Pregenerated sensors for LINC02454 (Homo sapiens)
Ensembl gene IDs: ENSG00000256268Ensembl transcript IDs: ENST00000539116.1, ENST00000541391.1, ENST00000657815.1, ENST00000670328.1
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCAGTCACCAAGCAGTACACACCGGCTGCCAGAAGCACGTCAGTCTaGGCGGAACCACTCTGGCTCCTTTTCAGGCAAACCTCCTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: AVTKQYTPAARSTSV*AEPLWLLFRQTSFP Trigger: AGGAAAGGAGGTTTGCCTGAAAAGGAGCCAGAGTGGTTCCGCCCAGACTGACGTGCTTCTGGCAGCCGGTGTGTACTGCTTGGTGACTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000541391.1 ENST00000657815.1 |
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| CDS CCA 90 bp | TACACACCGGCTGCCAGAAGCACGTCAGTCTGGGCGGAACCACTCTaGCTCCTTTTCAGGCAAACCTCCTTTCCTCGATCTTTGGGGAGA | + |
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Preference number: 5 (lower is better) Translates to: YTPAARSTSVWAEPL*LLFRQTSFPRSLGR Trigger: TCTCCCCAAAGATCGAGGAAAGGAGGTTTGCCTGAAAAGGAGCCAGAGTGGTTCCGCCCAGACTGACGTGCTTCTGGCAGCCGGTGTGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000541391.1 ENST00000657815.1 |
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| CDS GCA 90 bp | AAGCCTCTTCCATTTCTAGTCTCCATGCACAGCCACTTCCCTGAGTaGATTCCAAATCCCAGATGGAGTCAGGGTACGAGCGTTTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: KPLPFLVSMHSHFPE*IPNPRWSQGTSVCF Trigger: AAAGCAAACGCTCGTACCCTGACTCCATCTGGGATTTGGAATGCACTCAGGGAAGTGGCTGTGCATGGAGACTAGAAATGGAAGAGGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657815.1 |
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| CDS CCA 90 bp | GTCTCCATGCACAGCCACTTCCCTGAGTGCATTCCAAATCCCAGATaGAGTCAGGGTACGAGCGTTTGCTTTGCATACTTGGAATCTAGA | + |
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Preference number: 5 (lower is better) Translates to: VSMHSHFPECIPNPR*SQGTSVCFAYLESR Trigger: TCTAGATTCCAAGTATGCAAAGCAAACGCTCGTACCCTGACTCCATCTGGGATTTGGAATGCACTCAGGGAAGTGGCTGTGCATGGAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657815.1 |
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| CDS GCA 90 bp | CCTGAGTGCATTCCAAATCCCAGATGGAGTCAGGGTACGAGCGTTTaGTTTGCATACTTGGAATCTAGAAGTCATGATGCAAGAAGCTCG | + |
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Preference number: 5 (lower is better) Translates to: PECIPNPRWSQGTSV*FAYLESRSHDARSS Trigger: CGAGCTTCTTGCATCATGACTTCTAGATTCCAAGTATGCAAAGCAAACGCTCGTACCCTGACTCCATCTGGGATTTGGAATGCACTCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657815.1 |
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| CDS TCA 90 bp | TGTTCTCTGTGGGAATGCAACTCTCTTCACAGTAGCTGTAGAATTTaGAGGGAGCCTGAAAGGCATGACCTTGGAAGCCTCTTCCATTTC | + |
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Preference number: 5 (lower is better) Translates to: CSLWECNSLHSSCRI*REPERHDLGSLFHF Trigger: GAAATGGAAGAGGCTTCCAAGGTCATGCCTTTCAGGCTCCCTTCAAATTCTACAGCTACTGTGAAGAGAGTTGCATTCCCACAGAGAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000539116.1 ENST00000541391.1 ENST00000657815.1 ENST00000670328.1 |
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| CDS CCA 90 bp | CAAATCCCAGATGGAGTCAGGGTACGAGCGTTTGCTTTGCATACTTaGAATCTAGAAGTCATGATGCAAGAAGCTCGCATTGCAAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: QIPDGVRVRAFALHT*NLEVMMQEARIARK Trigger: CTTCCTTGCAATGCGAGCTTCTTGCATCATGACTTCTAGATTCCAAGTATGCAAAGCAAACGCTCGTACCCTGACTCCATCTGGGATTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657815.1 |
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| CDS TCA 90 bp | ACAACTGTTATACCAGTACTATTAATATTGTATTCATATTCTAGGTaGGGAAACAACGATTTAGGGAGGTTACATAGCTTGCCCAACATG | + |
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Preference number: 5 (lower is better) Translates to: TTVIPVLLILYSYSR*GNNDLGRLHSLPNM Trigger: CATGTTGGGCAAGCTATGTAACCTCCCTAAATCGTTGTTTCCTCACCTAGAATATGAATACAATATTAATAGTACTGGTATAACAGTTGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670328.1 |
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| CDS CCA 72 bp | AAGCAGTACACACCGGCTGCCAGAAGCACGTCAGTCTaGGCGGAACCACTCTGGCTCCTTTTCAGGCAAACC | + |
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Preference number: 6 (lower is better) Translates to: KQYTPAARSTSV*AEPLWLLFRQT Trigger: GGTTTGCCTGAAAAGGAGCCAGAGTGGTTCCGCCCAGACTGACGTGCTTCTGGCAGCCGGTGTGTACTGCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000541391.1 ENST00000657815.1 |
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| CDS CCA 72 bp | GCTGCCAGAAGCACGTCAGTCTGGGCGGAACCACTCTaGCTCCTTTTCAGGCAAACCTCCTTTCCTCGATCT | + |
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Preference number: 6 (lower is better) Translates to: AARSTSVWAEPL*LLFRQTSFPRS Trigger: AGATCGAGGAAAGGAGGTTTGCCTGAAAAGGAGCCAGAGTGGTTCCGCCCAGACTGACGTGCTTCTGGCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000541391.1 ENST00000657815.1 |
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| CDS GCA 72 bp | CCATTTCTAGTCTCCATGCACAGCCACTTCCCTGAGTaGATTCCAAATCCCAGATGGAGTCAGGGTACGAGC | + |
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Preference number: 6 (lower is better) Translates to: PFLVSMHSHFPE*IPNPRWSQGTS Trigger: GCTCGTACCCTGACTCCATCTGGGATTTGGAATGCACTCAGGGAAGTGGCTGTGCATGGAGACTAGAAATGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000539116.1 ENST00000541391.1 ENST00000657815.1 ENST00000670328.1 |
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| CDS CCA 72 bp | CACAGCCACTTCCCTGAGTGCATTCCAAATCCCAGATaGAGTCAGGGTACGAGCGTTTGCTTTGCATACTTG | + |
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Preference number: 6 (lower is better) Translates to: HSHFPECIPNPR*SQGTSVCFAYL Trigger: CAAGTATGCAAAGCAAACGCTCGTACCCTGACTCCATCTGGGATTTGGAATGCACTCAGGGAAGTGGCTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657815.1 |
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| CDS CAA 72 bp | CAGCTAATGGAGGCTTCATTGTTGAACCACCAAGGGTaGCTCCCTCTGTTTGATGGGGACGAGAAACTTCCC | + |
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Preference number: 6 (lower is better) Translates to: QLMEASLLNHQG*LPLFDGDEKLP Trigger: GGGAAGTTTCTCGTCCCCATCAAACAGAGGGAGCAACCCTTGGTGGTTCAACAATGAAGCCTCCATTAGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000541391.1 ENST00000657815.1 |
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| CDS TCA 72 bp | TCTTCCATTTCTAGTCTCCATGCACAGCCACTTCCCTaGGTGCATTCCAAATCCCAGATGGAGTCAGGGTAC | + |
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Preference number: 6 (lower is better) Translates to: SSISSLHAQPLP*VHSKSQMESGY Trigger: GTACCCTGACTCCATCTGGGATTTGGAATGCACTCAGGGAAGTGGCTGTGCATGGAGACTAGAAATGGAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000539116.1 ENST00000541391.1 ENST00000657815.1 ENST00000670328.1 |
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| CDS TCA 72 bp | TGGGAATGCAACTCTCTTCACAGTAGCTGTAGAATTTaGAGGGAGCCTGAAAGGCATGACCTTGGAAGCCTC | + |
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Preference number: 6 (lower is better) Translates to: WECNSLHSSCRI*REPERHDLGSL Trigger: GAGGCTTCCAAGGTCATGCCTTTCAGGCTCCCTTCAAATTCTACAGCTACTGTGAAGAGAGTTGCATTCCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000539116.1 ENST00000541391.1 ENST00000657815.1 ENST00000670328.1 |
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| CDS CAA 90 bp | CCAAATCCCAGATGGAGTCAGGGTACGAGCGTTTGCTTTGCATACTaGGAATCTAGAAGTCATGATGCAAGAAGCTCGCATTGCAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: PNPRWSQGTSVCFAY*ESRSHDARSSHCKE Trigger: TTCCTTGCAATGCGAGCTTCTTGCATCATGACTTCTAGATTCCAAGTATGCAAAGCAAACGCTCGTACCCTGACTCCATCTGGGATTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657815.1 |
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| CDS CAA 72 bp | GGCAAACCTCCTTTCCTCGATCTTTGGGGAGACCTTTaGTCACAATTTTCCTCCAGTCTGACATGTTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: GKPPFLDLWGDL*SQFSSSLTCSL Trigger: CAGAGAACATGTCAGACTGGAGGAAAATTGTGACAAAAGGTCTCCCCAAAGATCGAGGAAAGGAGGTTTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000541391.1 ENST00000657815.1 |
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| CDS CAA 90 bp | AGTGCATTCCAAATCCCAGATGGAGTCAGGGTACGAGCGTTTGCTTaGCATACTTGGAATCTAGAAGTCATGATGCAAGAAGCTCGCATT | + |
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Preference number: 6 (lower is better) Translates to: SAFQIPDGVRVRAFA*HTWNLEVMMQEARI Trigger: AATGCGAGCTTCTTGCATCATGACTTCTAGATTCCAAGTATGCAAAGCAAACGCTCGTACCCTGACTCCATCTGGGATTTGGAATGCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657815.1 |
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| CDS CCA 72 bp | GATGGAGTCAGGGTACGAGCGTTTGCTTTGCATACTTaGAATCTAGAAGTCATGATGCAAGAAGCTCGCATT | + |
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Preference number: 6 (lower is better) Translates to: DGVRVRAFALHT*NLEVMMQEARI Trigger: AATGCGAGCTTCTTGCATCATGACTTCTAGATTCCAAGTATGCAAAGCAAACGCTCGTACCCTGACTCCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657815.1 |
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| CDS CAA 72 bp | AGATGGAGTCAGGGTACGAGCGTTTGCTTTGCATACTaGGAATCTAGAAGTCATGATGCAAGAAGCTCGCAT | + |
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Preference number: 6 (lower is better) Translates to: RWSQGTSVCFAY*ESRSHDARSSH Trigger: ATGCGAGCTTCTTGCATCATGACTTCTAGATTCCAAGTATGCAAAGCAAACGCTCGTACCCTGACTCCATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657815.1 |
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| CDS GCA 72 bp | ATTCCAAATCCCAGATGGAGTCAGGGTACGAGCGTTTaGTTTGCATACTTGGAATCTAGAAGTCATGATGCA | + |
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Preference number: 6 (lower is better) Translates to: IPNPRWSQGTSV*FAYLESRSHDA Trigger: TGCATCATGACTTCTAGATTCCAAGTATGCAAAGCAAACGCTCGTACCCTGACTCCATCTGGGATTTGGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657815.1 |
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| CDS CAA 72 bp | CAAATCCCAGATGGAGTCAGGGTACGAGCGTTTGCTTaGCATACTTGGAATCTAGAAGTCATGATGCAAGAA | + |
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Preference number: 6 (lower is better) Translates to: QIPDGVRVRAFA*HTWNLEVMMQE Trigger: TTCTTGCATCATGACTTCTAGATTCCAAGTATGCAAAGCAAACGCTCGTACCCTGACTCCATCTGGGATTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657815.1 |
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| CDS CAA 72 bp | CATTCCAAATCCCAGATGGAGTCAGGGTACGAGCGTTaGAACTGTGACACAATTGCCATGAAGAAATATAAG | + |
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Preference number: 6 (lower is better) Translates to: HSKSQMESGYER*NCDTIAMKKYK Trigger: CTTATATTTCTTCATGGCAATTGTGTCACAGTTCAAACGCTCGTACCCTGACTCCATCTGGGATTTGGAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000539116.1 ENST00000541391.1 ENST00000670328.1 |
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| CDS CCA 72 bp | TTGTCACAATTTTCCTCCAGTCTGACATGTTCTCTGTaGGAATGCAACTCTCTTCACAGTAGCTGTAGAATT | + |
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Preference number: 6 (lower is better) Translates to: LSQFSSSLTCSL*ECNSLHSSCRI Trigger: AATTCTACAGCTACTGTGAAGAGAGTTGCATTCCCACAGAGAACATGTCAGACTGGAGGAAAATTGTGACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000539116.1 ENST00000541391.1 ENST00000657815.1 ENST00000670328.1 |
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| CDS CCA 72 bp | CAGAACATGACTTATAATTGGTTGCATAGTCAACCATaGTTGGGCATAAATTGTTTCCAACTTTTTACTCTT | + |
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Preference number: 6 (lower is better) Translates to: QNMTYNWLHSQP*LGINCFQLFTL Trigger: AAGAGTAAAAAGTTGGAAACAATTTATGCCCAACCATGGTTGACTATGCAACCAATTATAAGTCATGTTCTG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000670328.1 |
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| CDS CCA 72 bp | TTGATATTTCCCAACATTCAGAACATGACTTATAATTaGTTGCATAGTCAACCATGGTTGGGCATAAATTGT | + |
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Preference number: 6 (lower is better) Translates to: LIFPNIQNMTYN*LHSQPWLGINC Trigger: ACAATTTATGCCCAACCATGGTTGACTATGCAACCAATTATAAGTCATGTTCTGAATGTTGGGAAATATCAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670328.1 |
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