Pregenerated sensors for LINC02371 (Homo sapiens)
Ensembl gene IDs: ENSG00000274659Ensembl transcript IDs: ENST00000613818.2, ENST00000670289.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCGCATGTTCTCACTCACAAGCGGGAGTTGAACAATGAGAACACATaGACACGGGGAGAGGAACATCACACACCGGGCCAGTCTGGGGGT | + |
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Preference number: 5 (lower is better) Translates to: PHVLTHKRELNNENT*TRGEEHHTPGQSGG Trigger: ACCCCCAGACTGGCCCGGTGTGTGATGTTCCTCTCCCCGTGTCCATGTGTTCTCATTGTTCAACTCCCGCTTGTGAGTGAGAACATGCGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000670289.1 |
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| CDS TCA 90 bp | AAACCAAACACCGCATGTTCTCACTCACAAGCGGGAGTTGAACAATaGGAACACATGGACACGGGGAGAGGAACATCACACACCGGGCCA | + |
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Preference number: 5 (lower is better) Translates to: KPNTACSHSQAGVEQ*EHMDTGRGTSHTGP Trigger: TGGCCCGGTGTGTGATGTTCCTCTCCCCGTGTCCATGTGTTCTCATTGTTCAACTCCCGCTTGTGAGTGAGAACATGCGGTGTTTGGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670289.1 |
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| CDS TCA 90 bp | CCGGGCCAGTCTGGGGGTGGGGGAGCTAAAGAAGGGATACCATTATaGGAAATACCTAATGTAGATGACAGGTTAATGGGTGCAGCAAAC | + |
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Preference number: 5 (lower is better) Translates to: PGQSGGGGAKEGIPL*EIPNVDDRLMGAAN Trigger: GTTTGCTGCACCCATTAACCTGTCATCTACATTAGGTATTTCTCATAATGGTATCCCTTCTTTAGCTCCCCCACCCCCAGACTGGCCCGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000670289.1 |
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| CDS CCA 90 bp | GGACAGACACAAATATGCTTGGACATGGCTATCTCTGATCTTGTGTaGCTCAAAATAACTTACAGAGTCTTCATTTTCAGAGTGTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: GQTQICLDMAISDLV*LKITYRVFIFRVFS Trigger: TGAGAACACTCTGAAAATGAAGACTCTGTAAGTTATTTTGAGCCACACAAGATCAGAGATAGCCATGTCCAAGCATATTTGTGTCTGTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000613818.2 |
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| CDS TCA 72 bp | ACCGCATGTTCTCACTCACAAGCGGGAGTTGAACAATaGGAACACATGGACACGGGGAGAGGAACATCACAC | + |
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Preference number: 6 (lower is better) Translates to: TACSHSQAGVEQ*EHMDTGRGTSH Trigger: GTGTGATGTTCCTCTCCCCGTGTCCATGTGTTCTCATTGTTCAACTCCCGCTTGTGAGTGAGAACATGCGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670289.1 |
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| CDS TCA 72 bp | ACCAAACACCGCATGTTCTCACTCACAAGCGGGAGTTaGACAATGAGAACACATGGACACGGGGAGAGGAAC | + |
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Preference number: 6 (lower is better) Translates to: TKHRMFSLTSGS*TMRTHGHGERN Trigger: GTTCCTCTCCCCGTGTCCATGTGTTCTCATTGTTCAACTCCCGCTTGTGAGTGAGAACATGCGGTGTTTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670289.1 |
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| CDS CAA 72 bp | ATAAAAGCCTGCAATTGTGGACAGACACAAATATGCTaGGACATGGCTATCTCTGATCTTGTGTGGCTCAAA | + |
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Preference number: 6 (lower is better) Translates to: IKACNCGQTQIC*DMAISDLVWLK Trigger: TTTGAGCCACACAAGATCAGAGATAGCCATGTCCAAGCATATTTGTGTCTGTCCACAATTGCAGGCTTTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000613818.2 |
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| CDS TCA 72 bp | TGGACAGACACAAATATGCTTGGACATGGCTATCTCTaGTCTTGTGTGGCTCAAAATAACTTACAGAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: WTDTNMLGHGYL*SCVAQNNLQSL Trigger: AAGACTCTGTAAGTTATTTTGAGCCACACAAGATCAGAGATAGCCATGTCCAAGCATATTTGTGTCTGTCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000613818.2 |
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| CDS GCA 72 bp | CTATTCACAATAGCAAAGACTTGGAACCAACCCAAATaGCCATGTATGATAGACTGGATAAAGACAATGTGG | + |
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Preference number: 6 (lower is better) Translates to: LFTIAKTWNQPK*PCMIDWIKTMW Trigger: CCACATTGTCTTTATCCAGTCTATCATACATGGGCATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000670289.1 |
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| CDS CCA 72 bp | TCATGGATTCTGGATATAAGTCTTTTGTCTGCTATATaGCTTGCAGATGTTTTCACTCAGTCTGTAGCATGT | + |
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Preference number: 6 (lower is better) Translates to: SWILDISLLSAI*LADVFTQSVAC Trigger: ACATGCTACAGACTGAGTGAAAACATCTGCAAGCCATATAGCAGACAAAAGACTTATATCCAGAATCCATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000613818.2 |
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| CDS CAA 72 bp | TTTGAGAGTTCTTCATGGATTCTGGATATAAGTCTTTaGTCTGCTATATGGCTTGCAGATGTTTTCACTCAG | + |
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Preference number: 6 (lower is better) Translates to: FESSSWILDISL*SAIWLADVFTQ Trigger: CTGAGTGAAAACATCTGCAAGCCATATAGCAGACAAAAGACTTATATCCAGAATCCATGAAGAACTCTCAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000613818.2 |
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| CDS CAA 72 bp | ACTTTTGCACCTTTGTCAGAAATCACTTGGCCATATTaGTGTAGATTCATTTCTGTACTCTGTATTCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: TFAPLSEITWPY*CRFISVLCILF Trigger: GAACAGAATACAGAGTACAGAAATGAATCTACACAAATATGGCCAAGTGATTTCTGACAAAGGTGCAAAAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000613818.2 |
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