Pregenerated sensors for LINC02394 (Homo sapiens)
Ensembl gene IDs: ENSG00000258332Ensembl transcript IDs: ENST00000549140.2, ENST00000647598.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS TCA 90 bp | GGGCCAGTCACCCCAGCCAACACTGTAACACTCTTCTTAGCCTGTTaGCTTAAAGGTAGGAGGAGCCCAAAGTGTCCAGATGGCAATCTT | + |
Preference number: 5 (lower is better) Translates to: GPVTPANTVTLFLAC*LKGRRSPKCPDGNL Trigger: AAGATTGCCATCTGGACACTTTGGGCTCCTCCTACCTTTAAGTCAACAGGCTAAGAAGAGTGTTACAGTGTTGGCTGGGGTGACTGGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549140.2 |
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CDS CCA 90 bp | GTGCCGCTTCCACTTCCACCCCTCGATTACTGGACCTGTAAATCCTaGCTATGGGAGAAACAGTATCATGTATTGGAGGCTGATTCAGAG | + |
Preference number: 5 (lower is better) Translates to: VPLPLPPLDYWTCKS*LWEKQYHVLEADSE Trigger: CTCTGAATCAGCCTCCAATACATGATACTGTTTCTCCCATAGCCAGGATTTACAGGTCCAGTAATCGAGGGGTGGAAGTGGAAGCGGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549140.2 |
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CDS TCA 90 bp | TCAACAAATCAAGTGGTGCCTTATTGCTCAGTGAACATTAATAAGTaGGGTGGGGATTGGTGGACAAAGGAGCGGGAATCATTCAGTTGG | + |
Preference number: 5 (lower is better) Translates to: STNQVVPYCSVNINK*GGDWWTKERESFSW Trigger: CCAACTGAATGATTCCCGCTCCTTTGTCCACCAATCCCCACCTCACTTATTAATGTTCACTGAGCAATAAGGCACCACTTGATTTGTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647598.1 |
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CDS CCA 90 bp | TACCACATTTTCTTTATCCACTCATTGGTTGATGGGCACTCAGGTTaGTTTCATATTTTGACAGTTGCTAATTGTGCTGCTGTAAACATT | + |
Preference number: 5 (lower is better) Translates to: YHIFFIHSLVDGHSG*FHILTVANCAAVNI Trigger: AATGTTTACAGCAGCACAATTAGCAACTGTCAAAATATGAAACCAACCTGAGTGCCCATCAACCAATGAGTGGATAAAGAAAATGTGGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647598.1 |
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CDS GCA 72 bp | GCTGATTCAGAGCATACACAGCCCTCTGGAGAACTTTaGCCCAGCCCTGCAGAGTATTGTCACCTAGTTGGC | + |
Preference number: 6 (lower is better) Translates to: ADSEHTQPSGEL*PSPAEYCHLVG Trigger: GCCAACTAGGTGACAATACTCTGCAGGGCTGGGGCAAAGTTCTCCAGAGGGCTGTGTATGCTCTGAATCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549140.2 |
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CDS CCA 72 bp | CCACTTCCACCCCTCGATTACTGGACCTGTAAATCCTaGCTATGGGAGAAACAGTATCATGTATTGGAGGCT | + |
Preference number: 6 (lower is better) Translates to: PLPPLDYWTCKS*LWEKQYHVLEA Trigger: AGCCTCCAATACATGATACTGTTTCTCCCATAGCCAGGATTTACAGGTCCAGTAATCGAGGGGTGGAAGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549140.2 |
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CDS CAA 90 bp | TACTGGACCTGTAAATCCTGGCTATGGGAGAAACAGTATCATGTATaGGAGGCTGATTCAGAGCATACACAGCCCTCTGGAGAACTTTGC | + |
Preference number: 6 (lower is better) Translates to: YWTCKSWLWEKQYHV*EADSEHTQPSGELC Trigger: GCAAAGTTCTCCAGAGGGCTGTGTATGCTCTGAATCAGCCTCCAATACATGATACTGTTTCTCCCATAGCCAGGATTTACAGGTCCAGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549140.2 |
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CDS CAA 90 bp | GCCCAAAGTGTCCAGATGGCAATCTTAACTTCTAGTTTTATGGCATaGTTGTTGTGTCTCCTGGTGGCAGCACTCCTCCTTCTGGAACTA | + |
Preference number: 6 (lower is better) Translates to: AQSVQMAILTSSFMA*LLCLLVAALLLLEL Trigger: TAGTTCCAGAAGGAGGAGTGCTGCCACCAGGAGACACAACAACAATGCCATAAAACTAGAAGTTAAGATTGCCATCTGGACACTTTGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549140.2 |
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CDS TCA 72 bp | CTGGCTATGGGAGAAACAGTATCATGTATTGGAGGCTaGTTCAGAGCATACACAGCCCTCTGGAGAACTTTG | + |
Preference number: 6 (lower is better) Translates to: LAMGETVSCIGG*FRAYTALWRTL Trigger: CAAAGTTCTCCAGAGGGCTGTGTATGCTCTGAATCAGCCTCCAATACATGATACTGTTTCTCCCATAGCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549140.2 |
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CDS CCA 72 bp | CCACCCCTCGATTACTGGACCTGTAAATCCTGGCTATaGGAGAAACAGTATCATGTATTGGAGGCTGATTCA | + |
Preference number: 6 (lower is better) Translates to: PPLDYWTCKSWL*EKQYHVLEADS Trigger: TGAATCAGCCTCCAATACATGATACTGTTTCTCCCATAGCCAGGATTTACAGGTCCAGTAATCGAGGGGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549140.2 |
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CDS TCA 72 bp | CTTATCATTCAGCAACTCCATTGTGGAGTAGTAGACTaGTTTCATCTTGATAGTCTGGGCCAGTCACCCCAG | + |
Preference number: 6 (lower is better) Translates to: LIIQQLHCGVVD*FHLDSLGQSPQ Trigger: CTGGGGTGACTGGCCCAGACTATCAAGATGAAATCAGTCTACTACTCCACAATGGAGTTGCTGAATGATAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549140.2 |
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CDS CAA 72 bp | TGTAAATCCTGGCTATGGGAGAAACAGTATCATGTATaGGAGGCTGATTCAGAGCATACACAGCCCTCTGGA | + |
Preference number: 6 (lower is better) Translates to: CKSWLWEKQYHV*EADSEHTQPSG Trigger: TCCAGAGGGCTGTGTATGCTCTGAATCAGCCTCCAATACATGATACTGTTTCTCCCATAGCCAGGATTTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549140.2 |
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CDS CAA 72 bp | GTCCAGATGGCAATCTTAACTTCTAGTTTTATGGCATaGTTGTTGTGTCTCCTGGTGGCAGCACTCCTCCTT | + |
Preference number: 6 (lower is better) Translates to: VQMAILTSSFMA*LLCLLVAALLL Trigger: AAGGAGGAGTGCTGCCACCAGGAGACACAACAACAATGCCATAAAACTAGAAGTTAAGATTGCCATCTGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549140.2 |
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CDS GCA 72 bp | AGAGGGAAGAAATGTTCAGGGAGGGAAAGACAATCCTaGCCAGCTGTTGTAGTAAGAACATTGAATATTAAA | + |
Preference number: 6 (lower is better) Translates to: RGKKCSGRERQS*PAVVVRTLNIK Trigger: TTTAATATTCAATGTTCTTACTACAACAGCTGGGCAGGATTGTCTTTCCCTCCCTGAACATTTCTTCCCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000549140.2 ENST00000647598.1 |
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CDS CCA 72 bp | TTCTTTATCCACTCATTGGTTGATGGGCACTCAGGTTaGTTTCATATTTTGACAGTTGCTAATTGTGCTGCT | + |
Preference number: 6 (lower is better) Translates to: FFIHSLVDGHSG*FHILTVANCAA Trigger: AGCAGCACAATTAGCAACTGTCAAAATATGAAACCAACCTGAGTGCCCATCAACCAATGAGTGGATAAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647598.1 |
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CDS CAA 72 bp | ACTTCTTTTCCTCTAGGCAGATACCCATTAGTGGGATaGCTGATTTTCAATGTAAGTGTGAAGAATGTTCCC | + |
Preference number: 6 (lower is better) Translates to: TSFPLGRYPLVG*LIFNVSVKNVP Trigger: GGGAACATTCTTCACACTTACATTGAAAATCAGCAATCCCACTAATGGGTATCTGCCTAGAGGAAAAGAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647598.1 |
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CDS CAA 72 bp | TCATTGGTTGATGGGCACTCAGGTTGGTTTCATATTTaGACAGTTGCTAATTGTGCTGCTGTAAACATTTGT | + |
Preference number: 6 (lower is better) Translates to: SLVDGHSGWFHI*TVANCAAVNIC Trigger: ACAAATGTTTACAGCAGCACAATTAGCAACTGTCAAAATATGAAACCAACCTGAGTGCCCATCAACCAATGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647598.1 |
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CDS CAA 90 bp | CATATAATGACTTCTTTTCCTCTAGGCAGATACCCATTAGTGGGATaGCTGATTTTCAATGTAAGTGTGAAGAATGTTCCCTCTCCTTAT | + |
Preference number: 6 (lower is better) Translates to: HIMTSFPLGRYPLVG*LIFNVSVKNVPSPY Trigger: ATAAGGAGAGGGAACATTCTTCACACTTACATTGAAAATCAGCAATCCCACTAATGGGTATCTGCCTAGAGGAAAAGAAGTCATTATATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647598.1 |
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CDS TCA 72 bp | TGCAAACTTATTTCATTCAACTTCTCTATTCAGAGATaGTGTCACAAGGCCATTTCAGAAGTGTCATATCGC | + |
Preference number: 6 (lower is better) Translates to: CKLISFNFSIQR*CHKAISEVSYR Trigger: GCGATATGACACTTCTGAAATGGCCTTGTGACATCATCTCTGAATAGAGAAGTTGAATGAAATAAGTTTGCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000549140.2 ENST00000647598.1 |
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CDS GCA 72 bp | TGCTTATCATTCAGCAACTTACTTAGAATAATGGTCTaGAACTCCATCCAGGTTTCTGTGAATGCCATTATT | + |
Preference number: 6 (lower is better) Translates to: CLSFSNLLRIMV*NSIQVSVNAII Trigger: AATAATGGCATTCACAGAAACCTGGATGGAGTTGCAGACCATTATTCTAAGTAAGTTGCTGAATGATAAGCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647598.1 |