Pregenerated sensors for LINC02406 (Homo sapiens)
Ensembl gene IDs: ENSG00000258144Ensembl transcript IDs: ENST00000553029.1, ENST00000659930.1, ENST00000662938.1, ENST00000668449.1
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGCCTGTCCCAGCACCGAGGGGCACGGACAAAACGGAGCGGGAAGTaGCCAGTTCTTGACGTCGGATCCGTGTTCGCGGCCGGCTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: SLSQHRGARTKRSGK*PVLDVGSVFAAGSG Trigger: CCCTGAGCCGGCCGCGAACACGGATCCGACGTCAAGAACTGGGCACTTCCCGCTCCGTTTTGTCCGTGCCCCTCGGTGCTGGGACAGGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000662938.1 |
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| CDS GCA 90 bp | CTGGTGATCCAGCACCGAGGGGCACGGACAAAACGGAGCGGGAAGTaGCCAGTTCTTGACGTCGGATCCGTGTTCGCGGCCGGCTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: LVIQHRGARTKRSGK*PVLDVGSVFAAGSG Trigger: CCCTGAGCCGGCCGCGAACACGGATCCGACGTCAAGAACTGGGCACTTCCCGCTCCGTTTTGTCCGTGCCCCTCGGTGCTGGATCACCAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659930.1 |
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| CDS CCA 90 bp | TTCAGGATGCAGGCTGTGTGGGAGCTGGGTGAGGCCTGTGGCTGCTaGCTTTCCTTCACTTCCCTGGTGATCCAGCACCGAGGGGCACGG | + |
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Preference number: 5 (lower is better) Translates to: FRMQAVWELGEACGC*LSFTSLVIQHRGAR Trigger: CCGTGCCCCTCGGTGCTGGATCACCAGGGAAGTGAAGGAAAGCCAGCAGCCACAGGCCTCACCCAGCTCCCACACAGCCTGCATCCTGAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659930.1 |
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| CDS GCA 90 bp | CCTTTCAGGATGCAGGCTGTGTGGGAGCTGGGTGAGGCCTGTGGCTaGTGGCTTTCCTTCACTTCCCTGGTGATCCAGCACCGAGGGGCA | + |
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Preference number: 5 (lower is better) Translates to: PFRMQAVWELGEACG*WLSFTSLVIQHRGA Trigger: TGCCCCTCGGTGCTGGATCACCAGGGAAGTGAAGGAAAGCCAGCAGCCACAGGCCTCACCCAGCTCCCACACAGCCTGCATCCTGAAAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659930.1 |
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| CDS TCA 90 bp | GGAGTGAGACCAGCCTTTCAGGATGCAGGCTGTGTGGGAGCTGGGTaGGGCCTGTGGCTGCTGGCTTTCCTTCACTTCCCTGGTGATCCA | + |
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Preference number: 5 (lower is better) Translates to: GVRPAFQDAGCVGAG*GLWLLAFLHFPGDP Trigger: TGGATCACCAGGGAAGTGAAGGAAAGCCAGCAGCCACAGGCCTCACCCAGCTCCCACACAGCCTGCATCCTGAAAGGCTGGTCTCACTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659930.1 |
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| CDS GCA 90 bp | GTGCTGTTGCAGGAGCACAGTAGGAGTGAGACCAGCCTTTCAGGATaGAGGCTGTGTGGGAGCTGGGTGAGGCCTGTGGCTGCTGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: VLLQEHSRSETSLSG*RLCGSWVRPVAAGF Trigger: AAAGCCAGCAGCCACAGGCCTCACCCAGCTCCCACACAGCCTGCATCCTGAAAGGCTGGTCTCACTCCTACTGTGCTCCTGCAACAGCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659930.1 |
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| CDS GCA 90 bp | GCAAGTTCTCAGCCCTGCTCACCAGTTGCCTGGAAATATACTTGGTaGTGTTGCAGGAGCACAGTAGGAGTGAGACCAGCCTTTCAGGAT | + |
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Preference number: 5 (lower is better) Translates to: ASSQPCSPVAWKYTW*CCRSTVGVRPAFQD Trigger: ATCCTGAAAGGCTGGTCTCACTCCTACTGTGCTCCTGCAACAGCACCAAGTATATTTCCAGGCAACTGGTGAGCAGGGCTGAGAACTTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659930.1 ENST00000668449.1 |
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| CDS GCA 90 bp | CCAGGAAAGCTGAGAGAATTCACAGAACTTTTGAAGGAGGTGGATTaGCACTGCAGGCTCTGTGGGACAACTGAGGAGCTGTGCTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: PGKLREFTELLKEVD*HCRLCGTTEELCFL Trigger: GAGAAAGCACAGCTCCTCAGTTGTCCCACAGAGCCTGCAGTGGCAATCCACCTCCTTCAAAAGTTCTGTGAATTCTCTCAGCTTTCCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000659930.1 ENST00000668449.1 |
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| CDS TCA 90 bp | GGGTGGCTTTATTATAAACATCTATTTATCACAATTCGGAAAACTTaGGGTCCAAGATCAAGCTGTCAGCATCTAGCCTGTCCCAGCACC | + |
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Preference number: 5 (lower is better) Translates to: GWLYYKHLFITIRKT*GPRSSCQHLACPST Trigger: GGTGCTGGGACAGGCTAGATGCTGACAGCTTGATCTTGGACCTCAAGTTTTCCGAATTGTGATAAATAGATGTTTATAATAAAGCCACCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662938.1 |
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| CDS TCA 90 bp | GGGTGGCTTTATTATAAACATCTATTTATCACAATTCGGAAAACTTaGGGTCCAAGATCAAGCTGTCAGCATCTAGCCTGTCCAGGAAAG | + |
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Preference number: 5 (lower is better) Translates to: GWLYYKHLFITIRKT*GPRSSCQHLACPGK Trigger: CTTTCCTGGACAGGCTAGATGCTGACAGCTTGATCTTGGACCTCAAGTTTTCCGAATTGTGATAAATAGATGTTTATAATAAAGCCACCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659930.1 |
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| CDS TCA 90 bp | GGGTGGCTTTATTATAAACATCTATTTATCACAATTCGGAAAACTTaGGGTCCAAGATCAAGCTGTCAGCATCTAGCCTGTCCAGTATTG | + |
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Preference number: 5 (lower is better) Translates to: GWLYYKHLFITIRKT*GPRSSCQHLACPVL Trigger: CAATACTGGACAGGCTAGATGCTGACAGCTTGATCTTGGACCTCAAGTTTTCCGAATTGTGATAAATAGATGTTTATAATAAAGCCACCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000668449.1 |
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| CDS CAA 90 bp | AGCACCGAGGGGCACGGACAAAACGGAGCGGGAAGTGCCCAGTTCTaGACGTCGGATCCGTGTTCGCGGCCGGCTCAGGGTCCGGCGCTG | + |
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Preference number: 6 (lower is better) Translates to: STEGHGQNGAGSAQF*TSDPCSRPAQGPAL Trigger: CAGCGCCGGACCCTGAGCCGGCCGCGAACACGGATCCGACGTCAAGAACTGGGCACTTCCCGCTCCGTTTTGTCCGTGCCCCTCGGTGCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000659930.1 ENST00000662938.1 |
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| CDS TCA 72 bp | GGCACGGACAAAACGGAGCGGGAAGTGCCCAGTTCTTaGCGTCGGATCCGTGTTCGCGGCCGGCTCAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: GTDKTEREVPSS*RRIRVRGRLRV Trigger: GACCCTGAGCCGGCCGCGAACACGGATCCGACGTCAAGAACTGGGCACTTCCCGCTCCGTTTTGTCCGTGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000659930.1 ENST00000662938.1 |
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| CDS GCA 72 bp | CAGCACCGAGGGGCACGGACAAAACGGAGCGGGAAGTaGCCAGTTCTTGACGTCGGATCCGTGTTCGCGGCC | + |
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Preference number: 6 (lower is better) Translates to: QHRGARTKRSGK*PVLDVGSVFAA Trigger: GGCCGCGAACACGGATCCGACGTCAAGAACTGGGCACTTCCCGCTCCGTTTTGTCCGTGCCCCTCGGTGCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000659930.1 ENST00000662938.1 |
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| CDS CAA 72 bp | GGGCACGGACAAAACGGAGCGGGAAGTGCCCAGTTCTaGACGTCGGATCCGTGTTCGCGGCCGGCTCAGGGT | + |
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Preference number: 6 (lower is better) Translates to: GHGQNGAGSAQF*TSDPCSRPAQG Trigger: ACCCTGAGCCGGCCGCGAACACGGATCCGACGTCAAGAACTGGGCACTTCCCGCTCCGTTTTGTCCGTGCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000659930.1 ENST00000662938.1 |
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| CDS GCA 72 bp | CAGGAGCACAGTAGGAGTGAGACCAGCCTTTCAGGATaGAGGCTGTGTGGGAGCTGGGTGAGGCCTGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: QEHSRSETSLSG*RLCGSWVRPVA Trigger: AGCCACAGGCCTCACCCAGCTCCCACACAGCCTGCATCCTGAAAGGCTGGTCTCACTCCTACTGTGCTCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659930.1 |
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| CDS CCA 72 bp | CTCTGTGGGACAACTGAGGAGCTGTGCTTTCTCAGCTaGGAGACTTGTGGTCTGGGGCAAGTTCTCAGCCCT | + |
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Preference number: 6 (lower is better) Translates to: LCGTTEELCFLS*ETCGLGQVLSP Trigger: AGGGCTGAGAACTTGCCCCAGACCACAAGTCTCCCAGCTGAGAAAGCACAGCTCCTCAGTTGTCCCACAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000659930.1 ENST00000668449.1 |
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| CDS GCA 72 bp | CAGCCCTGCTCACCAGTTGCCTGGAAATATACTTGGTaGTGTTGCAGGAGCACAGTAGGAGTGAGACCAGCC | + |
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Preference number: 6 (lower is better) Translates to: QPCSPVAWKYTW*CCRSTVGVRPA Trigger: GGCTGGTCTCACTCCTACTGTGCTCCTGCAACAGCACCAAGTATATTTCCAGGCAACTGGTGAGCAGGGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659930.1 ENST00000668449.1 |
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| CDS CCA 72 bp | TCTCAGCCCTGCTCACCAGTTGCCTGGAAATATACTTaGTGCTGTTGCAGGAGCACAGTAGGAGTGAGACCA | + |
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Preference number: 6 (lower is better) Translates to: SQPCSPVAWKYT*CCCRSTVGVRP Trigger: TGGTCTCACTCCTACTGTGCTCCTGCAACAGCACCAAGTATATTTCCAGGCAACTGGTGAGCAGGGCTGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659930.1 ENST00000668449.1 |
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| CDS CAA 72 bp | TTCTCAGCCCTGCTCACCAGTTGCCTGGAAATATACTaGGTGCTGTTGCAGGAGCACAGTAGGAGTGAGACC | + |
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Preference number: 6 (lower is better) Translates to: FSALLTSCLEIY*VLLQEHSRSET Trigger: GGTCTCACTCCTACTGTGCTCCTGCAACAGCACCAAGTATATTTCCAGGCAACTGGTGAGCAGGGCTGAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659930.1 ENST00000668449.1 |
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| CDS CAA 72 bp | GCCTGTCCAGGAAAGCTGAGAGAATTCACAGAACTTTaGAAGGAGGTGGATTGCCACTGCAGGCTCTGTGGG | + |
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Preference number: 6 (lower is better) Translates to: ACPGKLREFTEL*KEVDCHCRLCG Trigger: CCCACAGAGCCTGCAGTGGCAATCCACCTCCTTCAAAAGTTCTGTGAATTCTCTCAGCTTTCCTGGACAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659930.1 |
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| CDS GCA 72 bp | TGCTCACCAGTTGCCTGGAAATATACTTGGTGCTGTTaGAGGAGCACAGTAGGAGTGAGACCAGCCTTTCAG | + |
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Preference number: 6 (lower is better) Translates to: CSPVAWKYTWCC*RSTVGVRPAFQ Trigger: CTGAAAGGCTGGTCTCACTCCTACTGTGCTCCTGCAACAGCACCAAGTATATTTCCAGGCAACTGGTGAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659930.1 ENST00000668449.1 |
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| CDS GCA 72 bp | CTGAGAGAATTCACAGAACTTTTGAAGGAGGTGGATTaGCACTGCAGGCTCTGTGGGACAACTGAGGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: LREFTELLKEVD*HCRLCGTTEEL Trigger: CAGCTCCTCAGTTGTCCCACAGAGCCTGCAGTGGCAATCCACCTCCTTCAAAAGTTCTGTGAATTCTCTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000659930.1 ENST00000668449.1 |
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| CDS CAA 72 bp | CTGCTCACCAGTTGCCTGGAAATATACTTGGTGCTGTaGCAGGAGCACAGTAGGAGTGAGACCAGCCTTTCA | + |
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Preference number: 6 (lower is better) Translates to: LLTSCLEIYLVL*QEHSRSETSLS Trigger: TGAAAGGCTGGTCTCACTCCTACTGTGCTCCTGCAACAGCACCAAGTATATTTCCAGGCAACTGGTGAGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000659930.1 ENST00000668449.1 |
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| CDS CAA 72 bp | CCAAGATCAAGCTGTCAGCATCTAGCCTGTCCAGTATaGGATGCCGTTGTCTCTCTACCAAGTCCCATTAGT | + |
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Preference number: 6 (lower is better) Translates to: PRSSCQHLACPV*DAVVSLPSPIS Trigger: ACTAATGGGACTTGGTAGAGAGACAACGGCATCCAATACTGGACAGGCTAGATGCTGACAGCTTGATCTTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668449.1 |
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| CDS TCA 72 bp | TATTATAAACATCTATTTATCACAATTCGGAAAACTTaGGGTCCAAGATCAAGCTGTCAGCATCTAGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: YYKHLFITIRKT*GPRSSCQHLAC Trigger: ACAGGCTAGATGCTGACAGCTTGATCTTGGACCTCAAGTTTTCCGAATTGTGATAAATAGATGTTTATAATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000553029.1 ENST00000659930.1 ENST00000662938.1 ENST00000668449.1 |
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