is better) Translates to: PEEEIIPLRFEE*VTVPQAEHQGN Trigger: ATTCCCTTGGTGCTCTGCCTGGGGAACTGTTACTCATTCTTCAAATCTCAACGGAATGATCTCCTCCTCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS TCA 72 bp | GCTGTCCAGACCTCAGGATTCCCAGGCAATTGTACTTaGAGATTCTCGTGTTGGCCTTTTCAGTTCTGCATC | + |
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Preference number: 6 (lower is better) Translates to: AVQTSGFPGNCT*RFSCWPFQFCI Trigger: GATGCAGAACTGAAAAGGCCAACACGAGAATCTTCAAGTACAATTGCCTGGGAATCCTGAGGTCTGGACAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549278.2 |
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| CDS GCA 72 bp | CAGAGGCCAGAAGTCTCAAACCAAGGTGTTGGCAAGTaGACACTCCTTCCAAACACTAGGAAGGAATCCATT | + |
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Preference number: 6 (lower is better) Translates to: QRPEVSNQGVGK*TLLPNTRKESI Trigger: AATGGATTCCTTCCTAGTGTTTGGAAGGAGTGTGCACTTGCCAACACCTTGGTTTGAGACTTCTGGCCTCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CAA 90 bp | GCATCCTCCTCTTCTGTTTCTCTCCACTTATCAGAATACATGCGATaGCATCTAGGGCCCTCTCAGACAATCCAGGATAAGCTCCTTGTC | + |
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Preference number: 6 (lower is better) Translates to: ASSSSVSLHLSEYMR*HLGPSQTIQDKLLV Trigger: GACAAGGAGCTTATCCTGGATTGTCTGAGAGGGCCCTAGATGCAATCGCATGTATTCTGATAAGTGGAGAGAAACAGAAGAGGAGGATGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CAA 90 bp | TTCAGGTGTTGCTGTCCAGACCTCAGGATTCCCAGGCAATTGTACTaGAAGATTCTCGTGTTGGCCTTTTCAGTTCTGCATCAGACCACA | + |
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Preference number: 6 (lower is better) Translates to: FRCCCPDLRIPRQLY*KILVLAFSVLHQTT Trigger: TGTGGTCTGATGCAGAACTGAAAAGGCCAACACGAGAATCTTCAAGTACAATTGCCTGGGAATCCTGAGGTCTGGACAGCAACACCTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549278.2 |
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| CDS CAA 90 bp | TTCAGATTCAGGTGTTGCTGTCCAGACCTCAGGATTCCCAGGCAATaGTACTTGAAGATTCTCGTGTTGGCCTTTTCAGTTCTGCATCAG | + |
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Preference number: 6 (lower is better) Translates to: FRFRCCCPDLRIPRQ*YLKILVLAFSVLHQ Trigger: CTGATGCAGAACTGAAAAGGCCAACACGAGAATCTTCAAGTACAATTGCCTGGGAATCCTGAGGTCTGGACAGCAACACCTGAATCTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549278.2 |
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| CDS CAA 72 bp | CTTGATGAATGGCCTTATTTTAATGACATTGGTATGTaGGCTGGGATGGAACTGGAGCTGGGTCTGCCAACC | + |
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Preference number: 6 (lower is better) Translates to: LDEWPYFNDIGM*AGMELELGLPT Trigger: GGTTGGCAGACCCAGCTCCAGTTCCATCCCAGCCAACATACCAATGTCATTAAAATAAGGCCATTCATCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CAA 72 bp | TGCTGTCCAGACCTCAGGATTCCCAGGCAATTGTACTaGAAGATTCTCGTGTTGGCCTTTTCAGTTCTGCAT | + |
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Preference number: 6 (lower is better) Translates to: CCPDLRIPRQLY*KILVLAFSVLH Trigger: ATGCAGAACTGAAAAGGCCAACACGAGAATCTTCAAGTACAATTGCCTGGGAATCCTGAGGTCTGGACAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549278.2 |
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| CDS CAA 90 bp | CTAGTAATAGTCTCCACCTTGATGAATGGCCTTATTTTAATGACATaGGTATGTTGGCTGGGATGGAACTGGAGCTGGGTCTGCCAACCT | + |
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Preference number: 6 (lower is better) Translates to: LVIVSTLMNGLILMT*VCWLGWNWSWVCQP Trigger: AGGTTGGCAGACCCAGCTCCAGTTCCATCCCAGCCAACATACCAATGTCATTAAAATAAGGCCATTCATCAAGGTGGAGACTATTACTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS GCA 72 bp | GCTGCACCATTCAAACTTCTGCCTACATGGTCACATTaGATCCTCCTCTTCTGTTTCTCTCCACTTATCAGA | + |
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Preference number: 6 (lower is better) Translates to: AAPFKLLPTWSH*ILLFCFSPLIR Trigger: TCTGATAAGTGGAGAGAAACAGAAGAGGAGGATGCAATGTGACCATGTAGGCAGAAGTTTGAATGGTGCAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CAA 90 bp | TGGGGGCATTTTTCTTACAAAGAAGCTTTGAATTGCACAAGGGAATaGGGCCGGATGACTTCCAATGCTCTCTCCATCTTAGGATTCTCT | + |
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Preference number: 6 (lower is better) Translates to: WGHFSYKEALNCTRE*GRMTSNALSILGFS Trigger: AGAGAATCCTAAGATGGAGAGAGCATTGGAAGTCATCCGGCCCAATTCCCTTGTGCAATTCAAAGCTTCTTTGTAAGAAAAATGCCCCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CAA 90 bp | CCAGACCTCAGGATTCCCAGGCAATTGTACTTGAAGATTCTCGTGTaGGCCTTTTCAGTTCTGCATCAGACCACAATAATTCTGAAGCAA | + |
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Preference number: 6 (lower is better) Translates to: PDLRIPRQLYLKILV*AFSVLHQTTIILKQ Trigger: TTGCTTCAGAATTATTGTGGTCTGATGCAGAACTGAAAAGGCCAACACGAGAATCTTCAAGTACAATTGCCTGGGAATCCTGAGGTCTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549278.2 |
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| CDS GCA 72 bp | TATGATTCAACCCAAAAGAGATTCAGATTCAGGTGTTaGTGTCCAGACCTCAGGATTCCCAGGCAATTGTAC | + |
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Preference number: 6 (lower is better) Translates to: YDSTQKRFRFRC*CPDLRIPRQLY Trigger: GTACAATTGCCTGGGAATCCTGAGGTCTGGACAGCAACACCTGAATCTGAATCTCTTTTGGGTTGAATCATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549278.2 |
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| CDS CAA 72 bp | TCTTCTGTTTCTCTCCACTTATCAGAATACATGCGATaGCATCTAGGGCCCTCTCAGACAATCCAGGATAAG | + |
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Preference number: 6 (lower is better) Translates to: SSVSLHLSEYMR*HLGPSQTIQDK Trigger: CTTATCCTGGATTGTCTGAGAGGGCCCTAGATGCAATCGCATGTATTCTGATAAGTGGAGAGAAACAGAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CAA 90 bp | CGCCCAGTGTTGAGAGCCTGGCACTCAAATGGCACTTTAGAATGCTaGTTTCTAGTAATAGTCTCCACCTTGATGAATGGCCTTATTTTA | + |
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Preference number: 6 (lower is better) Translates to: RPVLRAWHSNGTLEC*FLVIVSTLMNGLIL Trigger: TAAAATAAGGCCATTCATCAAGGTGGAGACTATTACTAGAAACAAGCATTCTAAAGTGCCATTTGAGTGCCAGGCTCTCAACACTGGGCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS GCA 72 bp | AATAGCCCCACTCTGAGTGCAGTTTATCTTTACTACTaGACTCTGTGCTTTACCCAAACTACACCTATCACA | + |
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Preference number: 6 (lower is better) Translates to: NSPTLSAVYLYY*TLCFTQTTPIT Trigger: TGTGATAGGTGTAGTTTGGGTAAAGCACAGAGTGCAGTAGTAAAGATAAACTGCACTCAGAGTGGGGCTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS TCA 72 bp | TTTGGGGGCAGCTTATCAGTTAACCATGACATTCCATaGAAAGCGTGGACCAACCAACATTTTGTTAGAACA | + |
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Preference number: 6 (lower is better) Translates to: FGGSLSVNHDIP*KAWTNQHFVRT Trigger: TGTTCTAACAAAATGTTGGTTGGTCCACGCTTTTCATGGAATGTCATGGTTAACTGATAAGCTGCCCCCAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000549278.2 |
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| CDS GCA 72 bp | GAATTGCACAAGGGAATTGGGCCGGATGACTTCCAATaGTCTCTCCATCTTAGGATTCTCTTGAAATATTTT | + |
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Preference number: 6 (lower is better) Translates to: ELHKGIGPDDFQ*SLHLRILLKYF Trigger: AAAATATTTCAAGAGAATCCTAAGATGGAGAGAGCATTGGAAGTCATCCGGCCCAATTCCCTTGTGCAATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CCA 72 bp | GTCTTAGGCAGGCACCAGACTGCTCTAAACTTAGTTTaGTGTATTTGTGTCTTTATGTGTATCCGTATGAAC | + |
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Preference number: 6 (lower is better) Translates to: VLGRHQTALNLV*CICVFMCIRMN Trigger: GTTCATACGGATACACATAAAGACACAAATACACCAAACTAAGTTTAGAGCAGTCTGGTGCCTGCCTAAGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CAA 72 bp | TTTTCTTACAAAGAAGCTTTGAATTGCACAAGGGAATaGGGCCGGATGACTTCCAATGCTCTCTCCATCTTA | + |
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Preference number: 6 (lower is better) Translates to: FSYKEALNCTRE*GRMTSNALSIL Trigger: TAAGATGGAGAGAGCATTGGAAGTCATCCGGCCCAATTCCCTTGTGCAATTCAAAGCTTCTTTGTAAGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CAA 72 bp | AGGATTCCCAGGCAATTGTACTTGAAGATTCTCGTGTaGGCCTTTTCAGTTCTGCATCAGACCACAATAATT | + |
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Preference number: 6 (lower is better) Translates to: RIPRQLYLKILV*AFSVLHQTTII Trigger: AATTATTGTGGTCTGATGCAGAACTGAAAAGGCCAACACGAGAATCTTCAAGTACAATTGCCTGGGAATCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549278.2 |
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| CDS TCA 72 bp | GTCTTCATAGAGATGAGAGCGATAACTGACAGTTACTaGGTGCTTACTATATGCCAAGAACTTCCAAGTGAA | + |
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Preference number: 6 (lower is better) Translates to: VFIEMRAITDSY*VLTICQELPSE Trigger: TTCACTTGGAAGTTCTTGGCATATAGTAAGCACTCAGTAACTGTCAGTTATCGCTCTCATCTCTATGAAGAC 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549278.2 |
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| CDS CCA 72 bp | ATGCTTGTTTCTAGTAATAGTCTCCACCTTGATGAATaGCCTTATTTTAATGACATTGGTATGTTGGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: MLVSSNSLHLDE*PYFNDIGMLAG Trigger: CCCAGCCAACATACCAATGTCATTAAAATAAGGCCATTCATCAAGGTGGAGACTATTACTAGAAACAAGCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CAA 72 bp | TTAACAATTGTCCATATTCTGTTTGTGAGGAATGTTTaGTACAGGGAAGAGCCAGACTGGATCCTCAAAATC | + |
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Preference number: 6 (lower is better) Translates to: LTIVHILFVRNV*YREEPDWILKI Trigger: GATTTTGAGGATCCAGTCTGGCTCTTCCCTGTACAAAACATTCCTCACAAACAGAATATGGACAATTGTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS CAA 90 bp | TCAAATGGCACTTTAGAATGCTTGTTTCTAGTAATAGTCTCCACCTaGATGAATGGCCTTATTTTAATGACATTGGTATGTTGGCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: SNGTLECLFLVIVST*MNGLILMTLVCWLG Trigger: TCCCAGCCAACATACCAATGTCATTAAAATAAGGCCATTCATCAAGGTGGAGACTATTACTAGAAACAAGCATTCTAAAGTGCCATTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000500381.2 ENST00000549278.2 |
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| CDS TCA 72 bp | GAGGAAATAAAGTTGAGTTCAGGAATCTTATGGAGATaGTGTCATGTCAAATACAGTCTTCATAGAGATGAG | + |
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Preference number: 6 (lower is better) Translates to: EEIKLSSGILWR*CHVKYSLHRDE Trigger: CTCATCTCTATGAAGACTGTATTTGACATGACATCATCTCCATAAGATTCCTGAACTCAACTTTATTTCCTC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549278.2 |
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