Pregenerated sensors for LINC02339 (Homo sapiens)

Ensembl gene IDs: ENSG00000279797

Ensembl transcript IDs: ENST00000472649.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AAGTATTCAGCCAATGGAGATGGGATACCTACAGCCATTTGGCTTTaGTTCCCTCCATGCCTCTTGGTGCTTCCATGCATACTTCCCCTG	+
Preference number: 5 (lower is better) Translates to: KYSANGDGIPTAIWL*FPPCLLVLPCILPL Trigger: CAGGGGAAGTATGCATGGAAGCACCAAGAGGCATGGAGGGAATCAAAGCCAAATGGCTGTAGGTATCCCATCTCCATTGGCTGAATACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000472649.2
CDS CCA 90 bp	ATGGGATACCTACAGCCATTTGGCTTTGATTCCCTCCATGCCTCTTaGTGCTTCCATGCATACTTCCCCTGGGATGCTCTTCTTTTGGTT	+
Preference number: 5 (lower is better) Translates to: MGYLQPFGFDSLHAS*CFHAYFPWDALLLV Trigger: AACCAAAAGAAGAGCATCCCAGGGGAAGTATGCATGGAAGCACCAAGAGGCATGGAGGGAATCAAAGCCAAATGGCTGTAGGTATCCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000472649.2
CDS CCA 72 bp	CTACAGCCATTTGGCTTTGATTCCCTCCATGCCTCTTaGTGCTTCCATGCATACTTCCCCTGGGATGCTCTT	+
Preference number: 6 (lower is better) Translates to: LQPFGFDSLHAS*CFHAYFPWDAL Trigger: AAGAGCATCCCAGGGGAAGTATGCATGGAAGCACCAAGAGGCATGGAGGGAATCAAAGCCAAATGGCTGTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000472649.2
CDS TCA 72 bp	GCCAATGGAGATGGGATACCTACAGCCATTTGGCTTTaGTTCCCTCCATGCCTCTTGGTGCTTCCATGCATA	+
Preference number: 6 (lower is better) Translates to: ANGDGIPTAIWL*FPPCLLVLPCI Trigger: TATGCATGGAAGCACCAAGAGGCATGGAGGGAATCAAAGCCAAATGGCTGTAGGTATCCCATCTCCATTGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000472649.2
CDS CAA 72 bp	AGCCAATGGAGATGGGATACCTACAGCCATTTGGCTTaGATTCCCTCCATGCCTCTTGGTGCTTCCATGCAT	+
Preference number: 6 (lower is better) Translates to: SQWRWDTYSHLA*IPSMPLGASMH Trigger: ATGCATGGAAGCACCAAGAGGCATGGAGGGAATCAAAGCCAAATGGCTGTAGGTATCCCATCTCCATTGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000472649.2
CDS CAA 72 bp	GTATTCAGCCAATGGAGATGGGATACCTACAGCCATTaGGCTTTGATTCCCTCCATGCCTCTTGGTGCTTCC	+
Preference number: 6 (lower is better) Translates to: VFSQWRWDTYSH*ALIPSMPLGAS Trigger: GGAAGCACCAAGAGGCATGGAGGGAATCAAAGCCAAATGGCTGTAGGTATCCCATCTCCATTGGCTGAATAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000472649.2
CDS CAA 90 bp	GAAGTATTCAGCCAATGGAGATGGGATACCTACAGCCATTTGGCTTaGATTCCCTCCATGCCTCTTGGTGCTTCCATGCATACTTCCCCT	+
Preference number: 6 (lower is better) Translates to: EVFSQWRWDTYSHLA*IPSMPLGASMHTSP Trigger: AGGGGAAGTATGCATGGAAGCACCAAGAGGCATGGAGGGAATCAAAGCCAAATGGCTGTAGGTATCCCATCTCCATTGGCTGAATACTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000472649.2
CDS CAA 90 bp	AGCCTCGAAGTATTCAGCCAATGGAGATGGGATACCTACAGCCATTaGGCTTTGATTCCCTCCATGCCTCTTGGTGCTTCCATGCATACT	+
Preference number: 6 (lower is better) Translates to: SLEVFSQWRWDTYSH*ALIPSMPLGASMHT Trigger: AGTATGCATGGAAGCACCAAGAGGCATGGAGGGAATCAAAGCCAAATGGCTGTAGGTATCCCATCTCCATTGGCTGAATACTTCGAGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000472649.2

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