Pregenerated sensors for LINC02420 (Homo sapiens)
Ensembl gene IDs: ENSG00000256172Ensembl transcript IDs: ENST00000543387.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGCCTGAGCCTCAGAGGGGTAAGTGACTCCTCTCATTTATGCTGCTaGCGTCTGGTGAGGCTTAGTCTCGGCATTCAGGTGTGCAGATGG | + |
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Preference number: 5 (lower is better) Translates to: SLSLRGVSDSSHLCC*RLVRLSLGIQVCRW Trigger: CCATCTGCACACCTGAATGCCGAGACTAAGCCTCACCAGACGCCAGCAGCATAAATGAGAGGAGTCACTTACCCCTCTGAGGCTCAGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543387.1 |
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| CDS GCA 90 bp | AGAAGCCTGAGCCTCAGAGGGGTAAGTGACTCCTCTCATTTATGCTaGTGGCGTCTGGTGAGGCTTAGTCTCGGCATTCAGGTGTGCAGA | + |
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Preference number: 5 (lower is better) Translates to: RSLSLRGVSDSSHLC*WRLVRLSLGIQVCR Trigger: TCTGCACACCTGAATGCCGAGACTAAGCCTCACCAGACGCCAGCAGCATAAATGAGAGGAGTCACTTACCCCTCTGAGGCTCAGGCTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543387.1 |
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| CDS TCA 90 bp | TCAGCCAAGATAATTCCAAGTTCAGCAGCTTATTTGGAAGAGACATaGCAGCTGGGCTCTCAAGTCAGCCTCAGGTCAAAGCCGACATCT | + |
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Preference number: 5 (lower is better) Translates to: SAKIIPSSAAYLEET*QLGSQVSLRSKPTS Trigger: AGATGTCGGCTTTGACCTGAGGCTGACTTGAGAGCCCAGCTGTCATGTCTCTTCCAAATAAGCTGCTGAACTTGGAATTATCTTGGCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000543387.1 |
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| CDS TCA 72 bp | TTTCCAGTCGAGAAGCCTGAGCCTCAGAGGGGTAAGTaGCTCCTCTCATTTATGCTGCTGGCGTCTGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: FPVEKPEPQRGK*LLSFMLLASGE Trigger: CTCACCAGACGCCAGCAGCATAAATGAGAGGAGTCACTTACCCCTCTGAGGCTCAGGCTTCTCGACTGGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543387.1 |
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| CDS GCA 72 bp | AGCCTCAGAGGGGTAAGTGACTCCTCTCATTTATGCTaGTGGCGTCTGGTGAGGCTTAGTCTCGGCATTCAG | + |
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Preference number: 6 (lower is better) Translates to: SLRGVSDSSHLC*WRLVRLSLGIQ Trigger: CTGAATGCCGAGACTAAGCCTCACCAGACGCCAGCAGCATAAATGAGAGGAGTCACTTACCCCTCTGAGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543387.1 |
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| CDS CCA 72 bp | CTCAGAGGGGTAAGTGACTCCTCTCATTTATGCTGCTaGCGTCTGGTGAGGCTTAGTCTCGGCATTCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: LRGVSDSSHLCC*RLVRLSLGIQV Trigger: CACCTGAATGCCGAGACTAAGCCTCACCAGACGCCAGCAGCATAAATGAGAGGAGTCACTTACCCCTCTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543387.1 |
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| CDS CCA 72 bp | CTGGTGAGGCTTAGTCTCGGCATTCAGGTGTGCAGATaGTTATGTGTGTGGTGGGGAGTAGAAGTCTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: LVRLSLGIQVCR*LCVWWGVEVSS Trigger: AGAAGAGACTTCTACTCCCCACCACACACATAACCATCTGCACACCTGAATGCCGAGACTAAGCCTCACCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000543387.1 |
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| CDS TCA 72 bp | ATAATTCCAAGTTCAGCAGCTTATTTGGAAGAGACATaGCAGCTGGGCTCTCAAGTCAGCCTCAGGTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: IIPSSAAYLEET*QLGSQVSLRSK Trigger: CTTTGACCTGAGGCTGACTTGAGAGCCCAGCTGTCATGTCTCTTCCAAATAAGCTGCTGAACTTGGAATTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000543387.1 |
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| CDS CAA 72 bp | CTGACTGCTCAGTATTTTATGATGAGCCCAAGTCATTaGTCTTGCATCAGTTTTTCCTCCCTTGCTCTAATG | + |
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Preference number: 6 (lower is better) Translates to: LTAQYFMMSPSH*SCISFSSLALM Trigger: CATTAGAGCAAGGGAGGAAAAACTGATGCAAGACAAATGACTTGGGCTCATCATAAAATACTGAGCAGTCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543387.1 |
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| CDS CAA 90 bp | AATGTTCTGCTGACTGCTCAGTATTTTATGATGAGCCCAAGTCATTaGTCTTGCATCAGTTTTTCCTCCCTTGCTCTAATGCTTCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: NVLLTAQYFMMSPSH*SCISFSSLALMLLF Trigger: AAAGAGAAGCATTAGAGCAAGGGAGGAAAAACTGATGCAAGACAAATGACTTGGGCTCATCATAAAATACTGAGCAGTCAGCAGAACATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000543387.1 |
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