Pregenerated sensors for LINC02424 (Homo sapiens)

Ensembl gene IDs: ENSG00000258220

Ensembl transcript IDs: ENST00000548512.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	ATAGTAGGTGCTGACATGATGGTCAGCCAAGATCTGCAGCTGCACTaGCTGGCAGGTGAGACTGTAGCCTGGTCATCTAATCTGTTACGA	+
Preference number: 5 (lower is better) Translates to: IVGADMMVSQDLQLH*LAGETVAWSSNLLR Trigger: TCGTAACAGATTAGATGACCAGGCTACAGTCTCACCTGCCAGGCAGTGCAGCTGCAGATCTTGGCTGACCATCATGTCAGCACCTACTAT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000548512.1
CDS CAA 72 bp	TGGGAGCTGACTCAAGGTTGCTTCCCTCCCTCTGAGTaGGTGATGGTGCTGTGCCAGATTCTCCTGAGAGCA	+
Preference number: 6 (lower is better) Translates to: WELTQGCFPPSE*VMVLCQILLRA Trigger: TGCTCTCAGGAGAATCTGGCACAGCACCATCACCAACTCAGAGGGAGGGAAGCAACCTTGAGTCAGCTCCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000548512.1
CDS GCA 72 bp	GCTGACATGATGGTCAGCCAAGATCTGCAGCTGCACTaGCTGGCAGGTGAGACTGTAGCCTGGTCATCTAAT	+
Preference number: 6 (lower is better) Translates to: ADMMVSQDLQLH*LAGETVAWSSN Trigger: ATTAGATGACCAGGCTACAGTCTCACCTGCCAGGCAGTGCAGCTGCAGATCTTGGCTGACCATCATGTCAGC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000548512.1
CDS GCA 72 bp	TTCCTTAGAGTTATATCTCCCTTGAACACTCATTACTaGCTGGGAGCTGACTCAAGGTTGCTTCCCTCCCTC	+
Preference number: 6 (lower is better) Translates to: FLRVISPLNTHY*LGADSRLLPSL Trigger: GAGGGAGGGAAGCAACCTTGAGTCAGCTCCCAGGCAGTAATGAGTGTTCAAGGGAGATATAACTCTAAGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000548512.1
CDS CAA 90 bp	TCTAATTCCTTGACCTCAATCCTTTTCCTTAGAGTTATATCTCCCTaGAACACTCATTACTGCCTGGGAGCTGACTCAAGGTTGCTTCCC	+
Preference number: 6 (lower is better) Translates to: SNSLTSILFLRVISP*NTHYCLGADSRLLP Trigger: GGGAAGCAACCTTGAGTCAGCTCCCAGGCAGTAATGAGTGTTCAAGGGAGATATAACTCTAAGGAAAAGGATTGAGGTCAAGGAATTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548512.1
CDS CAA 90 bp	TTCCCTTTCTTTCCATCCTTTATTTTCAGGCTCTTGGATTTGACATaGAAGTTAGGAACCCATCCAGTAACTGATCTTCTCATCTGTAGC	+
Preference number: 6 (lower is better) Translates to: FPFFPSFIFRLLDLT*KLGTHPVTDLLICS Trigger: GCTACAGATGAGAAGATCAGTTACTGGATGGGTTCCTAACTTCAATGTCAAATCCAAGAGCCTGAAAATAAAGGATGGAAAGAAAGGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548512.1
CDS CAA 90 bp	AATGACAAGGACTTGACAGTAAACATGTTTTATGATGTTCCTTTCTaGAGAGATGGTCTTCCTTGTATTCTCATTATGAGAATTACGGTC	+
Preference number: 6 (lower is better) Translates to: NDKDLTVNMFYDVPF*RDGLPCILIMRITV Trigger: GACCGTAATTCTCATAATGAGAATACAAGGAAGACCATCTCTCAAGAAAGGAACATCATAAAACATGTTTACTGTCAAGTCCTTGTCATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548512.1
CDS CAA 72 bp	GACTTGACAGTAAACATGTTTTATGATGTTCCTTTCTaGAGAGATGGTCTTCCTTGTATTCTCATTATGAGA	+
Preference number: 6 (lower is better) Translates to: DLTVNMFYDVPF*RDGLPCILIMR Trigger: TCTCATAATGAGAATACAAGGAAGACCATCTCTCAAGAAAGGAACATCATAAAACATGTTTACTGTCAAGTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000548512.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu