Pregenerated sensors for LINC02379 (Homo sapiens)
Ensembl gene IDs: ENSG00000251649Ensembl transcript IDs: ENST00000505741.2, ENST00000655624.1, ENST00000657991.1, ENST00000658298.1, ENST00000667815.1, ENST00000670367.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGGCCAAGCCTGGGGCTCAGTCATCTGTCTTGGAGCATGCTCTGGTaGGAGTGTTTAACTTGGATTCTTTCCATCACATGTGGTAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: WPSLGLSHLSWSMLW*ECLTWILSITCGSW Trigger: CCAGCTACCACATGTGATGGAAAGAATCCAAGTTAAACACTCTCACCAGAGCATGCTCCAAGACAGATGACTGAGCCCCAGGCTTGGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000505741.2 ENST00000655624.1 ENST00000658298.1 ENST00000667815.1 ENST00000670367.1 |
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| CDS TCA 90 bp | TGGCCAAGCCTGGGGCTCAGTCATCTGTCTTGGAGCATGCTCTGGTaGGAGTGTTTAACTTGGATTCTTTCCATCACATGTGGTAGCTTT | + |
|
Preference number: 5 (lower is better) Translates to: WPSLGLSHLSWSMLW*ECLTWILSITCGSF Trigger: AAAGCTACCACATGTGATGGAAAGAATCCAAGTTAAACACTCTCACCAGAGCATGCTCCAAGACAGATGACTGAGCCCCAGGCTTGGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657991.1 |
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| CDS CCA 90 bp | AGTTTAAGTCAAGGCACCAAATGCTGGCCCATTTTGGTTCTAATGTaGGCTCTCTTCCTGGCTTTTAGACAGATGTCTTCCCTCTGTGTC | + |
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Preference number: 5 (lower is better) Translates to: SLSQGTKCWPILVLM*ALFLAFRQMSSLCV Trigger: GACACAGAGGGAAGACATCTGTCTAAAAGCCAGGAAGAGAGCCCACATTAGAACCAAAATGGGCCAGCATTTGGTGCCTTGACTTAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655624.1 |
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| CDS CCA 72 bp | CAAGGCACCAAATGCTGGCCCATTTTGGTTCTAATGTaGGCTCTCTTCCTGGCTTTTAGACAGATGTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: QGTKCWPILVLM*ALFLAFRQMSS Trigger: GGAAGACATCTGTCTAAAAGCCAGGAAGAGAGCCCACATTAGAACCAAAATGGGCCAGCATTTGGTGCCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000655624.1 |
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| CDS CCA 72 bp | TGGAGGCTGAGAAGTTTAAGTCAAGGCACCAAATGCTaGCCCATTTTGGTTCTAATGTGGGCTCTCTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: WRLRSLSQGTKC*PILVLMWALFL Trigger: CAGGAAGAGAGCCCACATTAGAACCAAAATGGGCCAGCATTTGGTGCCTTGACTTAAACTTCTCAGCCTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655624.1 |
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| CDS CAA 72 bp | ATTGTATTGGCCAAGCCTGGGGCTCAGTCATCTGTCTaGGAGCATGCTCTGGTGAGAGTGTTTAACTTGGAT | + |
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Preference number: 6 (lower is better) Translates to: IVLAKPGAQSSV*EHALVRVFNLD Trigger: ATCCAAGTTAAACACTCTCACCAGAGCATGCTCCAAGACAGATGACTGAGCCCCAGGCTTGGCCAATACAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000505741.2 ENST00000655624.1 ENST00000657991.1 ENST00000658298.1 ENST00000667815.1 ENST00000670367.1 |
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| CDS TCA 72 bp | CTGGGGCTCAGTCATCTGTCTTGGAGCATGCTCTGGTaGGAGTGTTTAACTTGGATTCTTTCCATCACATGT | + |
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Preference number: 6 (lower is better) Translates to: LGLSHLSWSMLW*ECLTWILSITC Trigger: ACATGTGATGGAAAGAATCCAAGTTAAACACTCTCACCAGAGCATGCTCCAAGACAGATGACTGAGCCCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000505741.2 ENST00000655624.1 ENST00000657991.1 ENST00000658298.1 ENST00000667815.1 ENST00000670367.1 |
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| CDS GCA 72 bp | TTCTGGAGGCTGAGAAGTTTAAGTCAAGGCACCAAATaGTGGCCCATTTTGGTTCTAATGTGGGCTCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: FWRLRSLSQGTK*WPILVLMWALF Trigger: GAAGAGAGCCCACATTAGAACCAAAATGGGCCAGCATTTGGTGCCTTGACTTAAACTTCTCAGCCTCCAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655624.1 |
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| CDS CAA 72 bp | AGAAGTTTAAGTCAAGGCACCAAATGCTGGCCCATTTaGGTTCTAATGTGGGCTCTCTTCCTGGCTTTTAGA | + |
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Preference number: 6 (lower is better) Translates to: RSLSQGTKCWPI*VLMWALFLAFR Trigger: TCTAAAAGCCAGGAAGAGAGCCCACATTAGAACCAAAATGGGCCAGCATTTGGTGCCTTGACTTAAACTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655624.1 |
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| CDS CCA 72 bp | ATCAGGAGTGTACTGGTCCTTATGGCAGGCATCAAGTaGGTTACTGCCAGGTCTTTGAACTACAAAAATAAA | + |
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Preference number: 6 (lower is better) Translates to: IRSVLVLMAGIK*VTARSLNYKNK Trigger: TTTATTTTTGTAGTTCAAAGACCTGGCAGTAACCCACTTGATGCCTGCCATAAGGACCAGTACACTCCTGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000505741.2 ENST00000655624.1 ENST00000657991.1 ENST00000658298.1 ENST00000667815.1 ENST00000670367.1 |
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