RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC02447 (Homo sapiens)

Ensembl gene IDs: ENSG00000245468

Ensembl transcript IDs: ENST00000499242.2, ENST00000501888.2, ENST00000504402.1, ENST00000663544.1

Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GAGGCCGAGGAGGGTGAACTATGCAGACAGGTGGCCTGCGAGGGGTaGTGTGCTGCCCTCGGGCTCTGGGCGAGGCCTCTATCCCACCGC +
Preference number: 5 (lower is better)
Translates to: EAEEGELCRQVACEG*CAALGLWARPLSHR
Trigger: GCGGTGGGATAGAGGCCTCGCCCAGAGCCCGAGGGCAGCACAGCACCCCTCGCAGGCCACCTGTCTGCATAGTTCACCCTCCTCGGCCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CCA 90 bp GAGGAGGGAGAGAGGAGGCCGAGGAGGGTGAACTATGCAGACAGGTaGCCTGCGAGGGGTGCTGTGCTGCCCTCGGGCTCTGGGCGAGGC +
Preference number: 5 (lower is better)
Translates to: EEGERRPRRVNYADR*PARGAVLPSGSGRG
Trigger: GCCTCGCCCAGAGCCCGAGGGCAGCACAGCACCCCTCGCAGGCCACCTGTCTGCATAGTTCACCCTCCTCGGCCTCCTCTCTCCCTCCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CCA 90 bp TGCAGACAGGTGGCCTGCGAGGGGTGCTGTGCTGCCCTCGGGCTCTaGGCGAGGCCTCTATCCCACCGCAGGAAAACCCTCCTTGCAGGG +
Preference number: 5 (lower is better)
Translates to: CRQVACEGCCAALGL*ARPLSHRRKTLLAG
Trigger: CCCTGCAAGGAGGGTTTTCCTGCGGTGGGATAGAGGCCTCGCCCAGAGCCCGAGGGCAGCACAGCACCCCTCGCAGGCCACCTGTCTGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS TCA 90 bp AGGGCCCACCTTGGTGGGAGGAGGGAGAGAGGAGGCCGAGGAGGGTaGACTATGCAGACAGGTGGCCTGCGAGGGGTGCTGTGCTGCCCT +
Preference number: 5 (lower is better)
Translates to: RAHLGGRRERGGRGG*TMQTGGLRGVLCCP
Trigger: AGGGCAGCACAGCACCCCTCGCAGGCCACCTGTCTGCATAGTTCACCCTCCTCGGCCTCCTCTCTCCCTCCTCCCACCAAGGTGGGCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS GCA 90 bp CGGGCTCTGGGCGAGGCCTCTATCCCACCGCAGGAAAACCCTCCTTaGAGGGAGCTCATCTTCCGCCTTTCAAAACTTCAGGGCGCTCCT +
Preference number: 5 (lower is better)
Translates to: RALGEASIPPQENPP*RELIFRLSKLQGAP
Trigger: AGGAGCGCCCTGAAGTTTTGAAAGGCGGAAGATGAGCTCCCTGCAAGGAGGGTTTTCCTGCGGTGGGATAGAGGCCTCGCCCAGAGCCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS TCA 90 bp CTGCAGTGCAATTGTTGGGGGAAGCCGGTGAGAAGTCAGGCTTGGTaGGGGCAGATACCTGTTTCTGCCTCCACAGGACGCTGCTCTCAG +
Preference number: 5 (lower is better)
Translates to: LQCNCWGKPVRSQAW*GQIPVSASTGRCSQ
Trigger: CTGAGAGCAGCGTCCTGTGGAGGCAGAAACAGGTATCTGCCCTCACCAAGCCTGACTTCTCACCGGCTTCCCCCAACAATTGCACTGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS GCA 90 bp GAAGCCGGTGAGAAGTCAGGCTTGGTGAGGGCAGATACCTGTTTCTaGCTCCACAGGACGCTGCTCTCAGAAGGCAAAGAGCTCTTGGGC +
Preference number: 5 (lower is better)
Translates to: EAGEKSGLVRADTCF*LHRTLLSEGKELLG
Trigger: GCCCAAGAGCTCTTTGCCTTCTGAGAGCAGCGTCCTGTGGAGGCAGAAACAGGTATCTGCCCTCACCAAGCCTGACTTCTCACCGGCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CCA 90 bp TGCCTGGCTGCCTCGGGTGCAGTGTTTTGTGATAGAATCAAGAGTTaGAACCTGGACCTCTGCTTCTTGGCCCGCTTTCCACTGCGCCGG +
Preference number: 5 (lower is better)
Translates to: CLAASGAVFCDRIKS*NLDLCFLARFPLRR
Trigger: CCGGCGCAGTGGAAAGCGGGCCAAGAAGCAGAGGTCCAGGTTCCAACTCTTGATTCTATCACAAAACACTGCACCCGAGGCAGCCAGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000499242.2
ENST00000501888.2
ENST00000663544.1
CDS CCA 90 bp AGAGGCCATTTAGCTTGGAGAAGGAGGGAGGGGTATGGTAGCTACTaGCAGACTCAGAGGGGCTGTCCTGGCATAGTGTCCAGAGGGCAC +
Preference number: 5 (lower is better)
Translates to: RGHLAWRRREGYGSY*QTQRGCPGIVSRGH
Trigger: GTGCCCTCTGGACACTATGCCAGGACAGCCCCTCTGAGTCTGCCAGTAGCTACCATACCCCTCCCTCCTTCTCCAAGCTAAATGGCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS GCA 90 bp CCAGCACCCAGCAAATGGCGGGGCACTTACGAGGTCTTCGGAAGCTaGCTGGCTGCCTCGGGTGCAGTGTTTTGTGATAGAATCAAGAGT +
Preference number: 5 (lower is better)
Translates to: PAPSKWRGTYEVFGS*LAASGAVFCDRIKS
Trigger: ACTCTTGATTCTATCACAAAACACTGCACCCGAGGCAGCCAGGCAGCTTCCGAAGACCTCGTAAGTGCCCCGCCATTTGCTGGGTGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CCA 90 bp TCCTCAGGCATCGCACAGGGTAACGGCTTGGACCAGCAGCAGCACTaGCTGTTCACAAGCATCTTGTGGTTTTTCAGAGCCCTGTCCTGC +
Preference number: 5 (lower is better)
Translates to: SSGIAQGNGLDQQQH*LFTSILWFFRALSC
Trigger: GCAGGACAGGGCTCTGAAAAACCACAAGATGCTTGTGAACAGCCAGTGCTGCTGCTGGTCCAAGCCGTTACCCTGTGCGATGCCTGAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CCA 90 bp CACCCAGCAAATGGCGGGGCACTTACGAGGTCTTCGGAAGCTGCCTaGCTGCCTCGGGTGCAGTGTTTTGTGATAGAATCAAGAGTTGGA +
Preference number: 5 (lower is better)
Translates to: HPANGGALTRSSEAA*LPRVQCFVIESRVG
Trigger: TCCAACTCTTGATTCTATCACAAAACACTGCACCCGAGGCAGCCAGGCAGCTTCCGAAGACCTCGTAAGTGCCCCGCCATTTGCTGGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CCA 90 bp CCAGCCTGGGCAACAAGAACGAAAACGAGGTCTTCGGAAGCTGCCTaGCTGCCTCGGGTGCAGTGTTTTGTGATAGAATCAAGAGTTGGA +
Preference number: 5 (lower is better)
Translates to: PAWATRTKTRSSEAA*LPRVQCFVIESRVG
Trigger: TCCAACTCTTGATTCTATCACAAAACACTGCACCCGAGGCAGCCAGGCAGCTTCCGAAGACCTCGTTTTCGTTCTTGTTGCCCAGGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS TCA 90 bp CTGTTCTCCTCTGTTGTTTCAGGCCTTGCACAGAGGAGTGCTTGGTaGACATTTGGTGGAGGATACGGAAACCCACGTGGATTCCAGGTG +
Preference number: 5 (lower is better)
Translates to: LFSSVVSGLAQRSAW*TFGGGYGNPRGFQV
Trigger: CACCTGGAATCCACGTGGGTTTCCGTATCCTCCACCAAATGTTCACCAAGCACTCCTCTGTGCAAGGCCTGAAACAACAGAGGAGAACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS GCA 90 bp CTTCCTTTTGTTGCTCATGCTTTGGTGTCAAGGCTAAGAAGCTGTTaGCTCCATGAGGTCCTGGAGACACGGCCCTCTGCTTCTTCTAAG +
Preference number: 5 (lower is better)
Translates to: LPFVAHALVSRLRSC*LHEVLETRPSASSK
Trigger: CTTAGAAGAAGCAGAGGGCCGTGTCTCCAGGACCTCATGGAGGCAACAGCTTCTTAGCCTTGACACCAAAGCATGAGCAACAAAAGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CCA 90 bp GAGGAGTGCTTGGTGAACATTTGGTGGAGGATACGGAAACCCACGTaGATTCCAGGTGCTGACTTTTGTGCCACTACAGAGTCTAGCGTA +
Preference number: 5 (lower is better)
Translates to: EECLVNIWWRIRKPT*IPGADFCATTESSV
Trigger: TACGCTAGACTCTGTAGTGGCACAAAAGTCAGCACCTGGAATCCACGTGGGTTTCCGTATCCTCCACCAAATGTTCACCAAGCACTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS CCA 90 bp CTCTGTTGTTTCAGGCCTTGCACAGAGGAGTGCTTGGTGAACATTTaGTGGAGGATACGGAAACCCACGTGGATTCCAGGTGCTGACTTT +
Preference number: 5 (lower is better)
Translates to: LCCFRPCTEECLVNI*WRIRKPTWIPGADF
Trigger: AAAGTCAGCACCTGGAATCCACGTGGGTTTCCGTATCCTCCACCAAATGTTCACCAAGCACTCCTCTGTGCAAGGCCTGAAACAACAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS TCA 90 bp TTGCAAAAGTTCTGCCAGAAACAGGAATGGATGTGTTTAGGAGAATaGGGTCTTCGGAAGCTGCCTGGCTGCCTCGGGTGCAGTGTTTTG +
Preference number: 5 (lower is better)
Translates to: LQKFCQKQEWMCLGE*GLRKLPGCLGCSVL
Trigger: CAAAACACTGCACCCGAGGCAGCCAGGCAGCTTCCGAAGACCTCATTCTCCTAAACACATCCATTCCTGTTTCTGGCAGAACTTTTGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000504402.1
CDS CCA 90 bp TGTTGTTTCAGGCCTTGCACAGAGGAGTGCTTGGTGAACATTTGGTaGAGGATACGGAAACCCACGTGGATTCCAGGTGCTGACTTTTGT +
Preference number: 5 (lower is better)
Translates to: CCFRPCTEECLVNIW*RIRKPTWIPGADFC
Trigger: ACAAAAGTCAGCACCTGGAATCCACGTGGGTTTCCGTATCCTCCACCAAATGTTCACCAAGCACTCCTCTGTGCAAGGCCTGAAACAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS TCA 90 bp AATGGTCCTGATTCCCATTTCACTTGGCTGAGGCCAACTCGGCCTTaGTCTCCAAATTTCCTTCCAGCGCTGGAAACCTCTTTGGCAATT +
Preference number: 5 (lower is better)
Translates to: NGPDSHFTWLRPTRP*SPNFLPALETSLAI
Trigger: AATTGCCAAAGAGGTTTCCAGCGCTGGAAGGAAATTTGGAGATCAAGGCCGAGTTGGCCTCAGCCAAGTGAAATGGGAATCAGGACCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000504402.1
ENST00000663544.1
CDS GCA 90 bp CAAATCTCTGTTCTCCTCTGTTGTTTCAGGCCTTGCACAGAGGAGTaGTTGGTGAACATTTGGTGGAGGATACGGAAACCCACGTGGATT +
Preference number: 5 (lower is better)
Translates to: QISVLLCCFRPCTEE*LVNIWWRIRKPTWI
Trigger: AATCCACGTGGGTTTCCGTATCCTCCACCAAATGTTCACCAAGCACTCCTCTGTGCAAGGCCTGAAACAACAGAGGAGAACAGAGATTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS GCA 90 bp GCCCACCGTAATCTCCAGTGTGATCTCATCTTAACTAATGACATCTaGACAGCCCCGTTCCCAAATAAGGTCAGAAGGACAGGTAGTGAG +
Preference number: 5 (lower is better)
Translates to: AHRNLQCDLILTNDI*TAPFPNKVRRTGSE
Trigger: CTCACTACCTGTCCTTCTGACCTTATTTGGGAACGGGGCTGTGCAGATGTCATTAGTTAAGATGAGATCACACTGGAGATTACGGTGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS GCA 90 bp AACTCAAAGTTCCAAATCTCTGTTCTCCTCTGTTGTTTCAGGCCTTaGACAGAGGAGTGCTTGGTGAACATTTGGTGGAGGATACGGAAA +
Preference number: 5 (lower is better)
Translates to: NSKFQISVLLCCFRP*TEECLVNIWWRIRK
Trigger: TTTCCGTATCCTCCACCAAATGTTCACCAAGCACTCCTCTGTGCAAGGCCTGAAACAACAGAGGAGAACAGAGATTTGGAACTTTGAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS CCA 90 bp CATAAGCACATGATCAAATGGAAAGCTGGGCTTCGTCTATTACAGTaGGTACCATACAGTTTTACACTCGTGTACCTAAAACAACCTGGA +
Preference number: 5 (lower is better)
Translates to: HKHMIKWKAGLRLLQ*VPYSFTLVYLKQPG
Trigger: TCCAGGTTGTTTTAGGTACACGAGTGTAAAACTGTATGGTACCCACTGTAATAGACGAAGCCCAGCTTTCCATTTGATCATGTGCTTATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS CCA 90 bp ATGGGGATACTTCACAGAAGAGGGTTGCTAAATTGTCAACCATCATaGAAGAAGTGTTCAGTTGCACTGATCATTAGGAAGATGCAAAGT +
Preference number: 5 (lower is better)
Translates to: MGILHRRGLLNCQPS*KKCSVALIIRKMQS
Trigger: ACTTTGCATCTTCCTAATGATCAGTGCAACTGAACACTTCTTCCATGATGGTTGACAATTTAGCAACCCTCTTCTGTGAAGTATCCCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000663544.1
CDS CCA 90 bp CCCATCCTAACATGCTCCGAAGGCTTAAGTATTCTAGGGTCAACTTaGAGTCCAAAATATCATCTAACTACCATTATTAACTCAAAGTTC +
Preference number: 5 (lower is better)
Translates to: PILTCSEGLSILGST*SPKYHLTTIINSKF
Trigger: GAACTTTGAGTTAATAATGGTAGTTAGATGATATTTTGGACTCCAAGTTGACCCTAGAATACTTAAGCCTTCGGAGCATGTTAGGATGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS GCA 72 bp CGCAGAGGCAGGGGCGCTGTGATCCAGGGGCGTCTCTaGAGCGGCGGCGAGACGGTCGTGACAGTCCAACCT +
Preference number: 6 (lower is better)
Translates to: RRGRGAVIQGRL*SGGETVVTVQP
Trigger: AGGTTGGACTGTCACGACCGTCTCGCCGCCGCTGCAGAGACGCCCCTGGATCACAGCGCCCCTGCCTCTGCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CCA 72 bp GTGGCCTGCGAGGGGTGCTGTGCTGCCCTCGGGCTCTaGGCGAGGCCTCTATCCCACCGCAGGAAAACCCTC +
Preference number: 6 (lower is better)
Translates to: VACEGCCAALGL*ARPLSHRRKTL
Trigger: GAGGGTTTTCCTGCGGTGGGATAGAGGCCTCGCCCAGAGCCCGAGGGCAGCACAGCACCCCTCGCAGGCCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS GCA 72 bp GAGGGTGAACTATGCAGACAGGTGGCCTGCGAGGGGTaGTGTGCTGCCCTCGGGCTCTGGGCGAGGCCTCTA +
Preference number: 6 (lower is better)
Translates to: EGELCRQVACEG*CAALGLWARPL
Trigger: TAGAGGCCTCGCCCAGAGCCCGAGGGCAGCACAGCACCCCTCGCAGGCCACCTGTCTGCATAGTTCACCCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CCA 72 bp GAGAGGAGGCCGAGGAGGGTGAACTATGCAGACAGGTaGCCTGCGAGGGGTGCTGTGCTGCCCTCGGGCTCT +
Preference number: 6 (lower is better)
Translates to: ERRPRRVNYADR*PARGAVLPSGS
Trigger: AGAGCCCGAGGGCAGCACAGCACCCCTCGCAGGCCACCTGTCTGCATAGTTCACCCTCCTCGGCCTCCTCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS TCA 72 bp TCCAGGGGCGTCTCTGCAGCGGCGGCGAGACGGTCGTaGCAGTCCAACCTGTCAATCTCCCAGATGGGGGCA +
Preference number: 6 (lower is better)
Translates to: SRGVSAAAARRS*QSNLSISQMGA
Trigger: TGCCCCCATCTGGGAGATTGACAGGTTGGACTGTCACGACCGTCTCGCCGCCGCTGCAGAGACGCCCCTGGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS TCA 72 bp CTTGGTGGGAGGAGGGAGAGAGGAGGCCGAGGAGGGTaGACTATGCAGACAGGTGGCCTGCGAGGGGTGCTG +
Preference number: 6 (lower is better)
Translates to: LGGRRERGGRGG*TMQTGGLRGVL
Trigger: CAGCACCCCTCGCAGGCCACCTGTCTGCATAGTTCACCCTCCTCGGCCTCCTCTCTCCCTCCTCCCACCAAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CCA 72 bp GATCCATCCAACCTCACCCTGAGCAATTTTAGGGGCTaGGCCCTGAGCCCTGTCCAGGGCCGCAGAGGCAGG +
Preference number: 6 (lower is better)
Translates to: DPSNLTLSNFRG*ALSPVQGRRGR
Trigger: CCTGCCTCTGCGGCCCTGGACAGGGCTCAGGGCCCAGCCCCTAAAATTGCTCAGGGTGAGGTTGGATGGATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CAA 72 bp GCCCTGGTGAGTCAGATGGAGAACAAAGGGCCCACCTaGGTGGGAGGAGGGAGAGAGGAGGCCGAGGAGGGT +
Preference number: 6 (lower is better)
Translates to: ALVSQMENKGPT*VGGGREEAEEG
Trigger: ACCCTCCTCGGCCTCCTCTCTCCCTCCTCCCACCAAGGTGGGCCCTTTGTTCTCCATCTGACTCACCAGGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CAA 90 bp GGGGAAGGAGCCCTGGTGAGTCAGATGGAGAACAAAGGGCCCACCTaGGTGGGAGGAGGGAGAGAGGAGGCCGAGGAGGGTGAACTATGC +
Preference number: 6 (lower is better)
Translates to: GEGALVSQMENKGPT*VGGGREEAEEGELC
Trigger: GCATAGTTCACCCTCCTCGGCCTCCTCTCTCCCTCCTCCCACCAAGGTGGGCCCTTTGTTCTCCATCTGACTCACCAGGGCTCCTTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS GCA 72 bp TTCACAAGCATCTTGTGGTTTTTCAGAGCCCTGTCCTaGCGCTTGGGGCAGCACTTCCTCCCGCCGGGCCCT +
Preference number: 6 (lower is better)
Translates to: FTSILWFFRALS*RLGQHFLPPGP
Trigger: AGGGCCCGGCGGGAGGAAGTGCTGCCCCAAGCGGCAGGACAGGGCTCTGAAAAACCACAAGATGCTTGTGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CAA 72 bp TCAGGGCGCTCCTCAGGCATCGCACAGGGTAACGGCTaGGACCAGCAGCAGCACTGGCTGTTCACAAGCATC +
Preference number: 6 (lower is better)
Translates to: SGRSSGIAQGNG*DQQQHWLFTSI
Trigger: GATGCTTGTGAACAGCCAGTGCTGCTGCTGGTCCAAGCCGTTACCCTGTGCGATGCCTGAGGAGCGCCCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CAA 90 bp GAACCTGCAGTGCAATTGTTGGGGGAAGCCGGTGAGAAGTCAGGCTaGGTGAGGGCAGATACCTGTTTCTGCCTCCACAGGACGCTGCTC +
Preference number: 6 (lower is better)
Translates to: EPAVQLLGEAGEKSG*VRADTCFCLHRTLL
Trigger: GAGCAGCGTCCTGTGGAGGCAGAAACAGGTATCTGCCCTCACCAAGCCTGACTTCTCACCGGCTTCCCCCAACAATTGCACTGCAGGTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CAA 90 bp GGTAACGGCTTGGACCAGCAGCAGCACTGGCTGTTCACAAGCATCTaGTGGTTTTTCAGAGCCCTGTCCTGCCGCTTGGGGCAGCACTTC +
Preference number: 6 (lower is better)
Translates to: GNGLDQQQHWLFTSI*WFFRALSCRLGQHF
Trigger: GAAGTGCTGCCCCAAGCGGCAGGACAGGGCTCTGAAAAACCACAAGATGCTTGTGAACAGCCAGTGCTGCTGCTGGTCCAAGCCGTTACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CAA 90 bp CGCTGGAAACCTCTTTGGCAATTGGGGGTAATCACCCCTCTGATGTaGCTGCATCCAAGAGGTCTTCGGAAGCTGCCTGGCTGCCTCGGG +
Preference number: 6 (lower is better)
Translates to: RWKPLWQLGVITPLM*LHPRGLRKLPGCLG
Trigger: CCCGAGGCAGCCAGGCAGCTTCCGAAGACCTCTTGGATGCAGCAACATCAGAGGGGTGATTACCCCCAATTGCCAAAGAGGTTTCCAGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000663544.1
CDS GCA 72 bp CGCCCAAATCCCATAGCCCTTATCACGTGCTGTGGATaGCAACACGCAGCCAAGCCACTGTTTCTGGGGAGC +
Preference number: 6 (lower is better)
Translates to: RPNPIALITCCG*QHAAKPLFLGS
Trigger: GCTCCCCAGAAACAGTGGCTTGGCTGCGTGTTGGCATCCACAGCACGTGATAAGGGCTATGGGATTTGGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CCA 72 bp GGGTCGCCCAAATCCCATAGCCCTTATCACGTGCTGTaGATGCCAACACGCAGCCAAGCCACTGTTTCTGGG +
Preference number: 6 (lower is better)
Translates to: GSPKSHSPYHVL*MPTRSQATVSG
Trigger: CCCAGAAACAGTGGCTTGGCTGCGTGTTGGCATCCACAGCACGTGATAAGGGCTATGGGATTTGGGCGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS TCA 72 bp AATTGTTGGGGGAAGCCGGTGAGAAGTCAGGCTTGGTaGGGGCAGATACCTGTTTCTGCCTCCACAGGACGC +
Preference number: 6 (lower is better)
Translates to: NCWGKPVRSQAW*GQIPVSASTGR
Trigger: GCGTCCTGTGGAGGCAGAAACAGGTATCTGCCCTCACCAAGCCTGACTTCTCACCGGCTTCCCCCAACAATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS GCA 72 bp AGCAAATGGCGGGGCACTTACGAGGTCTTCGGAAGCTaGCTGGCTGCCTCGGGTGCAGTGTTTTGTGATAGA +
Preference number: 6 (lower is better)
Translates to: SKWRGTYEVFGS*LAASGAVFCDR
Trigger: TCTATCACAAAACACTGCACCCGAGGCAGCCAGGCAGCTTCCGAAGACCTCGTAAGTGCCCCGCCATTTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CCA 72 bp TTAGCTTGGAGAAGGAGGGAGGGGTATGGTAGCTACTaGCAGACTCAGAGGGGCTGTCCTGGCATAGTGTCC +
Preference number: 6 (lower is better)
Translates to: LAWRRREGYGSY*QTQRGCPGIVS
Trigger: GGACACTATGCCAGGACAGCCCCTCTGAGTCTGCCAGTAGCTACCATACCCCTCCCTCCTTCTCCAAGCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CAA 72 bp GTGCAATTGTTGGGGGAAGCCGGTGAGAAGTCAGGCTaGGTGAGGGCAGATACCTGTTTCTGCCTCCACAGG +
Preference number: 6 (lower is better)
Translates to: VQLLGEAGEKSG*VRADTCFCLHR
Trigger: CCTGTGGAGGCAGAAACAGGTATCTGCCCTCACCAAGCCTGACTTCTCACCGGCTTCCCCCAACAATTGCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CAA 72 bp AGGAAGGAAAAGCGTGCGGAACCTGCAGTGCAATTGTaGGGGGAAGCCGGTGAGAAGTCAGGCTTGGTGAGG +
Preference number: 6 (lower is better)
Translates to: RKEKRAEPAVQL*GEAGEKSGLVR
Trigger: CCTCACCAAGCCTGACTTCTCACCGGCTTCCCCCAACAATTGCACTGCAGGTTCCGCACGCTTTTCCTTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CAA 72 bp TTGGACCAGCAGCAGCACTGGCTGTTCACAAGCATCTaGTGGTTTTTCAGAGCCCTGTCCTGCCGCTTGGGG +
Preference number: 6 (lower is better)
Translates to: LDQQQHWLFTSI*WFFRALSCRLG
Trigger: CCCCAAGCGGCAGGACAGGGCTCTGAAAAACCACAAGATGCTTGTGAACAGCCAGTGCTGCTGCTGGTCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS GCA 72 bp GAGAAGTCAGGCTTGGTGAGGGCAGATACCTGTTTCTaGCTCCACAGGACGCTGCTCTCAGAAGGCAAAGAG +
Preference number: 6 (lower is better)
Translates to: EKSGLVRADTCF*LHRTLLSEGKE
Trigger: CTCTTTGCCTTCTGAGAGCAGCGTCCTGTGGAGGCAGAAACAGGTATCTGCCCTCACCAAGCCTGACTTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS GCA 72 bp GTTGCTCATGCTTTGGTGTCAAGGCTAAGAAGCTGTTaGCTCCATGAGGTCCTGGAGACACGGCCCTCTGCT +
Preference number: 6 (lower is better)
Translates to: VAHALVSRLRSC*LHEVLETRPSA
Trigger: AGCAGAGGGCCGTGTCTCCAGGACCTCATGGAGGCAACAGCTTCTTAGCCTTGACACCAAAGCATGAGCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CCA 72 bp AATGGCGGGGCACTTACGAGGTCTTCGGAAGCTGCCTaGCTGCCTCGGGTGCAGTGTTTTGTGATAGAATCA +
Preference number: 6 (lower is better)
Translates to: NGGALTRSSEAA*LPRVQCFVIES
Trigger: TGATTCTATCACAAAACACTGCACCCGAGGCAGCCAGGCAGCTTCCGAAGACCTCGTAAGTGCCCCGCCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CAA 72 bp GAAAGGAAGGAAAAGCGTGCGGAACCTGCAGTGCAATaGTTGGGGGAAGCCGGTGAGAAGTCAGGCTTGGTG +
Preference number: 6 (lower is better)
Translates to: ERKEKRAEPAVQ*LGEAGEKSGLV
Trigger: CACCAAGCCTGACTTCTCACCGGCTTCCCCCAACAATTGCACTGCAGGTTCCGCACGCTTTTCCTTCCTTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CAA 90 bp AAGAAGGAAAGGAAGGAAAAGCGTGCGGAACCTGCAGTGCAATTGTaGGGGGAAGCCGGTGAGAAGTCAGGCTTGGTGAGGGCAGATACC +
Preference number: 6 (lower is better)
Translates to: KKERKEKRAEPAVQL*GEAGEKSGLVRADT
Trigger: GGTATCTGCCCTCACCAAGCCTGACTTCTCACCGGCTTCCCCCAACAATTGCACTGCAGGTTCCGCACGCTTTTCCTTCCTTTCCTTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CAA 90 bp GACAAGAAGGAAAGGAAGGAAAAGCGTGCGGAACCTGCAGTGCAATaGTTGGGGGAAGCCGGTGAGAAGTCAGGCTTGGTGAGGGCAGAT +
Preference number: 6 (lower is better)
Translates to: DKKERKEKRAEPAVQ*LGEAGEKSGLVRAD
Trigger: ATCTGCCCTCACCAAGCCTGACTTCTCACCGGCTTCCCCCAACAATTGCACTGCAGGTTCCGCACGCTTTTCCTTCCTTTCCTTCTTGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CAA 90 bp TTCAAAACTTCAGGGCGCTCCTCAGGCATCGCACAGGGTAACGGCTaGGACCAGCAGCAGCACTGGCTGTTCACAAGCATCTTGTGGTTT +
Preference number: 6 (lower is better)
Translates to: FKTSGRSSGIAQGNG*DQQQHWLFTSILWF
Trigger: AAACCACAAGATGCTTGTGAACAGCCAGTGCTGCTGCTGGTCCAAGCCGTTACCCTGTGCGATGCCTGAGGAGCGCCCTGAAGTTTTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS GCA 72 bp CTGGGCAACAAGAACGAAAACGAGGTCTTCGGAAGCTaGCTGGCTGCCTCGGGTGCAGTGTTTTGTGATAGA +
Preference number: 6 (lower is better)
Translates to: LGNKNENEVFGS*LAASGAVFCDR
Trigger: TCTATCACAAAACACTGCACCCGAGGCAGCCAGGCAGCTTCCGAAGACCTCGTTTTCGTTCTTGTTGCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS GCA 72 bp CAACCACCACCATCTATTGACTTACTCAACGTTTACTaGACACCTACTGTGTGCAGGGGTCCTGGGGACCCC +
Preference number: 6 (lower is better)
Translates to: QPPPSIDLLNVY*TPTVCRGPGDP
Trigger: GGGGTCCCCAGGACCCCTGCACACAGTAGGTGTGCAGTAAACGTTGAGTAAGTCAATAGATGGTGGTGGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS GCA 72 bp AGAAGGAAAGGAAGGAAAAGCGTGCGGAACCTGCAGTaGAATTGTTGGGGGAAGCCGGTGAGAAGTCAGGCT +
Preference number: 6 (lower is better)
Translates to: RRKGRKSVRNLQ*NCWGKPVRSQA
Trigger: AGCCTGACTTCTCACCGGCTTCCCCCAACAATTGCACTGCAGGTTCCGCACGCTTTTCCTTCCTTTCCTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS TCA 72 bp CAGAGAGAGGAGAGGACTAAACCGTCAGCGGGACTGTaGGTTCCCGGAGGCAGGGCTGAGTCTTTTATTTTT +
Preference number: 6 (lower is better)
Translates to: QREERTKPSAGL*VPGGRAESFIF
Trigger: AAAAATAAAAGACTCAGCCCTGCCTCCGGGAACTCACAGTCCCGCTGACGGTTTAGTCCTCTCCTCTCTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS CCA 72 bp GCCTCGGGTGCAGTGTTTTGTGATAGAATCAAGAGTTaGAACCTGGACCTCTGCTTCTTGGCCCGCTTTCCA +
Preference number: 6 (lower is better)
Translates to: ASGAVFCDRIKS*NLDLCFLARFP
Trigger: TGGAAAGCGGGCCAAGAAGCAGAGGTCCAGGTTCCAACTCTTGATTCTATCACAAAACACTGCACCCGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000499242.2
ENST00000501888.2
ENST00000663544.1
CDS CCA 72 bp TTCAGGCCTTGCACAGAGGAGTGCTTGGTGAACATTTaGTGGAGGATACGGAAACCCACGTGGATTCCAGGT +
Preference number: 6 (lower is better)
Translates to: FRPCTEECLVNI*WRIRKPTWIPG
Trigger: ACCTGGAATCCACGTGGGTTTCCGTATCCTCCACCAAATGTTCACCAAGCACTCCTCTGTGCAAGGCCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS CAA 72 bp CTCCTCTGTTGTTTCAGGCCTTGCACAGAGGAGTGCTaGGTGAACATTTGGTGGAGGATACGGAAACCCACG +
Preference number: 6 (lower is better)
Translates to: LLCCFRPCTEEC*VNIWWRIRKPT
Trigger: CGTGGGTTTCCGTATCCTCCACCAAATGTTCACCAAGCACTCCTCTGTGCAAGGCCTGAAACAACAGAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS TCA 72 bp GATTCCCATTTCACTTGGCTGAGGCCAACTCGGCCTTaGTCTCCAAATTTCCTTCCAGCGCTGGAAACCTCT +
Preference number: 6 (lower is better)
Translates to: DSHFTWLRPTRP*SPNFLPALETS
Trigger: AGAGGTTTCCAGCGCTGGAAGGAAATTTGGAGATCAAGGCCGAGTTGGCCTCAGCCAAGTGAAATGGGAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000504402.1
ENST00000663544.1
CDS TCA 72 bp TCTGTTGTTTCAGGCCTTGCACAGAGGAGTGCTTGGTaGACATTTGGTGGAGGATACGGAAACCCACGTGGA +
Preference number: 6 (lower is better)
Translates to: SVVSGLAQRSAW*TFGGGYGNPRG
Trigger: TCCACGTGGGTTTCCGTATCCTCCACCAAATGTTCACCAAGCACTCCTCTGTGCAAGGCCTGAAACAACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS CCA 72 bp GCAACAAGAACGAAAACGAGGTCTTCGGAAGCTGCCTaGCTGCCTCGGGTGCAGTGTTTTGTGATAGAATCA +
Preference number: 6 (lower is better)
Translates to: ATRTKTRSSEAA*LPRVQCFVIES
Trigger: TGATTCTATCACAAAACACTGCACCCGAGGCAGCCAGGCAGCTTCCGAAGACCTCGTTTTCGTTCTTGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS CAA 90 bp CTTGATCTCCAAATTTCCTTCCAGCGCTGGAAACCTCTTTGGCAATaGGGGGTAATCACCCCTCTGATGTTGCTGCATCCAACTGGGATG +
Preference number: 6 (lower is better)
Translates to: LDLQISFQRWKPLWQ*GVITPLMLLHPTGM
Trigger: CATCCCAGTTGGATGCAGCAACATCAGAGGGGTGATTACCCCCAATTGCCAAAGAGGTTTCCAGCGCTGGAAGGAAATTTGGAGATCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000504402.1
CDS CAA 90 bp ATCTCTGTTCTCCTCTGTTGTTTCAGGCCTTGCACAGAGGAGTGCTaGGTGAACATTTGGTGGAGGATACGGAAACCCACGTGGATTCCA +
Preference number: 6 (lower is better)
Translates to: ISVLLCCFRPCTEEC*VNIWWRIRKPTWIP
Trigger: TGGAATCCACGTGGGTTTCCGTATCCTCCACCAAATGTTCACCAAGCACTCCTCTGTGCAAGGCCTGAAACAACAGAGGAGAACAGAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS CCA 72 bp GATGTGTTTAGGAGAATGAGGTCTTCGGAAGCTGCCTaGCTGCCTCGGGTGCAGTGTTTTGTGATAGAATCA +
Preference number: 6 (lower is better)
Translates to: DVFRRMRSSEAA*LPRVQCFVIES
Trigger: TGATTCTATCACAAAACACTGCACCCGAGGCAGCCAGGCAGCTTCCGAAGACCTCATTCTCCTAAACACATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000504402.1
CDS CCA 72 bp TTGGTGAACATTTGGTGGAGGATACGGAAACCCACGTaGATTCCAGGTGCTGACTTTTGTGCCACTACAGAG +
Preference number: 6 (lower is better)
Translates to: LVNIWWRIRKPT*IPGADFCATTE
Trigger: CTCTGTAGTGGCACAAAAGTCAGCACCTGGAATCCACGTGGGTTTCCGTATCCTCCACCAAATGTTCACCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS CAA 72 bp CAAATTTCCTTCCAGCGCTGGAAACCTCTTTGGCAATaGGGGGTAATCACCCCTCTGATGTTGCTGCATCCA +
Preference number: 6 (lower is better)
Translates to: QISFQRWKPLWQ*GVITPLMLLHP
Trigger: TGGATGCAGCAACATCAGAGGGGTGATTACCCCCAATTGCCAAAGAGGTTTCCAGCGCTGGAAGGAAATTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000504402.1
ENST00000663544.1
CDS CAA 90 bp CTTGATCTCCAAATTTCCTTCCAGCGCTGGAAACCTCTTTGGCAATaGGGGGTAATCACCCCTCTGATGTTGCTGCATCCAAGAGGTCTT +
Preference number: 6 (lower is better)
Translates to: LDLQISFQRWKPLWQ*GVITPLMLLHPRGL
Trigger: AAGACCTCTTGGATGCAGCAACATCAGAGGGGTGATTACCCCCAATTGCCAAAGAGGTTTCCAGCGCTGGAAGGAAATTTGGAGATCAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000663544.1
CDS CAA 90 bp GACAGACAACCCCATGGACAGATGGGGATACTTCACAGAAGAGGGTaGCTAAATTGTCAACCATCATGGAAGAAGTGTTCAGTTGCACTG +
Preference number: 6 (lower is better)
Translates to: DRQPHGQMGILHRRG*LNCQPSWKKCSVAL
Trigger: CAGTGCAACTGAACACTTCTTCCATGATGGTTGACAATTTAGCAACCCTCTTCTGTGAAGTATCCCCATCTGTCCATGGGGTTGTCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000663544.1
CDS TCA 72 bp CTGATCATTAGGAAGATGCAAAGTAAAACCGCAACATaGAATCACTACATCCTCACCCGGCCCACGCCTGAA +
Preference number: 6 (lower is better)
Translates to: LIIRKMQSKTAT*NHYILTRPTPE
Trigger: TTCAGGCGTGGGCCGGGTGAGGATGTAGTGATTTCATGTTGCGGTTTTACTTTGCATCTTCCTAATGATCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000663544.1
CDS TCA 72 bp TTCTTTGTAATGGTCCTGATTCCCATTTCACTTGGCTaGGGCCAACTCGGCCTTGATCTCCAAATTTCCTTC +
Preference number: 6 (lower is better)
Translates to: FFVMVLIPISLG*GQLGLDLQISF
Trigger: GAAGGAAATTTGGAGATCAAGGCCGAGTTGGCCTCAGCCAAGTGAAATGGGAATCAGGACCATTACAAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000504402.1
ENST00000663544.1
CDS TCA 72 bp AACATGAAATCACTACATCCTCACCCGGCCCACGCCTaGAATGAAAAAGACAGCAAATATCAAAAGCTGGGG +
Preference number: 6 (lower is better)
Translates to: NMKSLHPHPAHA*NEKDSKYQKLG
Trigger: CCCCAGCTTTTGATATTTGCTGTCTTTTTCATTTCAGGCGTGGGCCGGGTGAGGATGTAGTGATTTCATGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000663544.1
CDS CAA 72 bp CCCCATGGACAGATGGGGATACTTCACAGAAGAGGGTaGCTAAATTGTCAACCATCATGGAAGAAGTGTTCA +
Preference number: 6 (lower is better)
Translates to: PHGQMGILHRRG*LNCQPSWKKCS
Trigger: TGAACACTTCTTCCATGATGGTTGACAATTTAGCAACCCTCTTCTGTGAAGTATCCCCATCTGTCCATGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000663544.1
CDS CAA 90 bp TCTAAGAGCTTGATCATTCTAGTGCTTGCCTTTAGTTCTTTGTTTTaGAGGGAACAGAGGCCATTTAGCTTGGAGAAGGAGGGAGGGGTA +
Preference number: 6 (lower is better)
Translates to: SKSLIILVLAFSSLF*REQRPFSLEKEGGV
Trigger: TACCCCTCCCTCCTTCTCCAAGCTAAATGGCCTCTGTTCCCTCAAAAACAAAGAACTAAAGGCAAGCACTAGAATGATCAAGCTCTTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS TCA 72 bp TACATTAGGAAGACGATGCCAACCACCACCATCTATTaGCTTACTCAACGTTTACTGCACACCTACTGTGTG +
Preference number: 6 (lower is better)
Translates to: YIRKTMPTTTIY*LTQRLLHTYCV
Trigger: CACACAGTAGGTGTGCAGTAAACGTTGAGTAAGTCAATAGATGGTGGTGGTTGGCATCGTCTTCCTAATGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS CAA 72 bp ACAGATGGGGATACTTCACAGAAGAGGGTTGCTAAATaGTCAACCATCATGGAAGAAGTGTTCAGTTGCACT +
Preference number: 6 (lower is better)
Translates to: TDGDTSQKRVAK*STIMEEVFSCT
Trigger: AGTGCAACTGAACACTTCTTCCATGATGGTTGACAATTTAGCAACCCTCTTCTGTGAAGTATCCCCATCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000663544.1
CDS CCA 72 bp CTTCACAGAAGAGGGTTGCTAAATTGTCAACCATCATaGAAGAAGTGTTCAGTTGCACTGATCATTAGGAAG +
Preference number: 6 (lower is better)
Translates to: LHRRGLLNCQPS*KKCSVALIIRK
Trigger: CTTCCTAATGATCAGTGCAACTGAACACTTCTTCCATGATGGTTGACAATTTAGCAACCCTCTTCTGTGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000663544.1
CDS CCA 72 bp ATGATCAAATGGAAAGCTGGGCTTCGTCTATTACAGTaGGTACCATACAGTTTTACACTCGTGTACCTAAAA +
Preference number: 6 (lower is better)
Translates to: MIKWKAGLRLLQ*VPYSFTLVYLK
Trigger: TTTTAGGTACACGAGTGTAAAACTGTATGGTACCCACTGTAATAGACGAAGCCCAGCTTTCCATTTGATCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000499242.2
CDS CAA 72 bp TCCAATTTATTTATTCTTCCTTTTGTTGCTCATGCTTaGGTGTCAAGGCTAAGAAGCTGTTGCCTCCATGAG +
Preference number: 6 (lower is better)
Translates to: SNLFILPFVAHA*VSRLRSCCLHE
Trigger: CTCATGGAGGCAACAGCTTCTTAGCCTTGACACCAAAGCATGAGCAACAAAAGGAAGAATAAATAAATTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000501888.2
CDS TCA 72 bp GCATCTGAGTCATTTGGAGAGGGTTTTAGGAGTCATTaGGAAGATGAAATGGATACATTTTGGGACTCATTT +
Preference number: 6 (lower is better)
Translates to: ASESFGEGFRSH*EDEMDTFWDSF
Trigger: AAATGAGTCCCAAAATGTATCCATTTCATCTTCTCAATGACTCCTAAAACCCTCTCCAAATGACTCAGATGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000663544.1
CDS TCA 72 bp ATTGTCAACCATCATGGAAGAAGTGTTCAGTTGCACTaGTCATTAGGAAGATGCAAAGTAAAACCGCAACAT +
Preference number: 6 (lower is better)
Translates to: IVNHHGRSVQLH*SLGRCKVKPQH
Trigger: ATGTTGCGGTTTTACTTTGCATCTTCCTAATGATCAGTGCAACTGAACACTTCTTCCATGATGGTTGACAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000663544.1
CDS CCA 72 bp ACATGCTCCGAAGGCTTAAGTATTCTAGGGTCAACTTaGAGTCCAAAATATCATCTAACTACCATTATTAAC +
Preference number: 6 (lower is better)
Translates to: TCSEGLSILGST*SPKYHLTTIIN
Trigger: GTTAATAATGGTAGTTAGATGATATTTTGGACTCCAAGTTGACCCTAGAATACTTAAGCCTTCGGAGCATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000499242.2