Pregenerated sensors for LINC02438 (Homo sapiens)
Ensembl gene IDs: ENSG00000248238Ensembl transcript IDs: ENST00000505347.1, ENST00000669321.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGTCACAAGCCCAGTGTAGGGTCTCTTCTTCTAGGACACATTGTGTaGAAATCACCGGAGGTTGGTGGCAGCTCTGCTCCACCTGTCTCA | + |
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Preference number: 5 (lower is better) Translates to: GHKPSVGSLLLGHIV*KSPEVGGSSAPPVS Trigger: TGAGACAGGTGGAGCAGAGCTGCCACCAACCTCCGGTGATTTCCACACAATGTGTCCTAGAAGAAGAGACCCTACACTGGGCTTGTGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000505347.1 |
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| CDS TCA 90 bp | GAGTCCAGACTGAAGATGCAGCCCGTATGTGGAATATGCCACTTCTaGGGCAGACAGGAAGAACCTGAGAGCTGCCAGAAACAAGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: ESRLKMQPVCGICHF*GRQEEPESCQKQAA Trigger: GGCTGCTTGTTTCTGGCAGCTCTCAGGTTCTTCCTGTCTGCCTCAGAAGTGGCATATTCCACATACGGGCTGCATCTTCAGTCTGGACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000505347.1 |
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| CDS TCA 90 bp | ATTCACTCTGGTGAGCCCACATTCTCTTTTCCACACAGCGGCCAGTaGCCCTCCTGTGAGCTGCCCATTCGACTGTTAGAATGTGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: IHSGEPTFSFPHSGQ*PSCELPIRLLECVS Trigger: GGAGACACATTCTAACAGTCGAATGGGCAGCTCACAGGAGGGTCACTGGCCGCTGTGTGGAAAAGAGAATGTGGGCTCACCAGAGTGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669321.1 |
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| CDS TCA 90 bp | GCCCGTATGTGGAATATGCCACTTCTGAGGCAGACAGGAAGAACCTaGGAGCTGCCAGAAACAAGCAGCCCTCTTAAAGCTTTCATTCGC | + |
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Preference number: 5 (lower is better) Translates to: ARMWNMPLLRQTGRT*ELPETSSPLKAFIR Trigger: GCGAATGAAAGCTTTAAGAGGGCTGCTTGTTTCTGGCAGCTCTCAGGTTCTTCCTGTCTGCCTCAGAAGTGGCATATTCCACATACGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000505347.1 |
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| CDS CCA 90 bp | GTCTCTTCTTCTAGGACACATTGTGTGGAAATCACCGGAGGTTGGTaGCAGCTCTGCTCCACCTGTCTCATCTTGAAGAGGATGAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: VSSSRTHCVEITGGW*QLCSTCLILKRMSP Trigger: TGGACTCATCCTCTTCAAGATGAGACAGGTGGAGCAGAGCTGCCACCAACCTCCGGTGATTTCCACACAATGTGTCCTAGAAGAAGAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000505347.1 |
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| CDS CCA 90 bp | AGGGTCTCTTCTTCTAGGACACATTGTGTGGAAATCACCGGAGGTTaGTGGCAGCTCTGCTCCACCTGTCTCATCTTGAAGAGGATGAGT | + |
|
Preference number: 5 (lower is better) Translates to: RVSSSRTHCVEITGG*WQLCSTCLILKRMS Trigger: ACTCATCCTCTTCAAGATGAGACAGGTGGAGCAGAGCTGCCACCAACCTCCGGTGATTTCCACACAATGTGTCCTAGAAGAAGAGACCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000505347.1 |
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| CDS CCA 90 bp | GAGTCACAAATCCTTGAGTCTTCTCCATTTCTGCCACCTGCTTGGTaGCCACCATCTTGGACAAGCTGGTTAACATCTATAAGAATTGAT | + |
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Preference number: 5 (lower is better) Translates to: ESQILESSPFLPPAW*PPSWTSWLTSIRID Trigger: ATCAATTCTTATAGATGTTAACCAGCTTGTCCAAGATGGTGGCCACCAAGCAGGTGGCAGAAATGGAGAAGACTCAAGGATTTGTGACTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669321.1 |
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| CDS CCA 90 bp | TTGGAGTCACAAATCCTTGAGTCTTCTCCATTTCTGCCACCTGCTTaGTGGCCACCATCTTGGACAAGCTGGTTAACATCTATAAGAATT | + |
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Preference number: 5 (lower is better) Translates to: LESQILESSPFLPPA*WPPSWTSWLTSIRI Trigger: AATTCTTATAGATGTTAACCAGCTTGTCCAAGATGGTGGCCACCAAGCAGGTGGCAGAAATGGAGAAGACTCAAGGATTTGTGACTCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669321.1 |
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| CDS GCA 90 bp | ATCAGCTATAGTTACTACCATCTTATTTCAAGGCACTATCACATTTaGCTGTATGATTTCAGTAGTCTCCCTACCAGTGTCCTTGCATTC | + |
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Preference number: 5 (lower is better) Translates to: ISYSYYHLISRHYHI*LYDFSSLPTSVLAF Trigger: GAATGCAAGGACACTGGTAGGGAGACTACTGAAATCATACAGGCAAATGTGATAGTGCCTTGAAATAAGATGGTAGTAACTATAGCTGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669321.1 |
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| CDS CCA 90 bp | AGGACACCTTCAATCATAATCAGCTTCACATATATAGTAAAGAGTTaGACAATTAAGAATCCTCATGGTAAGAGAGAACTTTTGGAGTCA | + |
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Preference number: 5 (lower is better) Translates to: RTPSIIISFTYIVKS*TIKNPHGKRELLES Trigger: TGACTCCAAAAGTTCTCTCTTACCATGAGGATTCTTAATTGTCCAACTCTTTACTATATATGTGAAGCTGATTATGATTGAAGGTGTCCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669321.1 |
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| CDS TCA 72 bp | GGTGAGCCCACATTCTCTTTTCCACACAGCGGCCAGTaGCCCTCCTGTGAGCTGCCCATTCGACTGTTAGAA | + |
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Preference number: 6 (lower is better) Translates to: GEPTFSFPHSGQ*PSCELPIRLLE Trigger: TTCTAACAGTCGAATGGGCAGCTCACAGGAGGGTCACTGGCCGCTGTGTGGAAAAGAGAATGTGGGCTCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669321.1 |
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| CDS CCA 72 bp | CCCAGTGTAGGGTCTCTTCTTCTAGGACACATTGTGTaGAAATCACCGGAGGTTGGTGGCAGCTCTGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: PSVGSLLLGHIV*KSPEVGGSSAP Trigger: TGGAGCAGAGCTGCCACCAACCTCCGGTGATTTCCACACAATGTGTCCTAGAAGAAGAGACCCTACACTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000505347.1 |
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| CDS TCA 72 bp | ATTCTCTTTTCCACACAGCGGCCAGTGACCCTCCTGTaGGCTGCCCATTCGACTGTTAGAATGTGTCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: ILFSTQRPVTLL*AAHSTVRMCLQ Trigger: CTGGAGACACATTCTAACAGTCGAATGGGCAGCTCACAGGAGGGTCACTGGCCGCTGTGTGGAAAAGAGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669321.1 |
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| CDS GCA 72 bp | CATTGTGTGGAAATCACCGGAGGTTGGTGGCAGCTCTaGTCCACCTGTCTCATCTTGAAGAGGATGAGTCCA | + |
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Preference number: 6 (lower is better) Translates to: HCVEITGGWWQL*STCLILKRMSP Trigger: TGGACTCATCCTCTTCAAGATGAGACAGGTGGAGCAGAGCTGCCACCAACCTCCGGTGATTTCCACACAATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000505347.1 |
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| CDS CCA 72 bp | TCTAGGACACATTGTGTGGAAATCACCGGAGGTTGGTaGCAGCTCTGCTCCACCTGTCTCATCTTGAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: SRTHCVEITGGW*QLCSTCLILKR Trigger: CCTCTTCAAGATGAGACAGGTGGAGCAGAGCTGCCACCAACCTCCGGTGATTTCCACACAATGTGTCCTAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000505347.1 |
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| CDS TCA 72 bp | CTGAAGATGCAGCCCGTATGTGGAATATGCCACTTCTaGGGCAGACAGGAAGAACCTGAGAGCTGCCAGAAA | + |
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Preference number: 6 (lower is better) Translates to: LKMQPVCGICHF*GRQEEPESCQK Trigger: TTTCTGGCAGCTCTCAGGTTCTTCCTGTCTGCCTCAGAAGTGGCATATTCCACATACGGGCTGCATCTTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000505347.1 |
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| CDS TCA 72 bp | TGGAATATGCCACTTCTGAGGCAGACAGGAAGAACCTaGGAGCTGCCAGAAACAAGCAGCCCTCTTAAAGCT | + |
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Preference number: 6 (lower is better) Translates to: WNMPLLRQTGRT*ELPETSSPLKA Trigger: AGCTTTAAGAGGGCTGCTTGTTTCTGGCAGCTCTCAGGTTCTTCCTGTCTGCCTCAGAAGTGGCATATTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000505347.1 |
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| CDS GCA 72 bp | TTTTGGAGTCACAAATCCTTGAGTCTTCTCCATTTCTaGCACCTGCTTGGTGGCCACCATCTTGGACAAGCT | + |
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Preference number: 6 (lower is better) Translates to: FWSHKSLSLLHF*HLLGGHHLGQA Trigger: AGCTTGTCCAAGATGGTGGCCACCAAGCAGGTGGCAGAAATGGAGAAGACTCAAGGATTTGTGACTCCAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669321.1 |
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| CDS CCA 72 bp | CAAATCCTTGAGTCTTCTCCATTTCTGCCACCTGCTTaGTGGCCACCATCTTGGACAAGCTGGTTAACATCT | + |
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Preference number: 6 (lower is better) Translates to: QILESSPFLPPA*WPPSWTSWLTS Trigger: AGATGTTAACCAGCTTGTCCAAGATGGTGGCCACCAAGCAGGTGGCAGAAATGGAGAAGACTCAAGGATTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669321.1 |
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| CDS CAA 72 bp | CATAGGATGGCATTATCATGGTGCCTTCAAACATTCTaGTCCGTGTTGCATTGTTCACAAAATTGGGTTGGC | + |
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Preference number: 6 (lower is better) Translates to: HRMALSWCLQTF*SVLHCSQNWVG Trigger: GCCAACCCAATTTTGTGAACAATGCAACACGGACAAGAATGTTTGAAGGCACCATGATAATGCCATCCTATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505347.1 |
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| CDS GCA 72 bp | AGTTACTACCATCTTATTTCAAGGCACTATCACATTTaGCTGTATGATTTCAGTAGTCTCCCTACCAGTGTC | + |
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Preference number: 6 (lower is better) Translates to: SYYHLISRHYHI*LYDFSSLPTSV Trigger: GACACTGGTAGGGAGACTACTGAAATCATACAGGCAAATGTGATAGTGCCTTGAAATAAGATGGTAGTAACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669321.1 |
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| CDS CAA 72 bp | ATCATGGTGCCTTCAAACATTCTTGTCCGTGTTGCATaGTTCACAAAATTGGGTTGGCTGACTCATAATAAT | + |
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Preference number: 6 (lower is better) Translates to: IMVPSNILVRVA*FTKLGWLTHNN Trigger: ATTATTATGAGTCAGCCAACCCAATTTTGTGAACAATGCAACACGGACAAGAATGTTTGAAGGCACCATGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000505347.1 |
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