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Pregenerated sensors for LINC02340 (Homo sapiens)

Ensembl gene IDs: ENSG00000275294

Ensembl transcript IDs: ENST00000610335.4, ENST00000620494.1

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp TGTGTCTCTCCAAAGCTCCAACCAGGGCTGCTTCTCCAGCCAACCTaGCGCAGACTGGCACGCAATTCCCCCAGAGCCACTTCTTCCTCT +
Preference number: 5 (lower is better)
Translates to: CVSPKLQPGLLLQPT*RRLARNSPRATSSS
Trigger: AGAGGAAGAAGTGGCTCTGGGGGAATTGCGTGCCAGTCTGCGGCAGGTTGGCTGGAGAAGCAGCCCTGGTTGGAGCTTTGGAGAGACACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000610335.4
CDS GCA 72 bp GGTGACAGAGCCAGATCCGCCAGCCGCAGTTTTCCCTaGGGAGACGCGGATACAAGGCAGCTTCCGGCGAAG +
Preference number: 6 (lower is better)
Translates to: GDRARSASRSFP*GDADTRQLPAK
Trigger: CTTCGCCGGAAGCTGCCTTGTATCCGCGTCTCCGCAGGGAAAACTGCGGCTGGCGGATCTGGCTCTGTCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620494.1
CDS GCA 72 bp CCAAAGCTCCAACCAGGGCTGCTTCTCCAGCCAACCTaGCGCAGACTGGCACGCAATTCCCCCAGAGCCACT +
Preference number: 6 (lower is better)
Translates to: PKLQPGLLLQPT*RRLARNSPRAT
Trigger: AGTGGCTCTGGGGGAATTGCGTGCCAGTCTGCGGCAGGTTGGCTGGAGAAGCAGCCCTGGTTGGAGCTTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000610335.4
CDS CCA 72 bp AACCAGGGCTGCTTCTCCAGCCAACCTGCCGCAGACTaGCACGCAATTCCCCCAGAGCCACTTCTTCCTCTC +
Preference number: 6 (lower is better)
Translates to: NQGCFSSQPAAD*HAIPPEPLLPL
Trigger: GAGAGGAAGAAGTGGCTCTGGGGGAATTGCGTGCCAGTCTGCGGCAGGTTGGCTGGAGAAGCAGCCCTGGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000610335.4
CDS GCA 72 bp AATGCACATGTGTCTCTCCAAAGCTCCAACCAGGGCTaGTTCTCCAGCCAACCTGCCGCAGACTGGCACGCA +
Preference number: 6 (lower is better)
Translates to: NAHVSLQSSNQG*FSSQPAADWHA
Trigger: TGCGTGCCAGTCTGCGGCAGGTTGGCTGGAGAAGCAGCCCTGGTTGGAGCTTTGGAGAGACACATGTGCATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610335.4
CDS GCA 72 bp GGCTGTCATCGGAATGAAGGCTCTCACCAGATGTGGTaGCTTGAAGTTGGACTTCTCAACCTCCATCACGCG +
Preference number: 6 (lower is better)
Translates to: GCHRNEGSHQMW*LEVGLLNLHHA
Trigger: CGCGTGATGGAGGTTGAGAAGTCCAACTTCAAGGCACCACATCTGGTGAGAGCCTTCATTCCGATGACAGCC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620494.1
CDS CAA 72 bp GGAATGAAGGCTCTCACCAGATGTGGTGCCTTGAAGTaGGACTTCTCAACCTCCATCACGCGAAGGTCTGCA +
Preference number: 6 (lower is better)
Translates to: GMKALTRCGALK*DFSTSITRRSA
Trigger: TGCAGACCTTCGCGTGATGGAGGTTGAGAAGTCCAACTTCAAGGCACCACATCTGGTGAGAGCCTTCATTCC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620494.1
CDS CAA 72 bp GTCATCGGAATGAAGGCTCTCACCAGATGTGGTGCCTaGAAGTTGGACTTCTCAACCTCCATCACGCGAAGG +
Preference number: 6 (lower is better)
Translates to: VIGMKALTRCGA*KLDFSTSITRR
Trigger: CCTTCGCGTGATGGAGGTTGAGAAGTCCAACTTCAAGGCACCACATCTGGTGAGAGCCTTCATTCCGATGAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620494.1
CDS CCA 72 bp GAAGGCTGTCATCGGAATGAAGGCTCTCACCAGATGTaGTGCCTTGAAGTTGGACTTCTCAACCTCCATCAC +
Preference number: 6 (lower is better)
Translates to: EGCHRNEGSHQM*CLEVGLLNLHH
Trigger: GTGATGGAGGTTGAGAAGTCCAACTTCAAGGCACCACATCTGGTGAGAGCCTTCATTCCGATGACAGCCTTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620494.1
CDS TCA 72 bp GTTACTGTCCGCAACTTCCCAACTCAGCTGCAGACTTaGAAACTGAAGCCCATTTTCCTGCTGCAGGTTGCA +
Preference number: 6 (lower is better)
Translates to: VTVRNFPTQLQT*KLKPIFLLQVA
Trigger: TGCAACCTGCAGCAGGAAAATGGGCTTCAGTTTTCAAGTCTGCAGCTGAGTTGGGAAGTTGCGGACAGTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000610335.4
ENST00000620494.1
CDS GCA 72 bp GACTTGAAAACTGAAGCCCATTTTCCTGCTGCAGGTTaGAGCATGAAGGCTGTCATCGGAATGAAGGCTCTC +
Preference number: 6 (lower is better)
Translates to: DLKTEAHFPAAG*SMKAVIGMKAL
Trigger: GAGAGCCTTCATTCCGATGACAGCCTTCATGCTGCAACCTGCAGCAGGAAAATGGGCTTCAGTTTTCAAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000620494.1
CDS CAA 72 bp CGCTGGAGAGTAGAGTGTGTCCATTTTGTTGCATTGTaGCCAATATTGTGTATTACTGGTTACTGTCCGCAA +
Preference number: 6 (lower is better)
Translates to: RWRVECVHFVAL*PILCITGYCPQ
Trigger: TTGCGGACAGTAACCAGTAATACACAATATTGGCAACAATGCAACAAAATGGACACACTCTACTCTCCAGCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610335.4
CDS CAA 90 bp AGCCACTTCTTCCTCTCTTCTGTTGCTGGTAAACAGCAAGGAGTTTaGCATCTTAAGGATTCTATTGTTAATTGTTCCTGTGTTAACTTG +
Preference number: 6 (lower is better)
Translates to: SHFFLSSVAGKQQGV*HLKDSIVNCSCVNL
Trigger: CAAGTTAACACAGGAACAATTAACAATAGAATCCTTAAGATGCAAAACTCCTTGCTGTTTACCAGCAACAGAAGAGAGGAAGAAGTGGCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610335.4
CDS GCA 72 bp TCCTCTCTTCTGTTGCTGGTAAACAGCAAGGAGTTTTaGATCTTAAGGATTCTATTGTTAATTGTTCCTGTG +
Preference number: 6 (lower is better)
Translates to: SSLLLLVNSKEF*ILRILLLIVPV
Trigger: CACAGGAACAATTAACAATAGAATCCTTAAGATGCAAAACTCCTTGCTGTTTACCAGCAACAGAAGAGAGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610335.4
CDS CAA 72 bp TTCCTCTCTTCTGTTGCTGGTAAACAGCAAGGAGTTTaGCATCTTAAGGATTCTATTGTTAATTGTTCCTGT +
Preference number: 6 (lower is better)
Translates to: FLSSVAGKQQGV*HLKDSIVNCSC
Trigger: ACAGGAACAATTAACAATAGAATCCTTAAGATGCAAAACTCCTTGCTGTTTACCAGCAACAGAAGAGAGGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610335.4