Pregenerated sensors for LINC02344 (Homo sapiens)
Ensembl gene IDs: ENSG00000227911Ensembl transcript IDs: ENST00000443576.3
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ACAGGTGAATTTAACCTCTCTGAAGTTCCATCAGCTCTTCTAAAATaGATGACTTGGACAAGATCATCTATAAGACATCCATGTGCTCTA | + |
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Preference number: 5 (lower is better) Translates to: TGEFNLSEVPSALLK*MTWTRSSIRHPCAL Trigger: TAGAGCACATGGATGTCTTATAGATGATCTTGTCCAAGTCATTCATTTTAGAAGAGCTGATGGAACTTCAGAGAGGTTAAATTCACCTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443576.3 |
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| CDS CAA 72 bp | TGTCTCATTAATGCAATAGAGATCACGGCACCAGCTTaGTCTCCTGTGAGGGACTTTTGTTACAATCTGTTG | + |
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Preference number: 6 (lower is better) Translates to: CLINAIEITAPA*SPVRDFCYNLL Trigger: CAACAGATTGTAACAAAAGTCCCTCACAGGAGACAAAGCTGGTGCCGTGATCTCTATTGCATTAATGAGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443576.3 |
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| CDS CAA 90 bp | ATCCTCATTTGTCTCATTAATGCAATAGAGATCACGGCACCAGCTTaGTCTCCTGTGAGGGACTTTTGTTACAATCTGTTGATTTTAAAC | + |
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Preference number: 6 (lower is better) Translates to: ILICLINAIEITAPA*SPVRDFCYNLLILN Trigger: GTTTAAAATCAACAGATTGTAACAAAAGTCCCTCACAGGAGACAAAGCTGGTGCCGTGATCTCTATTGCATTAATGAGACAAATGAGGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000443576.3 |
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| CDS CAA 90 bp | AAGTATGATTTCACTTATAATCACAAGAGTCAGTGTGACTTGAAGTaGGGCTGTAATCTCAAACTTGTCACTAAGGAGATAGGTGACCTG | + |
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Preference number: 6 (lower is better) Translates to: KYDFTYNHKSQCDLK*GCNLKLVTKEIGDL Trigger: CAGGTCACCTATCTCCTTAGTGACAAGTTTGAGATTACAGCCCAACTTCAAGTCACACTGACTCTTGTGATTATAAGTGAAATCATACTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443576.3 |
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| CDS CCA 72 bp | CTAATTTCAGAAACAGGCATCTTGCTCAGGAATGAGTaGCCAAGTATGATTTCACTTATAATCACAAGAGTC | + |
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Preference number: 6 (lower is better) Translates to: LISETGILLRNE*PSMISLIITRV Trigger: GACTCTTGTGATTATAAGTGAAATCATACTTGGCCACTCATTCCTGAGCAAGATGCCTGTTTCTGAAATTAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443576.3 |
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| CDS CAA 72 bp | GCTTTGTCTCCTGTGAGGGACTTTTGTTACAATCTGTaGATTTTAAACCACTGTTATATTACATTCATAGAC | + |
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Preference number: 6 (lower is better) Translates to: ALSPVRDFCYNL*ILNHCYITFID Trigger: GTCTATGAATGTAATATAACAGTGGTTTAAAATCAACAGATTGTAACAAAAGTCCCTCACAGGAGACAAAGC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000443576.3 |
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