Pregenerated sensors for LINC02439 (Homo sapiens)
Ensembl gene IDs: ENSG00000255814Ensembl transcript IDs: ENST00000538783.1, ENST00000664005.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TCTCTGTGTAGGAGCTCTCTTGGGTTTCATAGGAGCTTTTCTGGCTaGGTTCGAGAGCCCAGACTCATCTGTGCTAGTGGGAAACCTTTC | + |
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Preference number: 5 (lower is better) Translates to: SLCRSSLGFHRSFSG*VREPRLICASGKPF Trigger: GAAAGGTTTCCCACTAGCACAGATGAGTCTGGGCTCTCGAACTCAGCCAGAAAAGCTCCTATGAAACCCAAGAGAGCTCCTACACAGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000538783.1 |
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| CDS TCA 90 bp | AGACTCATCTGTGCTAGTGGGAAACCTTTCTGCTTCTGTTCCCTTTaGGAGACCTCACTTTATTCAAGTCTCACATTCGGCTCCCCTCTT | + |
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Preference number: 5 (lower is better) Translates to: RLICASGKPFCFCSL*ETSLYSSLTFGSPL Trigger: AAGAGGGGAGCCGAATGTGAGACTTGAATAAAGTGAGGTCTCTCAAAGGGAACAGAAGCAGAAAGGTTTCCCACTAGCACAGATGAGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000538783.1 |
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| CDS TCA 90 bp | CCGTGTTGTCTGAGGGATGAGGGACAGTTCTTTCTAATAGTGCCTTaGGCAACATGCAACAGCAGAAAGCACTCATATAAACTTCAACTT | + |
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Preference number: 5 (lower is better) Translates to: PCCLRDEGQFFLIVP*ATCNSRKHSYKLQL Trigger: AAGTTGAAGTTTATATGAGTGCTTTCTGCTGTTGCATGTTGCTCAAGGCACTATTAGAAAGAACTGTCCCTCATCCCTCAGACAACACGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664005.1 |
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| CDS TCA 72 bp | AGGAGCTCTCTTGGGTTTCATAGGAGCTTTTCTGGCTaGGTTCGAGAGCCCAGACTCATCTGTGCTAGTGGG | + |
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Preference number: 6 (lower is better) Translates to: RSSLGFHRSFSG*VREPRLICASG Trigger: CCCACTAGCACAGATGAGTCTGGGCTCTCGAACTCAGCCAGAAAAGCTCCTATGAAACCCAAGAGAGCTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000538783.1 |
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| CDS CAA 90 bp | CAAGAATTCAGGTACTTTGTTTCTTCCCAGGCTCCAGGATCTCCTTaGTGCAGCCATAGGATGGTTGTCAGAGTTCTTCCCACCGTGTTG | + |
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Preference number: 6 (lower is better) Translates to: QEFRYFVSSQAPGSP*CSHRMVVRVLPTVL Trigger: CAACACGGTGGGAAGAACTCTGACAACCATCCTATGGCTGCACAAAGGAGATCCTGGAGCCTGGGAAGAAACAAAGTACCTGAATTCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664005.1 |
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| CDS TCA 72 bp | GTTGTCAGAGTTCTTCCCACCGTGTTGTCTGAGGGATaGGGGACAGTTCTTTCTAATAGTGCCTTGAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: VVRVLPTVLSEG*GTVLSNSALSN Trigger: GTTGCTCAAGGCACTATTAGAAAGAACTGTCCCTCATCCCTCAGACAACACGGTGGGAAGAACTCTGACAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664005.1 |
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| CDS CAA 72 bp | CTCACTTTATTCAAGTCTCACATTCGGCTCCCCTCTTaGCAGAGCCCCAAATCCATGTCCCTTGTTGCCATA | + |
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Preference number: 6 (lower is better) Translates to: LTLFKSHIRLPS*QSPKSMSLVAI Trigger: TATGGCAACAAGGGACATGGATTTGGGGCTCTGCAAAGAGGGGAGCCGAATGTGAGACTTGAATAAAGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000538783.1 |
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| CDS CAA 72 bp | AAGTGCTTGCTTCTCCTTCTCTGTGTAGGAGCTCTCTaGGGTTTCATAGGAGCTTTTCTGGCTGAGTTCGAG | + |
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Preference number: 6 (lower is better) Translates to: KCLLLLLCVGAL*GFIGAFLAEFE Trigger: CTCGAACTCAGCCAGAAAAGCTCCTATGAAACCCAAGAGAGCTCCTACACAGAGAAGGAGAAGCAAGCACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000538783.1 |
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| CDS CAA 90 bp | TTGAGAGACCTCACTTTATTCAAGTCTCACATTCGGCTCCCCTCTTaGCAGAGCCCCAAATCCATGTCCCTTGTTGCCATAGTGACATTA | + |
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Preference number: 6 (lower is better) Translates to: LRDLTLFKSHIRLPS*QSPKSMSLVAIVTL Trigger: TAATGTCACTATGGCAACAAGGGACATGGATTTGGGGCTCTGCAAAGAGGGGAGCCGAATGTGAGACTTGAATAAAGTGAGGTCTCTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000538783.1 |
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| CDS CAA 72 bp | AGCAGCACAATGGATGTCACCAAGAATTCAGGTACTTaGTTTCTTCCCAGGCTCCAGGATCTCCTTTGTGCA | + |
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Preference number: 6 (lower is better) Translates to: SSTMDVTKNSGT*FLPRLQDLLCA Trigger: TGCACAAAGGAGATCCTGGAGCCTGGGAAGAAACAAAGTACCTGAATTCTTGGTGACATCCATTGTGCTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664005.1 |
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| CDS CAA 72 bp | AAGTGCTTGCTTCTCCTTCTCTGTGTAGGAGCTCTCTaGGGTTTCATAGGAGCTTTTCTGGCTGAGTTTTTA | + |
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Preference number: 6 (lower is better) Translates to: KCLLLLLCVGAL*GFIGAFLAEFL Trigger: TAAAAACTCAGCCAGAAAAGCTCCTATGAAACCCAAGAGAGCTCCTACACAGAGAAGGAGAAGCAAGCACTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000664005.1 |
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| CDS TCA 72 bp | CTGAGGGATGAGGGACAGTTCTTTCTAATAGTGCCTTaGGCAACATGCAACAGCAGAAAGCACTCATATAAA | + |
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Preference number: 6 (lower is better) Translates to: LRDEGQFFLIVP*ATCNSRKHSYK Trigger: TTTATATGAGTGCTTTCTGCTGTTGCATGTTGCTCAAGGCACTATTAGAAAGAACTGTCCCTCATCCCTCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664005.1 |
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