Pregenerated sensors for LINC02378 (Homo sapiens)
Ensembl gene IDs: ENSG00000256994Ensembl transcript IDs: ENST00000540399.1, ENST00000653611.1, ENST00000657845.1, ENST00000664390.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAGACAAGAAGACAAATCGCTGAAGTCAGATATGAATGTAAGGCCTaGAGCTCAGCCGAGAGTTCTAGAGAGATGGACCAACAACAGGTC | + |
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Preference number: 5 (lower is better) Translates to: ETRRQIAEVRYECKA*SSAESSREMDQQQV Trigger: GACCTGTTGTTGGTCCATCTCTCTAGAACTCTCGGCTGAGCTTCAGGCCTTACATTCATATCTGACTTCAGCGATTTGTCTTCTTGTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000540399.1 ENST00000664390.1 |
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| CDS TCA 90 bp | GTTCAGAAGCTTCTGCAAAAATCGCAGGGAGAAATAGTGTCTATGTaGAATAACTCAGTGACAGGTGGAAGAAGAGGTGGATGGAGCATA | + |
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Preference number: 5 (lower is better) Translates to: VQKLLQKSQGEIVSM*NNSVTGGRRGGWSI Trigger: TATGCTCCATCCACCTCTTCTTCCACCTGTCACTGAGTTATTTCACATAGACACTATTTCTCCCTGCGATTTTTGCAGAAGCTTCTGAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000540399.1 |
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| CDS CCA 90 bp | ATGAGGAAGGTCAAGCAGCCCAGTAGAGAGGCCAATTCATTTTATTaGCTATTAGTAGATGCGGTCATGTTAAGGTGGAGAATGAAACAT | + |
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Preference number: 5 (lower is better) Translates to: MRKVKQPSREANSFY*LLVDAVMLRWRMKH Trigger: ATGTTTCATTCTCCACCTTAACATGACCGCATCTACTAATAGCCAATAAAATGAATTGGCCTCTCTACTGGGCTGCTTGACCTTCCTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000540399.1 ENST00000653611.1 ENST00000657845.1 ENST00000664390.1 |
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| CDS TCA 72 bp | TCTTATCTGCTCTGGGAAAAACCAACTGCCATGTCATaGGGAAGGTCAAGCAGCCCAGTAGAGAGGCCAATT | + |
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Preference number: 6 (lower is better) Translates to: SYLLWEKPTAMS*GRSSSPVERPI Trigger: AATTGGCCTCTCTACTGGGCTGCTTGACCTTCCTCATGACATGGCAGTTGGTTTTTCCCAGAGCAGATAAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000540399.1 ENST00000657845.1 ENST00000664390.1 |
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| CDS TCA 72 bp | ACTTATCTGCTCTGGGAAAAACCAACTGCCATGTCATaGGGAAGGTCAAGCAGCCCAGTAGAGAGGCCAATT | + |
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Preference number: 6 (lower is better) Translates to: TYLLWEKPTAMS*GRSSSPVERPI Trigger: AATTGGCCTCTCTACTGGGCTGCTTGACCTTCCTCATGACATGGCAGTTGGTTTTTCCCAGAGCAGATAAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653611.1 |
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| CDS TCA 72 bp | AGACAAATCGCTGAAGTCAGATATGAATGTAAGGCCTaGAGCTCAGCCGAGAGTTCTAGAGAGATGGACCAA | + |
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Preference number: 6 (lower is better) Translates to: RQIAEVRYECKA*SSAESSREMDQ Trigger: TTGGTCCATCTCTCTAGAACTCTCGGCTGAGCTTCAGGCCTTACATTCATATCTGACTTCAGCGATTTGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000540399.1 ENST00000664390.1 |
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| CDS CCA 72 bp | GTCAAGCAGCCCAGTAGAGAGGCCAATTCATTTTATTaGCTATTAGTAGATGCGGTCATGTTAAGGTGGAGA | + |
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Preference number: 6 (lower is better) Translates to: VKQPSREANSFY*LLVDAVMLRWR Trigger: TCTCCACCTTAACATGACCGCATCTACTAATAGCCAATAAAATGAATTGGCCTCTCTACTGGGCTGCTTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000540399.1 ENST00000653611.1 ENST00000657845.1 ENST00000664390.1 |
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| CDS CCA 72 bp | CCTGTCTCCTGTATAGCCTACTCACATATTGAATCATaGTTGTTCTTATCTGCTCTGGGAAAAACCAACTGC | + |
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Preference number: 6 (lower is better) Translates to: PVSCIAYSHIES*LFLSALGKTNC Trigger: GCAGTTGGTTTTTCCCAGAGCAGATAAGAACAACCATGATTCAATATGTGAGTAGGCTATACAGGAGACAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000540399.1 ENST00000657845.1 ENST00000664390.1 |
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| CDS TCA 72 bp | AATGGTTCCTGTCTCCTGTATAGCCTACTCACATATTaGATCATGGTTGTTCTTATCTGCTCTGGGAAAAAC | + |
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Preference number: 6 (lower is better) Translates to: NGSCLLYSLLTY*IMVVLICSGKN Trigger: GTTTTTCCCAGAGCAGATAAGAACAACCATGATTCAATATGTGAGTAGGCTATACAGGAGACAGGAACCATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000540399.1 ENST00000657845.1 ENST00000664390.1 |
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| CDS CCA 72 bp | TTAGGGCCAAGAGAAGAATCCAGTATTTCCACCTCATaGCAGGAATTACATAGTCCTTACCAAATTGATATG | + |
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Preference number: 6 (lower is better) Translates to: LGPREESSISTS*QELHSPYQIDM Trigger: CATATCAATTTGGTAAGGACTATGTAATTCCTGCCATGAGGTGGAAATACTGGATTCTTCTCTTGGCCCTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000540399.1 ENST00000664390.1 |
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