Pregenerated sensors for LINC02453 (Homo sapiens)
Ensembl gene IDs: ENSG00000245017Ensembl transcript IDs: ENST00000501499.1, ENST00000549004.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AACACCATGTGGGTGAAGGTTAGAGAAACAGATGCTCTCACATATTaGTGGTGGGAGTGTAAACTGGCTCAACCCCTGCGGAGAACAACT | + |
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Preference number: 5 (lower is better) Translates to: NTMWVKVRETDALTY*WWECKLAQPLRRTT Trigger: AGTTGTTCTCCGCAGGGGTTGAGCCAGTTTACACTCCCACCAGCAATATGTGAGAGCATCTGTTTCTCTAACCTTCACCCACATGGTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501499.1 |
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| CDS GCA 90 bp | ATGCTCTCACATATTGCTGGTGGGAGTGTAAACTGGCTCAACCCCTaGGGAGAACAACTTGACGATATCTATCAAAATCTAAAGCGCATG | + |
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Preference number: 5 (lower is better) Translates to: MLSHIAGGSVNWLNP*GEQLDDIYQNLKRM Trigger: CATGCGCTTTAGATTTTGATAGATATCGTCAAGTTGTTCTCCGCAGGGGTTGAGCCAGTTTACACTCCCACCAGCAATATGTGAGAGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000501499.1 |
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| CDS TCA 90 bp | AATACCAGATTGGCACAGATAAAAATTTTGATAACACCATGTGGGTaGAGGTTAGAGAAACAGATGCTCTCACATATTGCTGGTGGGAGT | + |
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Preference number: 5 (lower is better) Translates to: NTRLAQIKILITPCG*RLEKQMLSHIAGGS Trigger: ACTCCCACCAGCAATATGTGAGAGCATCTGTTTCTCTAACCTTCACCCACATGGTGTTATCAAAATTTTTATCTGTGCCAATCTGGTATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000501499.1 |
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| CDS GCA 72 bp | TGGGTGAAGGTTAGAGAAACAGATGCTCTCACATATTaGTGGTGGGAGTGTAAACTGGCTCAACCCCTGCGG | + |
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Preference number: 6 (lower is better) Translates to: WVKVRETDALTY*WWECKLAQPLR Trigger: CCGCAGGGGTTGAGCCAGTTTACACTCCCACCAGCAATATGTGAGAGCATCTGTTTCTCTAACCTTCACCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501499.1 |
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| CDS CCA 72 bp | CAGATGCTCTCACATATTGCTGGTGGGAGTGTAAACTaGCTCAACCCCTGCGGAGAACAACTTGACGATATC | + |
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Preference number: 6 (lower is better) Translates to: QMLSHIAGGSVN*LNPCGEQLDDI Trigger: GATATCGTCAAGTTGTTCTCCGCAGGGGTTGAGCCAGTTTACACTCCCACCAGCAATATGTGAGAGCATCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501499.1 |
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| CDS CCA 72 bp | GTGAAGGTTAGAGAAACAGATGCTCTCACATATTGCTaGTGGGAGTGTAAACTGGCTCAACCCCTGCGGAGA | + |
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Preference number: 6 (lower is better) Translates to: VKVRETDALTYC*WECKLAQPLRR Trigger: TCTCCGCAGGGGTTGAGCCAGTTTACACTCCCACCAGCAATATGTGAGAGCATCTGTTTCTCTAACCTTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501499.1 |
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| CDS TCA 72 bp | GTTTCAAAGACTAAGCCTGCCATGCTTGTCGGTGTGTaGTTCCTTCCTCTAAGATTCCAGACATTCCCGTCT | + |
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Preference number: 6 (lower is better) Translates to: VSKTKPAMLVGV*FLPLRFQTFPS Trigger: AGACGGGAATGTCTGGAATCTTAGAGGAAGGAATCACACACCGACAAGCATGGCAGGCTTAGTCTTTGAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549004.1 |
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| CDS GCA 72 bp | CATATTGCTGGTGGGAGTGTAAACTGGCTCAACCCCTaGGGAGAACAACTTGACGATATCTATCAAAATCTA | + |
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Preference number: 6 (lower is better) Translates to: HIAGGSVNWLNP*GEQLDDIYQNL Trigger: TAGATTTTGATAGATATCGTCAAGTTGTTCTCCGCAGGGGTTGAGCCAGTTTACACTCCCACCAGCAATATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000501499.1 |
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| CDS CAA 72 bp | AATCATTGCTCCATACTCCTTGTTAATAGAATCCATTaGTTCAAGTGGCAATGTGCCAAGCCCCAAGAAACG | + |
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Preference number: 6 (lower is better) Translates to: NHCSILLVNRIH*FKWQCAKPQET Trigger: CGTTTCTTGGGGCTTGGCACATTGCCACTTGAACAAATGGATTCTATTAACAAGGAGTATGGAGCAATGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000501499.1 |
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| CDS CCA 72 bp | CAGATTGGCACAGATAAAAATTTTGATAACACCATGTaGGTGAAGGTTAGAGAAACAGATGCTCTCACATAT | + |
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Preference number: 6 (lower is better) Translates to: QIGTDKNFDNTM*VKVRETDALTY Trigger: ATATGTGAGAGCATCTGTTTCTCTAACCTTCACCCACATGGTGTTATCAAAATTTTTATCTGTGCCAATCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000501499.1 |
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