Pregenerated sensors for LINC02408 (Homo sapiens)
Ensembl gene IDs: ENSG00000203585Ensembl transcript IDs: ENST00000400306.2, ENST00000538573.1, ENST00000650195.1
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCCGGCTTCTCCTACACCGAGGCCAGCTTAGGCCTCCTGGGTCTGTaGTTCATGTGGTTGCCTATGTCCAGCTGGAAGACAGGCAGGCAC | + |
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Preference number: 5 (lower is better) Translates to: PGFSYTEASLGLLGL*FMWLPMSSWKTGRH Trigger: GTGCCTGCCTGTCTTCCAGCTGGACATAGGCAACCACATGAAGCACAGACCCAGGAGGCCTAAGCTGGCCTCGGTGTAGGAGAAGCCGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650195.1 |
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| CDS CCA 90 bp | TCCTACACCGAGGCCAGCTTAGGCCTCCTGGGTCTGTGCTTCATGTaGTTGCCTATGTCCAGCTGGAAGACAGGCAGGCACAACATTCAC | + |
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Preference number: 5 (lower is better) Translates to: SYTEASLGLLGLCFM*LPMSSWKTGRHNIH Trigger: GTGAATGTTGTGCCTGCCTGTCTTCCAGCTGGACATAGGCAACCACATGAAGCACAGACCCAGGAGGCCTAAGCTGGCCTCGGTGTAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650195.1 |
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| CDS CCA 90 bp | TCCATGGATGCCAGACACAGTGTTGAGGCTATATATGCAGTGATCTaGGGCAGTGCCTGCCTGGGCACTAGAAAGTCAGACCAGGTTCCC | + |
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Preference number: 5 (lower is better) Translates to: SMDARHSVEAIYAVI*GSACLGTRKSDQVP Trigger: GGGAACCTGGTCTGACTTTCTAGTGCCCAGGCAGGCACTGCCCCAGATCACTGCATATATAGCCTCAACACTGTGTCTGGCATCCATGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000538573.1 |
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| CDS TCA 90 bp | AATTGTCCATGGATGCCAGACACAGTGTTGAGGCTATATATGCAGTaGTCTGGGGCAGTGCCTGCCTGGGCACTAGAAAGTCAGACCAGG | + |
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Preference number: 5 (lower is better) Translates to: NCPWMPDTVLRLYMQ*SGAVPAWALESQTR Trigger: CCTGGTCTGACTTTCTAGTGCCCAGGCAGGCACTGCCCCAGATCACTGCATATATAGCCTCAACACTGTGTCTGGCATCCATGGACAATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000538573.1 |
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| CDS CCA 90 bp | TTAGGCCTCCTGGGTCTGTGCTTCATGTGGTTGCCTATGTCCAGCTaGAAGACAGGCAGGCACAACATTCACAACAGCACTGTTTGTAAT | + |
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Preference number: 5 (lower is better) Translates to: LGLLGLCFMWLPMSS*KTGRHNIHNSTVCN Trigger: ATTACAAACAGTGCTGTTGTGAATGTTGTGCCTGCCTGTCTTCCAGCTGGACATAGGCAACCACATGAAGCACAGACCCAGGAGGCCTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650195.1 |
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| CDS GCA 90 bp | GAAGTCCAATTCTGGCAAGGGTTCTCTCTTAGGCTTGCAATAAGCTaGCTTCATACTGTGTCTTCACATGGCAGAGAGAGAGAGCAAGCA | + |
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Preference number: 5 (lower is better) Translates to: EVQFWQGFSLRLAIS*LHTVSSHGREREQA Trigger: TGCTTGCTCTCTCTCTCTGCCATGTGAAGACACAGTATGAAGGCAGCTTATTGCAAGCCTAAGAGAGAACCCTTGCCAGAATTGGACTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400306.2 |
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| CDS TCA 90 bp | TTGCCATTTGGTGGTTGTGTGACTTCTAGCACACTCCTCAACCTCTaGGGGAGGGAGTCTAGTTTCTTCATCAGTAAAATAGTGGTCATC | + |
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Preference number: 5 (lower is better) Translates to: LPFGGCVTSSTLLNL*GRESSFFISKIVVI Trigger: GATGACCACTATTTTACTGATGAAGAAACTAGACTCCCTCCCTCAGAGGTTGAGGAGTGTGCTAGAAGTCACACAACCACCAAATGGCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000538573.1 |
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| CDS GCA 90 bp | CTAAAATTGTGTTCAGTTTGGATGTCATGGTTAGTCCAGGTCCTCTaGCTTCTTGATGAGGTCCCTGAGGTTTGTTTTGCCAGATCCTTC | + |
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Preference number: 5 (lower is better) Translates to: LKLCSVWMSWLVQVL*LLDEVPEVCFARSF Trigger: GAAGGATCTGGCAAAACAAACCTCAGGGACCTCATCAAGAAGGCAGAGGACCTGGACTAACCATGACATCCAAACTGAACACAATTTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400306.2 |
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| CDS CCA 90 bp | ATGAGTCACTCTGCGTTAGGAATCAATCCTGAATTCTTTGACAAGTaGTCACTTTCTTCTTCAAAAACATCCCTGTGCCCGGCTTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: MSHSALGINPEFFDK*SLSSSKTSLCPASP Trigger: AGGAGAAGCCGGGCACAGGGATGTTTTTGAAGAAGAAAGTGACCACTTGTCAAAGAATTCAGGATTGATTCCTAACGCAGAGTGACTCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000650195.1 |
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| CDS GCA 90 bp | TTCACAACAGCACTGTTTGTAATGGCCAAAATAATTGTGGCAGAATaGAAAGGAGAAGCAAGGTACCTCTTGCATGGCAGCAGGAAAAAG | + |
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Preference number: 5 (lower is better) Translates to: FTTALFVMAKIIVAE*KGEARYLLHGSRKK Trigger: CTTTTTCCTGCTGCCATGCAAGAGGTACCTTGCTTCTCCTTTGCATTCTGCCACAATTATTTTGGCCATTACAAACAGTGCTGTTGTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000650195.1 |
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| CDS CCA 90 bp | ATCCTGTCTCTTCTGTGGGAATTATCTCTAAAATTGTGTTCAGTTTaGATGTCATGGTTAGTCCAGGTCCTCTGCCTTCTTGATGAGGTC | + |
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Preference number: 5 (lower is better) Translates to: ILSLLWELSLKLCSV*MSWLVQVLCLLDEV Trigger: GACCTCATCAAGAAGGCAGAGGACCTGGACTAACCATGACATCCAAACTGAACACAATTTTAGAGATAATTCCCACAGAAGAGACAGGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400306.2 |
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| CDS GCA 90 bp | ATTGTTGTCAAAAGAATCTTCTCAGATCTATCAGAACTGCCTGCCTaGCAATTCAGAATAAAGGTAGTCACTGAATGGATTCTGTCTAAG | + |
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Preference number: 5 (lower is better) Translates to: IVVKRIFSDLSELPA*QFRIKVVTEWILSK Trigger: CTTAGACAGAATCCATTCAGTGACTACCTTTATTCTGAATTGGCAGGCAGGCAGTTCTGATAGATCTGAGAAGATTCTTTTGACAACAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400306.2 |
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| CDS CCA 90 bp | ACCTTAATTAATTCCCAAAGATCCCATCTCCAAATATCATCACATTaGAGCTTAGAGCTTCAACAGATAAATTTTGGGAGCACACAAGTC | + |
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Preference number: 5 (lower is better) Translates to: TLINSQRSHLQISSH*SLELQQINFGSTQV Trigger: GACTTGTGTGCTCCCAAAATTTATCTGTTGAAGCTCTAAGCTCCAATGTGATGATATTTGGAGATGGGATCTTTGGGAATTAATTAAGGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400306.2 |
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| CDS CCA 90 bp | TCAGAACTGCCTGCCTGCCAATTCAGAATAAAGGTAGTCACTGAATaGATTCTGTCTAAGATTTTCACGACCAAAGTCTTAATTATTTCA | + |
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Preference number: 5 (lower is better) Translates to: SELPACQFRIKVVTE*ILSKIFTTKVLIIS Trigger: TGAAATAATTAAGACTTTGGTCGTGAAAATCTTAGACAGAATCCATTCAGTGACTACCTTTATTCTGAATTGGCAGGCAGGCAGTTCTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400306.2 |
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| CDS CAA 72 bp | GCCAGCTTAGGCCTCCTGGGTCTGTGCTTCATGTGGTaGCCTATGTCCAGCTGGAAGACAGGCAGGCACAAC | + |
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Preference number: 6 (lower is better) Translates to: ASLGLLGLCFMW*PMSSWKTGRHN Trigger: GTTGTGCCTGCCTGTCTTCCAGCTGGACATAGGCAACCACATGAAGCACAGACCCAGGAGGCCTAAGCTGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650195.1 |
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| CDS CAA 90 bp | TACACCGAGGCCAGCTTAGGCCTCCTGGGTCTGTGCTTCATGTGGTaGCCTATGTCCAGCTGGAAGACAGGCAGGCACAACATTCACAAC | + |
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Preference number: 6 (lower is better) Translates to: YTEASLGLLGLCFMW*PMSSWKTGRHNIHN Trigger: GTTGTGAATGTTGTGCCTGCCTGTCTTCCAGCTGGACATAGGCAACCACATGAAGCACAGACCCAGGAGGCCTAAGCTGGCCTCGGTGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650195.1 |
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| CDS TCA 72 bp | TGGATGCCAGACACAGTGTTGAGGCTATATATGCAGTaGTCTGGGGCAGTGCCTGCCTGGGCACTAGAAAGT | + |
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Preference number: 6 (lower is better) Translates to: WMPDTVLRLYMQ*SGAVPAWALES Trigger: ACTTTCTAGTGCCCAGGCAGGCACTGCCCCAGATCACTGCATATATAGCCTCAACACTGTGTCTGGCATCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000538573.1 |
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| CDS CCA 72 bp | CTGGGTCTGTGCTTCATGTGGTTGCCTATGTCCAGCTaGAAGACAGGCAGGCACAACATTCACAACAGCACT | + |
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Preference number: 6 (lower is better) Translates to: LGLCFMWLPMSS*KTGRHNIHNST Trigger: AGTGCTGTTGTGAATGTTGTGCCTGCCTGTCTTCCAGCTGGACATAGGCAACCACATGAAGCACAGACCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650195.1 |
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| CDS CCA 72 bp | GCTTGCAATAAGCTGCCTTCATACTGTGTCTTCACATaGCAGAGAGAGAGAGCAAGCAGGCACTCTGGTGTG | + |
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Preference number: 6 (lower is better) Translates to: ACNKLPSYCVFT*QRERASRHSGV Trigger: CACACCAGAGTGCCTGCTTGCTCTCTCTCTCTGCCATGTGAAGACACAGTATGAAGGCAGCTTATTGCAAGC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400306.2 |
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| CDS GCA 72 bp | TGTTCAGTTTGGATGTCATGGTTAGTCCAGGTCCTCTaGCTTCTTGATGAGGTCCCTGAGGTTTGTTTTGCC | + |
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Preference number: 6 (lower is better) Translates to: CSVWMSWLVQVL*LLDEVPEVCFA Trigger: GGCAAAACAAACCTCAGGGACCTCATCAAGAAGGCAGAGGACCTGGACTAACCATGACATCCAAACTGAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400306.2 |
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| CDS GCA 72 bp | TTCTGGCAAGGGTTCTCTCTTAGGCTTGCAATAAGCTaGCTTCATACTGTGTCTTCACATGGCAGAGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: FWQGFSLRLAIS*LHTVSSHGRER Trigger: TCTCTCTCTGCCATGTGAAGACACAGTATGAAGGCAGCTTATTGCAAGCCTAAGAGAGAACCCTTGCCAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400306.2 |
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| CDS TCA 72 bp | GGTGGTTGTGTGACTTCTAGCACACTCCTCAACCTCTaGGGGAGGGAGTCTAGTTTCTTCATCAGTAAAATA | + |
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Preference number: 6 (lower is better) Translates to: GGCVTSSTLLNL*GRESSFFISKI Trigger: TATTTTACTGATGAAGAAACTAGACTCCCTCCCTCAGAGGTTGAGGAGTGTGCTAGAAGTCACACAACCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000538573.1 |
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| CDS TCA 72 bp | GATGCTTTCTTACAACCAGACTTGGAGGCTCTGTTATaGTGTGGAGAGTATAGCCTTTGGAGTCACCAGGTT | + |
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Preference number: 6 (lower is better) Translates to: DAFLQPDLEALL*CGEYSLWSHQV Trigger: AACCTGGTGACTCCAAAGGCTATACTCTCCACATCATAACAGAGCCTCCAAGTCTGGTTGTAAGAAAGCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000538573.1 |
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| CDS CCA 72 bp | ACTGGGTGGCTTAAACAACAGAAGTTTATGTTTTCATaGTTCTGGAGACCGGAAGTCCAATTCTGGCAAGGG | + |
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Preference number: 6 (lower is better) Translates to: TGWLKQQKFMFS*FWRPEVQFWQG Trigger: CCCTTGCCAGAATTGGACTTCCGGTCTCCAGAACCATGAAAACATAAACTTCTGTTGTTTAAGCCACCCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400306.2 |
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| CDS CCA 72 bp | GATGCCTGCTATCTGATGCTTTCTTACAACCAGACTTaGAGGCTCTGTTATGATGTGGAGAGTATAGCCTTT | + |
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Preference number: 6 (lower is better) Translates to: DACYLMLSYNQT*RLCYDVESIAF Trigger: AAAGGCTATACTCTCCACATCATAACAGAGCCTCCAAGTCTGGTTGTAAGAAAGCATCAGATAGCAGGCATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000538573.1 |
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| CDS CAA 90 bp | CATTTTCTAGAAATCCTGTCTCTTCTGTGGGAATTATCTCTAAAATaGTGTTCAGTTTGGATGTCATGGTTAGTCCAGGTCCTCTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: HFLEILSLLWELSLK*CSVWMSWLVQVLCL Trigger: AAGGCAGAGGACCTGGACTAACCATGACATCCAAACTGAACACAATTTTAGAGATAATTCCCACAGAAGAGACAGGATTTCTAGAAAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400306.2 |
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| CDS CCA 72 bp | CCTGCCTGCCAATTCAGAATAAAGGTAGTCACTGAATaGATTCTGTCTAAGATTTTCACGACCAAAGTCTTA | + |
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Preference number: 6 (lower is better) Translates to: PACQFRIKVVTE*ILSKIFTTKVL Trigger: TAAGACTTTGGTCGTGAAAATCTTAGACAGAATCCATTCAGTGACTACCTTTATTCTGAATTGGCAGGCAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400306.2 |
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| CDS CAA 90 bp | ATCCCAAAGTGGACATCTCATATTTGGGTGAAACAGCAAATCTCCTaGACAATATTAATGTCCCTGGCAATTCAAATATCTTCAAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: IPKWTSHIWVKQQIS*TILMSLAIQISSKE Trigger: TTCCTTTGAAGATATTTGAATTGCCAGGGACATTAATATTGTCAAGGAGATTTGCTGTTTCACCCAAATATGAGATGTCCACTTTGGGAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400306.2 |
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