Pregenerated sensors for LINC02385 (Homo sapiens)

Ensembl gene IDs: ENSG00000257193

Ensembl transcript IDs: ENST00000547554.1

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GGAACAGACACCATTCATTTCACCATGCAGCTTTCTATATACTTCTaGGAAAGGGACGGGGCCTCGAATCCGGAAGCCCATCGCAGAGGT	+
Preference number: 5 (lower is better) Translates to: GTDTIHFTMQLSIYF*ERDGASNPEAHRRG Trigger: ACCTCTGCGATGGGCTTCCGGATTCGAGGCCCCGTCCCTTTCTCAGAAGTATATAGAAAGCTGCATGGTGAAATGAATGGTGTCTGTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000547554.1
CDS GCA 90 bp	CTGGGTATAAACTGTGAAGTGGAACAGACACCATTCATTTCACCATaGAGCTTTCTATATACTTCTGAGAAAGGGACGGGGCCTCGAATC	+
Preference number: 5 (lower is better) Translates to: LGINCEVEQTPFISP*SFLYTSEKGTGPRI Trigger: GATTCGAGGCCCCGTCCCTTTCTCAGAAGTATATAGAAAGCTGCATGGTGAAATGAATGGTGTCTGTTCCACTTCACAGTTTATACCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000547554.1
CDS CCA 72 bp	TCAACTCTGAACCCTGATGCTCACAGCAACGACTTCTaGCAAAACTGCCTAGCTTCGCCATTCCAGGAAGCA	+
Preference number: 6 (lower is better) Translates to: STLNPDAHSNDF*QNCLASPFQEA Trigger: TGCTTCCTGGAATGGCGAAGCTAGGCAGTTTTGCCAGAAGTCGTTGCTGTGAGCATCAGGGTTCAGAGTTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000547554.1
CDS TCA 72 bp	ACCATTCATTTCACCATGCAGCTTTCTATATACTTCTaGGAAAGGGACGGGGCCTCGAATCCGGAAGCCCAT	+
Preference number: 6 (lower is better) Translates to: TIHFTMQLSIYF*ERDGASNPEAH Trigger: ATGGGCTTCCGGATTCGAGGCCCCGTCCCTTTCTCAGAAGTATATAGAAAGCTGCATGGTGAAATGAATGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000547554.1
CDS TCA 72 bp	GTGCCAAGTCCTGAGTTAGATGCTGGGTATAAACTGTaGAGTGGAACAGACACCATTCATTTCACCATGCAG	+
Preference number: 6 (lower is better) Translates to: VPSPELDAGYKL*SGTDTIHFTMQ Trigger: CTGCATGGTGAAATGAATGGTGTCTGTTCCACTTCACAGTTTATACCCAGCATCTAACTCAGGACTTGGCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000547554.1
CDS GCA 72 bp	AACTGTGAAGTGGAACAGACACCATTCATTTCACCATaGAGCTTTCTATATACTTCTGAGAAAGGGACGGGG	+
Preference number: 6 (lower is better) Translates to: NCEVEQTPFISP*SFLYTSEKGTG Trigger: CCCCGTCCCTTTCTCAGAAGTATATAGAAAGCTGCATGGTGAAATGAATGGTGTCTGTTCCACTTCACAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000547554.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu