Pregenerated sensors for LINC02349 (Homo sapiens)
Ensembl gene IDs: ENSG00000259284Ensembl transcript IDs: ENST00000561386.1, ENST00000662940.1, ENST00000671175.1
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCAGATTTAGAGAGGGTAAGAGAACACATGCCATCTACATATTACTaGTCAGGAGCAAAAACCATAGACCTAAGCTTGACTTGCATTGCT | + |
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Preference number: 5 (lower is better) Translates to: PDLERVREHMPSTYY*SGAKTIDLSLTCIA Trigger: AGCAATGCAAGTCAAGCTTAGGTCTATGGTTTTTGCTCCTGATCAGTAATATGTAGATGGCATGTGTTCTCTTACCCTCTCTAAATCTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000561386.1 ENST00000662940.1 ENST00000671175.1 |
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| CDS TCA 72 bp | TCAACTCATGCCAGCCTGTGTCCAATAAAGACTCCATaGTCGAAACATTGCATTGGATTGCATTCTCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: STHASLCPIKTP*SKHCIGLHSLW Trigger: CCAGAGAGAATGCAATCCAATGCAATGTTTCGATCATGGAGTCTTTATTGGACACAGGCTGGCATGAGTTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000561386.1 ENST00000662940.1 ENST00000671175.1 |
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| CDS TCA 72 bp | TTCCTCCCAGGAGCATTTGTAGCTCAGTTATTATCATaGACAAAGCATGCACGTAATGCTCACATGCTGCAT | + |
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Preference number: 6 (lower is better) Translates to: FLPGAFVAQLLS*TKHARNAHMLH Trigger: ATGCAGCATGTGAGCATTACGTGCATGCTTTGTTCATGATAATAACTGAGCTACAAATGCTCCTGGGAGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000671175.1 |
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| CDS CAA 72 bp | AAGCAAGATATGTGGGCCGTGAGATACAGGTTTTATTaGTGTGTGTGTGTACAAGTATATGATGAATATATA | + |
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Preference number: 6 (lower is better) Translates to: KQDMWAVRYRFY*CVCVQVYDEYI Trigger: TATATATTCATCATATACTTGTACACACACACACAAATAAAACCTGTATCTCACGGCCCACATATCTTGCTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000561386.1 ENST00000662940.1 ENST00000671175.1 |
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