Pregenerated sensors for LINC02446 (Homo sapiens)
Ensembl gene IDs: ENSG00000256039Ensembl transcript IDs: ENST00000544591.1, ENST00000652990.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GACGGTCCCTGCTTTCCTGCCTCTTACGAGAATCCCACTTGTGAATaGAGAGTTCAGTTCAGCTTTATCTTGACCAGGTGCGAGACTGCC | + |
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Preference number: 5 (lower is better) Translates to: DGPCFPASYENPTCE*RVQFSFILTRCETA Trigger: GGCAGTCTCGCACCTGGTCAAGATAAAGCTGAACTGAACTCTTCATTCACAAGTGGGATTCTCGTAAGAGGCAGGAAAGCAGGGACCGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000544591.1 ENST00000652990.1 |
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| CDS GCA 90 bp | AAATCTCCTGCCATTCTCAGAAGTTACTCGCTTTCCCAGCACCCTTaGAGCTACAGAGTGTCCATATGGCCCACCTCTGGCCATCAAACT | + |
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Preference number: 5 (lower is better) Translates to: KSPAILRSYSLSQHP*SYRVSIWPTSGHQT Trigger: AGTTTGATGGCCAGAGGTGGGCCATATGGACACTCTGTAGCTGCAAGGGTGCTGGGAAAGCGAGTAACTTCTGAGAATGGCAGGAGATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652990.1 |
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| CDS TCA 90 bp | GACAGACGGTCCCTGCTTTCCTGCCTCTTACGAGAATCCCACTTGTaGATGAAGAGTTCAGTTCAGCTTTATCTTGACCAGGTGCGAGAC | + |
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Preference number: 5 (lower is better) Translates to: DRRSLLSCLLRESHL*MKSSVQLYLDQVRD Trigger: GTCTCGCACCTGGTCAAGATAAAGCTGAACTGAACTCTTCATTCACAAGTGGGATTCTCGTAAGAGGCAGGAAAGCAGGGACCGTCTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000544591.1 ENST00000652990.1 |
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| CDS TCA 90 bp | GTTCAGTTCAGCTTTATCTTGACCAGGTGCGAGACTGCCCCTTTGTaGTTCTCAATCCCACACAGGGTGTCCAAGTTTCCTATCTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: VQFSFILTRCETAPL*FSIPHRVSKFPIFS Trigger: GGAGAAGATAGGAAACTTGGACACCCTGTGTGGGATTGAGAATCACAAAGGGGCAGTCTCGCACCTGGTCAAGATAAAGCTGAACTGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000544591.1 ENST00000652990.1 |
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| CDS TCA 90 bp | ACGAGAATCCCACTTGTGAATGAAGAGTTCAGTTCAGCTTTATCTTaGCCAGGTGCGAGACTGCCCCTTTGTGATTCTCAATCCCACACA | + |
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Preference number: 5 (lower is better) Translates to: TRIPLVNEEFSSALS*PGARLPLCDSQSHT Trigger: TGTGTGGGATTGAGAATCACAAAGGGGCAGTCTCGCACCTGGTCAAGATAAAGCTGAACTGAACTCTTCATTCACAAGTGGGATTCTCGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000544591.1 ENST00000652990.1 |
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| CDS TCA 90 bp | AAAGAGCCTTCTTGGATCCCTGACTTTCGTATTTATTTTGGAGTATaGATAATAGGCCCTCAAAAATTTGTTGATGTCTGGTTAAAGGTT | + |
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Preference number: 5 (lower is better) Translates to: KEPSWIPDFRIYFGV*IIGPQKFVDVWLKV Trigger: AACCTTTAACCAGACATCAACAAATTTTTGAGGGCCTATTATTCATACTCCAAAATAAATACGAAAGTCAGGGATCCAAGAAGGCTCTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000652990.1 |
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| CDS GCA 72 bp | GCCATTCTCAGAAGTTACTCGCTTTCCCAGCACCCTTaGAGCTACAGAGTGTCCATATGGCCCACCTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: AILRSYSLSQHP*SYRVSIWPTSG Trigger: GCCAGAGGTGGGCCATATGGACACTCTGTAGCTGCAAGGGTGCTGGGAAAGCGAGTAACTTCTGAGAATGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652990.1 |
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| CDS GCA 72 bp | CACCTCTTCTTGCTGTCTGTAGTGACAGACGGTCCCTaGTTTCCTGCCTCTTACGAGAATCCCACTTGTGAA | + |
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Preference number: 6 (lower is better) Translates to: HLFLLSVVTDGP*FPASYENPTCE Trigger: TTCACAAGTGGGATTCTCGTAAGAGGCAGGAAAGCAGGGACCGTCTGTCACTACAGACAGCAAGAAGAGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000544591.1 |
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| CDS GCA 72 bp | TGCCTCTTCTTGCTGTCTGTAGTGACAGACGGTCCCTaGTTTCCTGCCTCTTACGAGAATCCCACTTGTGAA | + |
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Preference number: 6 (lower is better) Translates to: CLFLLSVVTDGP*FPASYENPTCE Trigger: TTCACAAGTGGGATTCTCGTAAGAGGCAGGAAAGCAGGGACCGTCTGTCACTACAGACAGCAAGAAGAGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000652990.1 |
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| CDS TCA 72 bp | AGCTTTATCTTGACCAGGTGCGAGACTGCCCCTTTGTaGTTCTCAATCCCACACAGGGTGTCCAAGTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: SFILTRCETAPL*FSIPHRVSKFP Trigger: AGGAAACTTGGACACCCTGTGTGGGATTGAGAATCACAAAGGGGCAGTCTCGCACCTGGTCAAGATAAAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000544591.1 ENST00000652990.1 |
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| CDS GCA 72 bp | AGTTCAGTTCAGCTTTATCTTGACCAGGTGCGAGACTaGCCCTTTGTGATTCTCAATCCCACACAGGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: SSVQLYLDQVRD*PFVILNPTQGV Trigger: GACACCCTGTGTGGGATTGAGAATCACAAAGGGGCAGTCTCGCACCTGGTCAAGATAAAGCTGAACTGAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000544591.1 ENST00000652990.1 |
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| CDS CAA 90 bp | TGTTCAAAGGTTCTCTTGTTAGTTAGCACCCACTACCACTTCATTTaGCACTCCGCTTTTCTGCCTTCCCCTTCCCAATGCCTGTTACTG | + |
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Preference number: 6 (lower is better) Translates to: CSKVLLLVSTHYHFI*HSAFLPSPSQCLLL Trigger: CAGTAACAGGCATTGGGAAGGGGAAGGCAGAAAAGCGGAGTGCAAAATGAAGTGGTAGTGGGTGCTAACTAACAAGAGAACCTTTGAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000544591.1 ENST00000652990.1 |
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| CDS TCA 72 bp | CCACTTGTGAATGAAGAGTTCAGTTCAGCTTTATCTTaGCCAGGTGCGAGACTGCCCCTTTGTGATTCTCAA | + |
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Preference number: 6 (lower is better) Translates to: PLVNEEFSSALS*PGARLPLCDSQ Trigger: TTGAGAATCACAAAGGGGCAGTCTCGCACCTGGTCAAGATAAAGCTGAACTGAACTCTTCATTCACAAGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000544591.1 ENST00000652990.1 |
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| CDS TCA 72 bp | TGCTTTCCTGCCTCTTACGAGAATCCCACTTGTGAATaGAGAGTTCAGTTCAGCTTTATCTTGACCAGGTGC | + |
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Preference number: 6 (lower is better) Translates to: CFPASYENPTCE*RVQFSFILTRC Trigger: GCACCTGGTCAAGATAAAGCTGAACTGAACTCTTCATTCACAAGTGGGATTCTCGTAAGAGGCAGGAAAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000544591.1 ENST00000652990.1 |
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| CDS CAA 72 bp | AATCTGTTTTCTTCCCTCATTAAGGTTCACCTCTTCTaGCTGTCTGTAGTGACAGACGGTCCCTGCTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: NLFSSLIKVHLF*LSVVTDGPCFP Trigger: AGGAAAGCAGGGACCGTCTGTCACTACAGACAGCAAGAAGAGGTGAACCTTAATGAGGGAAGAAAACAGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000544591.1 |
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| CDS GCA 72 bp | TCTGATTCAGTGATTCTGGCGGAGAGCCCAAGAATTTaGATTTTTAACAGTTCCCAGGTGATGTTTCAGTTG | + |
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Preference number: 6 (lower is better) Translates to: SDSVILAESPRI*IFNSSQVMFQL Trigger: CAACTGAAACATCACCTGGGAACTGTTAAAAATGCAAATTCTTGGGCTCTCCGCCAGAATCACTGAATCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000544591.1 |
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| CDS CAA 72 bp | GACCTTATTTCTGTCCCATCGTGTTCAAAGGTTCTCTaGTTAGTTAGCACCCACTACCACTTCATTTTGCAC | + |
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Preference number: 6 (lower is better) Translates to: DLISVPSCSKVL*LVSTHYHFILH Trigger: GTGCAAAATGAAGTGGTAGTGGGTGCTAACTAACAAGAGAACCTTTGAACACGATGGGACAGAAATAAGGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000544591.1 ENST00000652990.1 |
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| CDS CAA 90 bp | AAAATGCATGACCTTATTTCTGTCCCATCGTGTTCAAAGGTTCTCTaGTTAGTTAGCACCCACTACCACTTCATTTTGCACTCCGCTTTT | + |
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Preference number: 6 (lower is better) Translates to: KMHDLISVPSCSKVL*LVSTHYHFILHSAF Trigger: AAAAGCGGAGTGCAAAATGAAGTGGTAGTGGGTGCTAACTAACAAGAGAACCTTTGAACACGATGGGACAGAAATAAGGTCATGCATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000544591.1 ENST00000652990.1 |
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| CDS CAA 90 bp | CAGTTATTTCTCACTGAAAGTACTAATGATGTAGACCAATACTCTTaGGTCAATCTGAAAATTCCTCCCTTGGACTTGCTTTCTCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: QLFLTESTNDVDQYS*VNLKIPPLDLLSLA Trigger: TGCCAGAGAAAGCAAGTCCAAGGGAGGAATTTTCAGATTGACCAAAGAGTATTGGTCTACATCATTAGTACTTTCAGTGAGAAATAACTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000544591.1 |
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| CDS CAA 72 bp | CTCACTGAAAGTACTAATGATGTAGACCAATACTCTTaGGTCAATCTGAAAATTCCTCCCTTGGACTTGCTT | + |
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Preference number: 6 (lower is better) Translates to: LTESTNDVDQYS*VNLKIPPLDLL Trigger: AAGCAAGTCCAAGGGAGGAATTTTCAGATTGACCAAAGAGTATTGGTCTACATCATTAGTACTTTCAGTGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000544591.1 |
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| CDS TCA 72 bp | TCTTGGATCCCTGACTTTCGTATTTATTTTGGAGTATaGATAATAGGCCCTCAAAAATTTGTTGATGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: SWIPDFRIYFGV*IIGPQKFVDVW Trigger: CCAGACATCAACAAATTTTTGAGGGCCTATTATTCATACTCCAAAATAAATACGAAAGTCAGGGATCCAAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000652990.1 |
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