Pregenerated sensors for LINC02440 (Homo sapiens)
Ensembl gene IDs: ENSG00000255618Ensembl transcript IDs: ENST00000545276.1, ENST00000668907.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTTCCCCTGGAGTCGGGCTGCCCAGCCGCTGGACTCTTCTCTGACTaGCCCCAGCCAGACTCCTCTTGGCGTCCAGACATCTCTCCTCTT | + |
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Preference number: 5 (lower is better) Translates to: LPLESGCPAAGLFSD*PQPDSSWRPDISPL Trigger: AAGAGGAGAGATGTCTGGACGCCAAGAGGAGTCTGGCTGGGGCCAGTCAGAGAAGAGTCCAGCGGCTGGGCAGCCCGACTCCAGGGGAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000545276.1 ENST00000668907.1 |
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| CDS GCA 90 bp | CCCCTGGAGTCTTCAGAGGGAGCGTGGCCTTACACACATCCTGACTaGCAATTTCTAGCCTCTAGAGCTGTAATTGGAGCGTCCATGTGC | + |
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Preference number: 5 (lower is better) Translates to: PLESSEGAWPYTHPD*QFLASRAVIGASMC Trigger: GCACATGGACGCTCCAATTACAGCTCTAGAGGCTAGAAATTGGCAGTCAGGATGTGTGTAAGGCCACGCTCCCTCTGAAGACTCCAGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000545276.1 ENST00000668907.1 |
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| CDS CCA 90 bp | GAGGAGGCAAGGAAAGATCCTCCCCTGGAGTCTTCAGAGGGAGCGTaGCCTTACACACATCCTGACTGCCAATTTCTAGCCTCTAGAGCT | + |
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Preference number: 5 (lower is better) Translates to: EEARKDPPLESSEGA*PYTHPDCQFLASRA Trigger: AGCTCTAGAGGCTAGAAATTGGCAGTCAGGATGTGTGTAAGGCCACGCTCCCTCTGAAGACTCCAGGGGAGGATCTTTCCTTGCCTCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000545276.1 ENST00000668907.1 |
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| CDS GCA 90 bp | CCTCTTCTCTCTTTCTCTGCCACTTTGTTCCACCATCCATCTGCTTaGCTCCTTGTCTCCTCGCCTGCTGGTCTGTATTCTGGAGCTTGG | + |
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Preference number: 5 (lower is better) Translates to: PLLSFSATLFHHPSA*LLVSSPAGLYSGAW Trigger: CCAAGCTCCAGAATACAGACCAGCAGGCGAGGAGACAAGGAGGCAAGCAGATGGATGGTGGAACAAAGTGGCAGAGAAAGAGAGAAGAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000545276.1 ENST00000668907.1 |
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| CDS GCA 90 bp | AGACTCCTCTTGGCGTCCAGACATCTCTCCTCTTCTCTCTTTCTCTaGCACTTTGTTCCACCATCCATCTGCTTGCCTCCTTGTCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: RLLLASRHLSSSLFL*HFVPPSICLPPCLL Trigger: GAGGAGACAAGGAGGCAAGCAGATGGATGGTGGAACAAAGTGGCAGAGAAAGAGAGAAGAGGAGAGATGTCTGGACGCCAAGAGGAGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000545276.1 ENST00000668907.1 |
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| CDS CCA 72 bp | CGTGAAGGGGGATGGAGTGGGAAGGTGATCTTCCCCTaGAGTCGGGCTGCCCAGCCGCTGGACTCTTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: REGGWSGKVIFP*SRAAQPLDSSL Trigger: CAGAGAAGAGTCCAGCGGCTGGGCAGCCCGACTCCAGGGGAAGATCACCTTCCCACTCCATCCCCCTTCACG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000545276.1 ENST00000668907.1 |
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| CDS GCA 72 bp | GCAGAGATGAGAGTGATGTGTCCACAGGCCAAGGAATaGCAAGGATGCTGGCAGCCACCAGAAGCTGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: AEMRVMCPQAKE*QGCWQPPEAGG Trigger: TCCTCCAGCTTCTGGTGGCTGCCAGCATCCTTGGCATTCCTTGGCCTGTGGACACATCACTCTCATCTCTGC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000545276.1 ENST00000668907.1 |
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| CDS CAA 72 bp | CTGCCACTTTGTTCCACCATCCATCTGCTTGCCTCCTaGTCTCCTCGCCTGCTGGTCTGTATTCTGGAGCTT | + |
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Preference number: 6 (lower is better) Translates to: LPLCSTIHLLAS*SPRLLVCILEL Trigger: AAGCTCCAGAATACAGACCAGCAGGCGAGGAGACAAGGAGGCAAGCAGATGGATGGTGGAACAAAGTGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000545276.1 ENST00000668907.1 |
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| CDS CAA 90 bp | TCTCTTTCTCTGCCACTTTGTTCCACCATCCATCTGCTTGCCTCCTaGTCTCCTCGCCTGCTGGTCTGTATTCTGGAGCTTGGGGTTGTG | + |
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Preference number: 6 (lower is better) Translates to: SLSLPLCSTIHLLAS*SPRLLVCILELGVV Trigger: CACAACCCCAAGCTCCAGAATACAGACCAGCAGGCGAGGAGACAAGGAGGCAAGCAGATGGATGGTGGAACAAAGTGGCAGAGAAAGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000545276.1 ENST00000668907.1 |
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| CDS CAA 72 bp | CTCTTTCTCTGCCACTTTGTTCCACCATCCATCTGCTaGCCTCCTTGTCTCCTCGCCTGCTGGTCTGTATTC | + |
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Preference number: 6 (lower is better) Translates to: LFLCHFVPPSIC*PPCLLACWSVF Trigger: GAATACAGACCAGCAGGCGAGGAGACAAGGAGGCAAGCAGATGGATGGTGGAACAAAGTGGCAGAGAAAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000545276.1 ENST00000668907.1 |
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| CDS CAA 90 bp | TCCTCTTCTCTCTTTCTCTGCCACTTTGTTCCACCATCCATCTGCTaGCCTCCTTGTCTCCTCGCCTGCTGGTCTGTATTCTGGAGCTTG | + |
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Preference number: 6 (lower is better) Translates to: SSSLFLCHFVPPSIC*PPCLLACWSVFWSL Trigger: CAAGCTCCAGAATACAGACCAGCAGGCGAGGAGACAAGGAGGCAAGCAGATGGATGGTGGAACAAAGTGGCAGAGAAAGAGAGAAGAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000545276.1 ENST00000668907.1 |
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| CDS GCA 72 bp | TCTTCAGAGGGAGCGTGGCCTTACACACATCCTGACTaGCAATTTCTAGCCTCTAGAGCTGTAATTGGAGCG | + |
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Preference number: 6 (lower is better) Translates to: SSEGAWPYTHPD*QFLASRAVIGA Trigger: CGCTCCAATTACAGCTCTAGAGGCTAGAAATTGGCAGTCAGGATGTGTGTAAGGCCACGCTCCCTCTGAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000545276.1 ENST00000668907.1 |
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| CDS GCA 72 bp | TCTTTCTCTGCCACTTTGTTCCACCATCCATCTGCTTaGCTCCTTGTCTCCTCGCCTGCTGGTCTGTATTCT | + |
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Preference number: 6 (lower is better) Translates to: SFSATLFHHPSA*LLVSSPAGLYS Trigger: AGAATACAGACCAGCAGGCGAGGAGACAAGGAGGCAAGCAGATGGATGGTGGAACAAAGTGGCAGAGAAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000545276.1 ENST00000668907.1 |
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| CDS GCA 72 bp | TTGGCGTCCAGACATCTCTCCTCTTCTCTCTTTCTCTaGCACTTTGTTCCACCATCCATCTGCTTGCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: LASRHLSSSLFL*HFVPPSICLPP Trigger: AGGAGGCAAGCAGATGGATGGTGGAACAAAGTGGCAGAGAAAGAGAGAAGAGGAGAGATGTCTGGACGCCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000545276.1 ENST00000668907.1 |
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| CDS CAA 72 bp | CCAGACATCTCTCCTCTTCTCTCTTTCTCTGCCACTTaGTTCCACCATCCATCTGCTTGCCTCCTTGTCTCC | + |
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Preference number: 6 (lower is better) Translates to: PDISPLLSFSAT*FHHPSACLLVS Trigger: GGAGACAAGGAGGCAAGCAGATGGATGGTGGAACAAAGTGGCAGAGAAAGAGAGAAGAGGAGAGATGTCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000545276.1 ENST00000668907.1 |
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