Pregenerated sensors for LINC02342 (Homo sapiens)

Ensembl gene IDs: ENSG00000280580

Ensembl transcript IDs: ENST00000627910.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AGCCTTTGGCAATTAAGACAGGACACCAAGATGCAAGCGCCTGGTTaGAATGGATCAAATATTCCATCTTATCCAAAGAAGCTTGTTCTT	+
Preference number: 5 (lower is better) Translates to: SLWQLRQDTKMQAPG*NGSNIPSYPKKLVL Trigger: AAGAACAAGCTTCTTTGGATAAGATGGAATATTTGATCCATTCCAACCAGGCGCTTGCATCTTGGTGTCCTGTCTTAATTGCCAAAGGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627910.1
CDS GCA 72 bp	CCATCTGTGAGAGCACACCCTTCCATAGAAGTACCTTaGCTTCCACATTCAGTAACTGGGAGAGAGCTGAGA	+
Preference number: 6 (lower is better) Translates to: PSVRAHPSIEVP*LPHSVTGRELR Trigger: TCTCAGCTCTCTCCCAGTTACTGAATGTGGAAGGCAAGGTACTTCTATGGAAGGGTGTGCTCTCACAGATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627910.1
CDS CAA 72 bp	TCCATCTGTGAGAGCACACCCTTCCATAGAAGTACCTaGCCTTCCACATTCAGTAACTGGGAGAGAGCTGAG	+
Preference number: 6 (lower is better) Translates to: SICESTPFHRST*PSTFSNWERAE Trigger: CTCAGCTCTCTCCCAGTTACTGAATGTGGAAGGCAAGGTACTTCTATGGAAGGGTGTGCTCTCACAGATGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627910.1
CDS CAA 90 bp	CAGCCTTTGGCAATTAAGACAGGACACCAAGATGCAAGCGCCTGGTaGGAATGGATCAAATATTCCATCTTATCCAAAGAAGCTTGTTCT	+
Preference number: 6 (lower is better) Translates to: QPLAIKTGHQDASAW*EWIKYSILSKEACS Trigger: AGAACAAGCTTCTTTGGATAAGATGGAATATTTGATCCATTCCAACCAGGCGCTTGCATCTTGGTGTCCTGTCTTAATTGCCAAAGGCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627910.1
CDS CCA 72 bp	AAGACAGGACACCAAGATGCAAGCGCCTGGTTGGAATaGATCAAATATTCCATCTTATCCAAAGAAGCTTGT	+
Preference number: 6 (lower is better) Translates to: KTGHQDASAWLE*IKYSILSKEAC Trigger: ACAAGCTTCTTTGGATAAGATGGAATATTTGATCCATTCCAACCAGGCGCTTGCATCTTGGTGTCCTGTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627910.1
CDS CAA 72 bp	GCAATTAAGACAGGACACCAAGATGCAAGCGCCTGGTaGGAATGGATCAAATATTCCATCTTATCCAAAGAA	+
Preference number: 6 (lower is better) Translates to: AIKTGHQDASAW*EWIKYSILSKE Trigger: TTCTTTGGATAAGATGGAATATTTGATCCATTCCAACCAGGCGCTTGCATCTTGGTGTCCTGTCTTAATTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000627910.1
CDS GCA 72 bp	CAAGACATGTTTAAAAAGTTTGAAGAGAAAAATCATTaGTCCATCTGTGAGAGCACACCCTTCCATAGAAGT	+
Preference number: 6 (lower is better) Translates to: QDMFKKFEEKNH*SICESTPFHRS Trigger: ACTTCTATGGAAGGGTGTGCTCTCACAGATGGAGCAATGATTTTTCTCTTCAAACTTTTTAAACATGTCTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000627910.1
CDS CAA 72 bp	TCAAATATTCCATCTTATCCAAAGAAGCTTGTTCTTTaGGAAAATCAAGCAGAAGAACTAAGCCAAGACATG	+
Preference number: 6 (lower is better) Translates to: SNIPSYPKKLVL*ENQAEELSQDM Trigger: CATGTCTTGGCTTAGTTCTTCTGCTTGATTTTCCAAAAGAACAAGCTTCTTTGGATAAGATGGAATATTTGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000627910.1

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