Pregenerated sensors for LINC02442 (Homo sapiens)
Ensembl gene IDs: ENSG00000256077Ensembl transcript IDs: ENST00000537732.1, ENST00000540761.5
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCTCTTTTGAGGTACACCATGCAGTTTGGAGGTCTGTTGCTTCCTTaGGGCACGGTAAGGAGTGGTTCCAATTTGGGGTGCTCACGGGAT | + |
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Preference number: 5 (lower is better) Translates to: ALLRYTMQFGGLLLP*GTVRSGSNLGCSRD Trigger: ATCCCGTGAGCACCCCAAATTGGAACCACTCCTTACCGTGCCTCAAGGAAGCAACAGACCTCCAAACTGCATGGTGTACCTCAAAAGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000537732.1 ENST00000540761.5 |
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| CDS CCA 90 bp | CATGCAGTTTGGAGGTCTGTTGCTTCCTTGAGGCACGGTAAGGAGTaGTTCCAATTTGGGGTGCTCACGGGATCCACAGATCTCTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: HAVWRSVASLRHGKE*FQFGVLTGSTDLSF Trigger: AAAGGAGAGATCTGTGGATCCCGTGAGCACCCCAAATTGGAACCACTCCTTACCGTGCCTCAAGGAAGCAACAGACCTCCAAACTGCATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000537732.1 ENST00000540761.5 |
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| CDS CCA 90 bp | ACCTTTTTGCTTGGGTCTTGCTCTTTTGAGGTACACCATGCAGTTTaGAGGTCTGTTGCTTCCTTGAGGCACGGTAAGGAGTGGTTCCAA | + |
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Preference number: 5 (lower is better) Translates to: TFLLGSCSFEVHHAV*RSVASLRHGKEWFQ Trigger: TTGGAACCACTCCTTACCGTGCCTCAAGGAAGCAACAGACCTCCAAACTGCATGGTGTACCTCAAAAGAGCAAGACCCAAGCAAAAAGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000537732.1 |
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| CDS CCA 72 bp | TGGAGGTCTGTTGCTTCCTTGAGGCACGGTAAGGAGTaGTTCCAATTTGGGGTGCTCACGGGATCCACAGAT | + |
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Preference number: 6 (lower is better) Translates to: WRSVASLRHGKE*FQFGVLTGSTD Trigger: ATCTGTGGATCCCGTGAGCACCCCAAATTGGAACCACTCCTTACCGTGCCTCAAGGAAGCAACAGACCTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000537732.1 ENST00000540761.5 |
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| CDS TCA 72 bp | AGGTACACCATGCAGTTTGGAGGTCTGTTGCTTCCTTaGGGCACGGTAAGGAGTGGTTCCAATTTGGGGTGC | + |
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Preference number: 6 (lower is better) Translates to: RYTMQFGGLLLP*GTVRSGSNLGC Trigger: GCACCCCAAATTGGAACCACTCCTTACCGTGCCTCAAGGAAGCAACAGACCTCCAAACTGCATGGTGTACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000537732.1 ENST00000540761.5 |
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| CDS CAA 72 bp | GAGGTACACCATGCAGTTTGGAGGTCTGTTGCTTCCTaGAGGCACGGTAAGGAGTGGTTCCAATTTGGGGTG | + |
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Preference number: 6 (lower is better) Translates to: EVHHAVWRSVAS*RHGKEWFQFGV Trigger: CACCCCAAATTGGAACCACTCCTTACCGTGCCTCAAGGAAGCAACAGACCTCCAAACTGCATGGTGTACCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000537732.1 ENST00000540761.5 |
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| CDS CAA 90 bp | TGCTCTTTTGAGGTACACCATGCAGTTTGGAGGTCTGTTGCTTCCTaGAGGCACGGTAAGGAGTGGTTCCAATTTGGGGTGCTCACGGGA | + |
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Preference number: 6 (lower is better) Translates to: CSFEVHHAVWRSVAS*RHGKEWFQFGVLTG Trigger: TCCCGTGAGCACCCCAAATTGGAACCACTCCTTACCGTGCCTCAAGGAAGCAACAGACCTCCAAACTGCATGGTGTACCTCAAAAGAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000537732.1 ENST00000540761.5 |
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| CDS CCA 72 bp | CTTGGGTCTTGCTCTTTTGAGGTACACCATGCAGTTTaGAGGTCTGTTGCTTCCTTGAGGCACGGTAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: LGSCSFEVHHAV*RSVASLRHGKE Trigger: CTCCTTACCGTGCCTCAAGGAAGCAACAGACCTCCAAACTGCATGGTGTACCTCAAAAGAGCAAGACCCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000537732.1 ENST00000540761.5 |
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| CDS GCA 72 bp | TCAGGAAATCAGGCAGCATTCTTTTTGCTTGGGTCTTaGTCTTTTGAGGTACACCATGCAGTTTGGAGGTCT | + |
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Preference number: 6 (lower is better) Translates to: SGNQAAFFLLGS*SFEVHHAVWRS Trigger: AGACCTCCAAACTGCATGGTGTACCTCAAAAGAGCAAGACCCAAGCAAAAAGAATGCTGCCTGATTTCCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000540761.5 |
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| CDS TCA 72 bp | CTGAATCCCGAAATGTGTCTGGTCCCAAAGTTTTGTTaGGGAATTGTGGACTTCTTTAACCTTTTTGCTTGG | + |
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Preference number: 6 (lower is better) Translates to: LNPEMCLVPKFC*GIVDFFNLFAW Trigger: CCAAGCAAAAAGGTTAAAGAAGTCCACAATTCCTCAACAAAACTTTGGGACCAGACACATTTCGGGATTCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000537732.1 |
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| CDS CCA 72 bp | AAATGTGTCTGGTCCCAAAGTTTTGTTGAGGAATTGTaGACTTCTTTAACCTTTTTGCTTGGGTCTTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: KCVWSQSFVEEL*TSLTFLLGSCS Trigger: AGAGCAAGACCCAAGCAAAAAGGTTAAAGAAGTCCACAATTCCTCAACAAAACTTTGGGACCAGACACATTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000537732.1 |
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