Pregenerated sensors for LINC02400 (Homo sapiens)
Ensembl gene IDs: ENSG00000257784Ensembl transcript IDs: ENST00000548210.2, ENST00000552712.2, ENST00000653328.1, ENST00000657863.1, ENST00000659353.1, ENST00000667995.1, ENST00000671469.1
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGAATCCTAGAGGTAGAGCTCCTGGAGTCTTGGTTTTCCCAGGCCTaGAGTTGGCAGCAGAGTCCCAGCCTTGGCAGCAGAGATTTTCTA | + |
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Preference number: 5 (lower is better) Translates to: RILEVELLESWFSQA*SWQQSPSLGSRDFL Trigger: TAGAAAATCTCTGCTGCCAAGGCTGGGACTCTGCTGCCAACTTCAGGCCTGGGAAAACCAAGACTCCAGGAGCTCTACCTCTAGGATTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENST00000548210.2 ENST00000552712.2 ENST00000653328.1 ENST00000657863.1 ENST00000659353.1 ENST00000667995.1 ENST00000671469.1 |
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| CDS GCA 90 bp | CTTTCTGCCCAGTGGGCACTCTTGCCTCTTCTGCAAGAACCATGGTaGAATACTGCTGCTTCTGCAGAGAGTAATTCCTCTTTGCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: LSAQWALLPLLQEPW*NTAASAESNSSLQV Trigger: CACCTGCAAAGAGGAATTACTCTCTGCAGAAGCAGCAGTATTGCACCATGGTTCTTGCAGAAGAGGCAAGAGTGCCCACTGGGCAGAAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671469.1 |
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| CDS GCA 90 bp | TCCAACTGGCACCACTTTCTGCCCAGTGGGCACTCTTGCCTCTTCTaGAAGAACCATGGTGCAATACTGCTGCTTCTGCAGAGAGTAATT | + |
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Preference number: 5 (lower is better) Translates to: SNWHHFLPSGHSCLF*KNHGAILLLLQRVI Trigger: AATTACTCTCTGCAGAAGCAGCAGTATTGCACCATGGTTCTTGCAGAAGAGGCAAGAGTGCCCACTGGGCAGAAAGTGGTGCCAGTTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671469.1 |
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| CDS CCA 90 bp | GGCAGTTCTTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTTaGCTGGTTTGTTACCCTTTCTTGCTCAGGGCCTCACACTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: GSSFSSCTQEKPPIC*LVCYPFLLRASHCS Trigger: GGAACAGTGTGAGGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAAGAACTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659353.1 |
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| CDS GCA 90 bp | GACTTGCATTTTCCTGGCTTCTCTTATGTTTTCAGACCTCTGTTCTaGAGCTTTCCTGGCAGTTTGTTCCTCCTGCCTGGAGTGAAAGCT | + |
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Preference number: 5 (lower is better) Translates to: DLHFPGFSYVFRPLF*SFPGSLFLLPGVKA Trigger: AGCTTTCACTCCAGGCAGGAGGAACAAACTGCCAGGAAAGCTGCAGAACAGAGGTCTGAAAACATAAGAGAAGCCAGGAAAATGCAAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000667995.1 |
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| CDS CCA 90 bp | GTTCTTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTTGGCTaGTTTGTTACCCTTTCTTGCTCAGGGCCTCACACTGTTCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: VLSHHALRKNLPFVG*FVTLSCSGPHTVPP Trigger: AGGAGGAACAGTGTGAGGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAAGAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659353.1 |
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| CDS GCA 90 bp | ACCAATGTTCTTAGTCCCAGTAACCCAGTGATTTCCAGTAGCACCTaGCTTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTTGGC | + |
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Preference number: 5 (lower is better) Translates to: TNVLSPSNPVISSST*LSHHALRKNLPFVG Trigger: GCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAAGGCAGGTGCTACTGGAAATCACTGGGTTACTGGGACTAAGAACATTGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000653328.1 ENST00000657863.1 |
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| CDS CCA 90 bp | CACCTGCCTTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTTaGCTGGTTTGTTACCCTTTCTTGCTCAGGGCTACAGAATGTGTT | + |
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Preference number: 5 (lower is better) Translates to: HLPFSSCTQEKPPIC*LVCYPFLLRATECV Trigger: AACACATTCTGTAGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAAGGCAGGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653328.1 |
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| CDS CCA 90 bp | TGCCTTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTTGGCTaGTTTGTTACCCTTTCTTGCTCAGGGCATACTCTGTATTCACCC | + |
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Preference number: 5 (lower is better) Translates to: CLSHHALRKNLPFVG*FVTLSCSGHTLYSP Trigger: GGGTGAATACAGAGTATGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAAGGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657863.1 |
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| CDS CCA 90 bp | CACCTGCCTTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTTaGCTGGTTTGTTACCCTTTCTTGCTCAGGGCATACTCTGTATTC | + |
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Preference number: 5 (lower is better) Translates to: HLPFSSCTQEKPPIC*LVCYPFLLRAYSVF Trigger: GAATACAGAGTATGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAAGGCAGGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657863.1 |
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| CDS TCA 90 bp | CCTTGCTGTTCCTTTAGATTCTTCCTTTCCTCCCATCCGGATTTGTaGAAAATCACCCACCCAACATGCTCACCAATGTTCTTAGTCCCA | + |
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Preference number: 5 (lower is better) Translates to: PCCSFRFFLSSHPDL*KITHPTCSPMFLVP Trigger: TGGGACTAAGAACATTGGTGAGCATGTTGGGTGGGTGATTTTTCACAAATCCGGATGGGAGGAAAGGAAGAATCTAAAGGAACAGCAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000653328.1 ENST00000657863.1 |
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| CDS CCA 90 bp | TGCCTTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTTGGCTaGTTTGTTACCCTTTCTTGCTCAGGGCTACAGAATGTGTTAGAG | + |
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Preference number: 5 (lower is better) Translates to: CLSHHALRKNLPFVG*FVTLSCSGLQNVLE Trigger: CTCTAACACATTCTGTAGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAAGGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653328.1 |
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| CDS GCA 90 bp | GACTTGCATTTTCCTGGCTTCTCTTATGTTTTCAGACCTCTGTTCTaGAGCTTTCCTGGCAGTTCTTTCTCATCATGCACTCAGGAAAAA | + |
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Preference number: 5 (lower is better) Translates to: DLHFPGFSYVFRPLF*SFPGSSFSSCTQEK Trigger: TTTTTCCTGAGTGCATGATGAGAAAGAACTGCCAGGAAAGCTGCAGAACAGAGGTCTGAAAACATAAGAGAAGCCAGGAAAATGCAAGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000548210.2 ENST00000659353.1 |
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| CDS CCA 90 bp | TCCTGGCTTCTCTTATGTTTTCAGACCTCTGTTCTGCAGCTTTCCTaGCAGTTCTGGAGCCTTGTCACATATAAAATGACTCAATCTTTG | + |
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Preference number: 5 (lower is better) Translates to: SWLLLCFQTSVLQLS*QFWSLVTYKMTQSL Trigger: CAAAGATTGAGTCATTTTATATGTGACAAGGCTCCAGAACTGCCAGGAAAGCTGCAGAACAGAGGTCTGAAAACATAAGAGAAGCCAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000653328.1 ENST00000657863.1 |
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| CDS GCA 72 bp | CACCACTTTCTGCCCAGTGGGCACTCTTGCCTCTTCTaGAAGAACCATGGTGCAATACTGCTGCTTCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: HHFLPSGHSCLF*KNHGAILLLLQ Trigger: CTGCAGAAGCAGCAGTATTGCACCATGGTTCTTGCAGAAGAGGCAAGAGTGCCCACTGGGCAGAAAGTGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671469.1 |
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| CDS GCA 72 bp | TCCAACTGGCACCACTTTCTGCCCAGTGGGCACTCTTaGCTCTTCTGCAAGAACCATGGTGCAATACTGCTG | + |
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Preference number: 6 (lower is better) Translates to: SNWHHFLPSGHS*LFCKNHGAILL Trigger: CAGCAGTATTGCACCATGGTTCTTGCAGAAGAGGCAAGAGTGCCCACTGGGCAGAAAGTGGTGCCAGTTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671469.1 |
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| CDS GCA 72 bp | CAGTGGGCACTCTTGCCTCTTCTGCAAGAACCATGGTaGAATACTGCTGCTTCTGCAGAGAGTAATTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: QWALLPLLQEPW*NTAASAESNSS Trigger: AGAGGAATTACTCTCTGCAGAAGCAGCAGTATTGCACCATGGTTCTTGCAGAAGAGGCAAGAGTGCCCACTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671469.1 |
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| CDS CAA 90 bp | TTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTTGGCTGGTTaGTTACCCTTTCTTGCTCAGGGACTGTTCCTCCTGCCTGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: FLIMHSGKTSHLLAG*LPFLAQGLFLLPGV Trigger: CACTCCAGGCAGGAGGAACAGTCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000548210.2 |
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| CDS CAA 90 bp | TTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTTGGCTGGTTaGTTACCCTTTCTTGCTCAGGGCCTCACACTGTTCCTCCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: FLIMHSGKTSHLLAG*LPFLAQGLTLFLLP Trigger: AGGCAGGAGGAACAGTGTGAGGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659353.1 |
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| CDS CAA 90 bp | TCCTGGCAGTTCTTTCTCATCATGCACTCAGGAAAAACCTCCCATTaGTTGGCTGGTTTGTTACCCTTTCTTGCTCAGGGCCTCACACTG | + |
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Preference number: 6 (lower is better) Translates to: SWQFFLIMHSGKTSH*LAGLLPFLAQGLTL Trigger: CAGTGTGAGGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAAGAACTGCCAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659353.1 |
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| CDS GCA 72 bp | CTTAGTCCCAGTAACCCAGTGATTTCCAGTAGCACCTaGCTTTCTCATCATGCACTCAGGAAAAACCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: LSPSNPVISSST*LSHHALRKNLP Trigger: TGGGAGGTTTTTCCTGAGTGCATGATGAGAAAGGCAGGTGCTACTGGAAATCACTGGGTTACTGGGACTAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000653328.1 ENST00000657863.1 |
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| CDS GCA 72 bp | TTTCCTGGCTTCTCTTATGTTTTCAGACCTCTGTTCTaGAGCTTTCCTGGCAGTTTGTTCCTCCTGCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: FPGFSYVFRPLF*SFPGSLFLLPG Trigger: TCCAGGCAGGAGGAACAAACTGCCAGGAAAGCTGCAGAACAGAGGTCTGAAAACATAAGAGAAGCCAGGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000667995.1 |
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| CDS CAA 72 bp | GCCTTTCTCATCATGCACTCAGGAAAAACCTCCCATTaGTTGGCTGGTTTGTTACCCTTTCTTGCTCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: AFLIMHSGKTSH*LAGLLPFLAQG Trigger: GCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAAGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000653328.1 ENST00000657863.1 |
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| CDS CAA 72 bp | ATGCACTCAGGAAAAACCTCCCATTTGTTGGCTGGTTaGTTACCCTTTCTTGCTCAGGGCCTCACACTGTTC | + |
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Preference number: 6 (lower is better) Translates to: MHSGKTSHLLAG*LPFLAQGLTLF Trigger: GAACAGTGTGAGGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659353.1 |
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| CDS CAA 90 bp | TGGCAGTTCTTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTaGGCTGGTTTGTTACCCTTTCTTGCTCAGGGACTGTTCCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: WQFFLIMHSGKTSHL*AGLLPFLAQGLFLL Trigger: CAGGAGGAACAGTCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAAGAACTGCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000548210.2 |
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| CDS CAA 90 bp | TCCTGGCAGTTCTTTCTCATCATGCACTCAGGAAAAACCTCCCATTaGTTGGCTGGTTTGTTACCCTTTCTTGCTCAGGGACTGTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: SWQFFLIMHSGKTSH*LAGLLPFLAQGLFL Trigger: GAGGAACAGTCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAAGAACTGCCAGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000548210.2 |
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| CDS CAA 90 bp | GCACCTGCCTTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTaGGCTGGTTTGTTACCCTTTCTTGCTCAGGGCTACAGAATGTGT | + |
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Preference number: 6 (lower is better) Translates to: APAFLIMHSGKTSHL*AGLLPFLAQGYRMC Trigger: ACACATTCTGTAGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAAGGCAGGTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653328.1 |
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| CDS CAA 90 bp | TGGCAGTTCTTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTaGGCTGGTTTGTTACCCTTTCTTGCTCAGGGCCTCACACTGTTC | + |
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Preference number: 6 (lower is better) Translates to: WQFFLIMHSGKTSHL*AGLLPFLAQGLTLF Trigger: GAACAGTGTGAGGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAAGAACTGCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659353.1 |
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| CDS CAA 90 bp | GCACCTGCCTTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTaGGCTGGTTTGTTACCCTTTCTTGCTCAGGGCATACTCTGTATT | + |
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Preference number: 6 (lower is better) Translates to: APAFLIMHSGKTSHL*AGLLPFLAQGILCI Trigger: AATACAGAGTATGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAAGGCAGGTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657863.1 |
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| CDS GCA 72 bp | CATCTGTGGAACTCTTGTTTTAAGCTCTCAATCAAATaGCGTCTCACCTGGGGAGTCATCTGTACTTCCCAC | + |
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Preference number: 6 (lower is better) Translates to: HLWNSCFKLSIK*RLTWGVICTSH Trigger: GTGGGAAGTACAGATGACTCCCCAGGTGAGACGGCATTTGATTGAGAGCTTAAAACAAGAGTTCCACAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000552712.2 ENST00000667995.1 ENST00000671469.1 |
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| CDS GCA 72 bp | TTTCCTGGCTTCTCTTATGTTTTCAGACCTCTGTTCTaGAGCTTTCCTGGCAGTTCTGGAGCCTTGTCACAT | + |
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Preference number: 6 (lower is better) Translates to: FPGFSYVFRPLF*SFPGSSGALSH Trigger: ATGTGACAAGGCTCCAGAACTGCCAGGAAAGCTGCAGAACAGAGGTCTGAAAACATAAGAGAAGCCAGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000653328.1 ENST00000657863.1 |
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| CDS CAA 72 bp | TTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTaGGCTGGTTTGTTACCCTTTCTTGCTCAGGGCCTC | + |
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Preference number: 6 (lower is better) Translates to: FLIMHSGKTSHL*AGLLPFLAQGL Trigger: GAGGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659353.1 |
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| CDS CAA 90 bp | TTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTTGGCTGGTTaGTTACCCTTTCTTGCTCAGGGCATACTCTGTATTCACCCTCAC | + |
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Preference number: 6 (lower is better) Translates to: FLIMHSGKTSHLLAG*LPFLAQGILCIHPH Trigger: GTGAGGGTGAATACAGAGTATGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657863.1 |
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| CDS CAA 90 bp | TTCTCTTATGTTTTCAGACCTCTGTTCTGCAGCTTTCCTGGCAGTTaGTTCCTCCTGCCTGGAGTGAAAGCTTCTTTCTTCTCCTCATCT | + |
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Preference number: 6 (lower is better) Translates to: FSYVFRPLFCSFPGS*FLLPGVKASFFSSS Trigger: AGATGAGGAGAAGAAAGAAGCTTTCACTCCAGGCAGGAGGAACAAACTGCCAGGAAAGCTGCAGAACAGAGGTCTGAAAACATAAGAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000667995.1 |
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| CDS CAA 72 bp | TTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTaGGCTGGTTTGTTACCCTTTCTTGCTCAGGGACTG | + |
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Preference number: 6 (lower is better) Translates to: FLIMHSGKTSHL*AGLLPFLAQGL Trigger: CAGTCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000548210.2 |
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| CDS CAA 72 bp | TTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTaGGCTGGTTTGTTACCCTTTCTTGCTCAGGGCTAC | + |
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Preference number: 6 (lower is better) Translates to: FLIMHSGKTSHL*AGLLPFLAQGY Trigger: GTAGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653328.1 |
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| CDS TCA 72 bp | TCCTTTAGATTCTTCCTTTCCTCCCATCCGGATTTGTaGAAAATCACCCACCCAACATGCTCACCAATGTTC | + |
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Preference number: 6 (lower is better) Translates to: SFRFFLSSHPDL*KITHPTCSPMF Trigger: GAACATTGGTGAGCATGTTGGGTGGGTGATTTTTCACAAATCCGGATGGGAGGAAAGGAAGAATCTAAAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000653328.1 ENST00000657863.1 |
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| CDS CAA 72 bp | ATGCACTCAGGAAAAACCTCCCATTTGTTGGCTGGTTaGTTACCCTTTCTTGCTCAGGGCATACTCTGTATT | + |
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Preference number: 6 (lower is better) Translates to: MHSGKTSHLLAG*LPFLAQGILCI Trigger: AATACAGAGTATGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657863.1 |
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| CDS CAA 72 bp | TTTCTCATCATGCACTCAGGAAAAACCTCCCATTTGTaGGCTGGTTTGTTACCCTTTCTTGCTCAGGGCATA | + |
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Preference number: 6 (lower is better) Translates to: FLIMHSGKTSHL*AGLLPFLAQGI Trigger: TATGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGTGCATGATGAGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657863.1 |
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| CDS CAA 90 bp | ACTCAGGAAAAACCTCCCATTTGTTGGCTGGTTTGTTACCCTTTCTaGCTCAGGGCTACAGAATGTGTTAGAGGAAAATCATGTAACAGT | + |
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Preference number: 6 (lower is better) Translates to: TQEKPPICWLVCYPF*LRATECVRGKSCNS Trigger: ACTGTTACATGATTTTCCTCTAACACATTCTGTAGCCCTGAGCAAGAAAGGGTAACAAACCAGCCAACAAATGGGAGGTTTTTCCTGAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000653328.1 |
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| CDS CAA 72 bp | TTAGGGTTTCATTCAGGAATCAGTGTCCTTCATGATTaGCATCTAACCTACTTGTCTAGTCTGATTTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: LGFHSGISVLHD*HLTYLSSLISP Trigger: TGGAGAAATCAGACTAGACAAGTAGGTTAGATGCAAATCATGAAGGACACTGATTCCTGAATGAAACCCTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653328.1 |
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