Pregenerated sensors for LINC02365 (Homo sapiens)
Ensembl gene IDs: ENSG00000254233Ensembl transcript IDs: ENST00000519173.1, ENST00000520280.1, ENST00000522554.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CATAGAAGACTGTTAGATTACAGATGTTTAACATTGTCTCATCTCTaGCATCTCCCTTGCCGCCATCTTCCAAGGCTTCAAATCTCCATC | + |
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Preference number: 5 (lower is better) Translates to: HRRLLDYRCLTLSHL*HLPCRHLPRLQISI Trigger: GATGGAGATTTGAAGCCTTGGAAGATGGCGGCAAGGGAGATGCCAGAGATGAGACAATGTTAAACATCTGTAATCTAACAGTCTTCTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519173.1 ENST00000520280.1 |
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| CDS CCA 90 bp | TTCATTTCTGTGTCTATCCAGCTTGGAGTCCATGGTTCATCAATTTaGAAAGTCATTTTGCAGTACTCCAAAATCTGTGGCTCCTGTCTT | + |
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Preference number: 5 (lower is better) Translates to: FISVSIQLGVHGSSI*KVILQYSKICGSCL Trigger: AAGACAGGAGCCACAGATTTTGGAGTACTGCAAAATGACTTTCCAAATTGATGAACCATGGACTCCAAGCTGGATAGACACAGAAATGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000522554.1 |
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| CDS CCA 72 bp | CTGTTAGATTACAGATGTTTAACATTGTCTCATCTCTaGCATCTCCCTTGCCGCCATCTTCCAAGGCTTCAA | + |
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Preference number: 6 (lower is better) Translates to: LLDYRCLTLSHL*HLPCRHLPRLQ Trigger: TTGAAGCCTTGGAAGATGGCGGCAAGGGAGATGCCAGAGATGAGACAATGTTAAACATCTGTAATCTAACAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519173.1 ENST00000520280.1 |
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| CDS CAA 72 bp | AGATATGCATCTAGCTCCTCGAGCAGAGGAATAACTTaGAAGAGAATGGGAGGCAGGTTTGTCCTAAGAAGT | + |
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Preference number: 6 (lower is better) Translates to: RYASSSSSRGIT*KRMGGRFVLRS Trigger: ACTTCTTAGGACAAACCTGCCTCCCATTCTCTTCAAAGTTATTCCTCTGCTCGAGGAGCTAGATGCATATCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000520280.1 |
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| CDS CAA 90 bp | GTAATAAACTCCCATAGAAGACTGTTAGATTACAGATGTTTAACATaGTCTCATCTCTGGCATCTCCCTTGCCGCCATCTTCCAAGGCTT | + |
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Preference number: 6 (lower is better) Translates to: VINSHRRLLDYRCLT*SHLWHLPCRHLPRL Trigger: AAGCCTTGGAAGATGGCGGCAAGGGAGATGCCAGAGATGAGACAATGTTAAACATCTGTAATCTAACAGTCTTCTATGGGAGTTTATTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519173.1 ENST00000520280.1 |
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| CDS CAA 72 bp | TGTGTCTATCCAGCTTGGAGTCCATGGTTCATCAATTaGGAAAGTCATTTTGCAGTACTCCAAAATCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: CVYPAWSPWFIN*ESHFAVLQNLW Trigger: CCACAGATTTTGGAGTACTGCAAAATGACTTTCCAAATTGATGAACCATGGACTCCAAGCTGGATAGACACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000522554.1 |
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| CDS CAA 90 bp | TTTCATTTCTGTGTCTATCCAGCTTGGAGTCCATGGTTCATCAATTaGGAAAGTCATTTTGCAGTACTCCAAAATCTGTGGCTCCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: FHFCVYPAWSPWFIN*ESHFAVLQNLWLLS Trigger: AGACAGGAGCCACAGATTTTGGAGTACTGCAAAATGACTTTCCAAATTGATGAACCATGGACTCCAAGCTGGATAGACACAGAAATGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000522554.1 |
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| CDS TCA 72 bp | AATGGGAGGCAGGTTTGTCCTAAGAAGTTTCCAGCTTaGATTTTCCTTAGTGATTTTGGAGGCTCAAGATAT | + |
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Preference number: 6 (lower is better) Translates to: NGRQVCPKKFPA*IFLSDFGGSRY Trigger: ATATCTTGAGCCTCCAAAATCACTAAGGAAAATTCAAGCTGGAAACTTCTTAGGACAAACCTGCCTCCCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000520280.1 |
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| CDS CAA 72 bp | CTTGGAGTCCATGGTTCATCAATTTGGAAAGTCATTTaGCAGTACTCCAAAATCTGTGGCTCCTGTCTTTTT | + |
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Preference number: 6 (lower is better) Translates to: LGVHGSSIWKVI*QYSKICGSCLF Trigger: AAAAAGACAGGAGCCACAGATTTTGGAGTACTGCAAAATGACTTTCCAAATTGATGAACCATGGACTCCAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522554.1 |
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| CDS CAA 90 bp | TTATTCCCTATTAGTCCCTTCTTTTCATTTCTGTGTCTATCCAGCTaGGAGTCCATGGTTCATCAATTTGGAAAGTCATTTTGCAGTACT | + |
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Preference number: 6 (lower is better) Translates to: LFPISPFFSFLCLSS*ESMVHQFGKSFCST Trigger: AGTACTGCAAAATGACTTTCCAAATTGATGAACCATGGACTCCAAGCTGGATAGACACAGAAATGAAAAGAAGGGACTAATAGGGAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000519173.1 ENST00000522554.1 |
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| CDS CAA 72 bp | ATTAGTCCCTTCTTTTCATTTCTGTGTCTATCCAGCTaGGAGTCCATGGTTCATCAATTTGGAAAGTCATTT | + |
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Preference number: 6 (lower is better) Translates to: ISPFFSFLCLSS*ESMVHQFGKSF Trigger: AAATGACTTTCCAAATTGATGAACCATGGACTCCAAGCTGGATAGACACAGAAATGAAAAGAAGGGACTAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000519173.1 ENST00000522554.1 |
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