Pregenerated sensors for LINC02387 (Homo sapiens)
Ensembl gene IDs: ENSG00000256232Ensembl transcript IDs: ENST00000541749.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TCAGGACGTTACAGTCATGCCACCAGCTGGGGCTGCCAACTCATCTaGAGGCTCAACACAGGGGGACCGGAGTCCAAGCTCCCTCACATG | + |
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Preference number: 5 (lower is better) Translates to: SGRYSHATSWGCQLI*RLNTGGPESKLPHM Trigger: CATGTGAGGGAGCTTGGACTCCGGTCCCCCTGTGTTGAGCCTTCAGATGAGTTGGCAGCCCCAGCTGGTGGCATGACTGTAACGTCCTGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000541749.1 |
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| CDS CCA 90 bp | CTAGAGCTTTCCACAGCCTCTGGCTTGGTCTCTCCCTCTCCAGGCTaGCCACAGGCCCCCAGGGACCTATCTGCCATCTCTTGGAAATAT | + |
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Preference number: 5 (lower is better) Translates to: LELSTASGLVSPSPG*PQAPRDLSAISWKY Trigger: ATATTTCCAAGAGATGGCAGATAGGTCCCTGGGGGCCTGTGGCCAGCCTGGAGAGGGAGAGACCAAGCCAGAGGCTGTGGAAAGCTCTAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000541749.1 |
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| CDS TCA 90 bp | GGGCACTTCGTGACATGGCAGCTGACTTTCTGGGGACCATCCAAGTaGGAAAGAGCCCTTCTTGCCATTCCTAGAGCGATTTTCCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: GHFVTWQLTFWGPSK*ERALLAIPRAIFQP Trigger: AGGCTGGAAAATCGCTCTAGGAATGGCAAGAAGGGCTCTTTCTCACTTGGATGGTCCCCAGAAAGTCAGCTGCCATGTCACGAAGTGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000541749.1 |
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| CDS CCA 90 bp | GAAAGAGCCCTTCTTGCCATTCCTAGAGCGATTTTCCAGCCTGAGTaGTATGACTGCTTCCATTTCCTCGCCACTCTTGTTTGTCCCTGG | + |
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Preference number: 5 (lower is better) Translates to: ERALLAIPRAIFQPE*YDCFHFLATLVCPW Trigger: CCAGGGACAAACAAGAGTGGCGAGGAAATGGAAGCAGTCATACCACTCAGGCTGGAAAATCGCTCTAGGAATGGCAAGAAGGGCTCTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541749.1 |
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| CDS GCA 90 bp | CTTCTTGCCATTCCTAGAGCGATTTTCCAGCCTGAGTGGTATGACTaGTTCCATTTCCTCGCCACTCTTGTTTGTCCCTGGCAGTTCACT | + |
|
Preference number: 5 (lower is better) Translates to: LLAIPRAIFQPEWYD*FHFLATLVCPWQFT Trigger: AGTGAACTGCCAGGGACAAACAAGAGTGGCGAGGAAATGGAAGCAGTCATACCACTCAGGCTGGAAAATCGCTCTAGGAATGGCAAGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541749.1 |
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| CDS GCA 90 bp | CTCACAATTTCTTTGGGTCAGAAATACAGGTGTGGTTTAGCTGAATaGTTTCTGGCTGAAGGTGTTTCAGGACGTTACAGTCATGCCACC | + |
|
Preference number: 5 (lower is better) Translates to: LTISLGQKYRCGLAE*FLAEGVSGRYSHAT Trigger: GGTGGCATGACTGTAACGTCCTGAAACACCTTCAGCCAGAAAGCATTCAGCTAAACCACACCTGTATTTCTGACCCAAAGAAATTGTGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541749.1 |
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| CDS TCA 72 bp | TACAGTCATGCCACCAGCTGGGGCTGCCAACTCATCTaGAGGCTCAACACAGGGGGACCGGAGTCCAAGCTC | + |
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Preference number: 6 (lower is better) Translates to: YSHATSWGCQLI*RLNTGGPESKL Trigger: GAGCTTGGACTCCGGTCCCCCTGTGTTGAGCCTTCAGATGAGTTGGCAGCCCCAGCTGGTGGCATGACTGTA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000541749.1 |
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| CDS CCA 72 bp | TCAACACAGGGGGACCGGAGTCCAAGCTCCCTCACATaGTCACCAGCAGGATTCAGTTCCTCGAAGGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: STQGDRSPSSLT*SPAGFSSSKAV Trigger: GACAGCCTTCGAGGAACTGAATCCTGCTGGTGACCATGTGAGGGAGCTTGGACTCCGGTCCCCCTGTGTTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000541749.1 |
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| CDS TCA 72 bp | GTGACATGGCAGCTGACTTTCTGGGGACCATCCAAGTaGGAAAGAGCCCTTCTTGCCATTCCTAGAGCGATT | + |
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Preference number: 6 (lower is better) Translates to: VTWQLTFWGPSK*ERALLAIPRAI Trigger: AATCGCTCTAGGAATGGCAAGAAGGGCTCTTTCTCACTTGGATGGTCCCCAGAAAGTCAGCTGCCATGTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541749.1 |
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| CDS CAA 72 bp | CTTTCTGGGGACCATCCAAGTGAGAAAGAGCCCTTCTaGCCATTCCTAGAGCGATTTTCCAGCCTGAGTGGT | + |
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Preference number: 6 (lower is better) Translates to: LSGDHPSEKEPF*PFLERFSSLSG Trigger: ACCACTCAGGCTGGAAAATCGCTCTAGGAATGGCAAGAAGGGCTCTTTCTCACTTGGATGGTCCCCAGAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000541749.1 |
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| CDS CCA 72 bp | CTTCTTGCCATTCCTAGAGCGATTTTCCAGCCTGAGTaGTATGACTGCTTCCATTTCCTCGCCACTCTTGTT | + |
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Preference number: 6 (lower is better) Translates to: LLAIPRAIFQPE*YDCFHFLATLV Trigger: AACAAGAGTGGCGAGGAAATGGAAGCAGTCATACCACTCAGGCTGGAAAATCGCTCTAGGAATGGCAAGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541749.1 |
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| CDS GCA 72 bp | TCTTTGGGTCAGAAATACAGGTGTGGTTTAGCTGAATaGTTTCTGGCTGAAGGTGTTTCAGGACGTTACAGT | + |
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Preference number: 6 (lower is better) Translates to: SLGQKYRCGLAE*FLAEGVSGRYS Trigger: ACTGTAACGTCCTGAAACACCTTCAGCCAGAAAGCATTCAGCTAAACCACACCTGTATTTCTGACCCAAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541749.1 |
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| CDS CCA 72 bp | GACTGCTTCCATTTCCTCGCCACTCTTGTTTGTCCCTaGCAGTTCACTTTGATTCTCAAAAGTCCATTAAAA | + |
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Preference number: 6 (lower is better) Translates to: DCFHFLATLVCP*QFTLILKSPLK Trigger: TTTTAATGGACTTTTGAGAATCAAAGTGAACTGCCAGGGACAAACAAGAGTGGCGAGGAAATGGAAGCAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000541749.1 |
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| CDS CAA 72 bp | TTCAAGAGAAGAAATGTTTATTATCTCACAATTTCTTaGGGTCAGAAATACAGGTGTGGTTTAGCTGAATGC | + |
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Preference number: 6 (lower is better) Translates to: FKRRNVYYLTIS*GQKYRCGLAEC Trigger: GCATTCAGCTAAACCACACCTGTATTTCTGACCCAAAGAAATTGTGAGATAATAAACATTTCTTCTCTTGAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000541749.1 |
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