Pregenerated sensors for LINC02336 (Homo sapiens)
Ensembl gene IDs: ENSG00000271395Ensembl transcript IDs: ENST00000434117.2, ENST00000659314.1, ENST00000670662.1
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CGACCCCACATTTCCCATCTGCACTGCCCTAGCACGGGTTCTCCATaGGGACACCACCCCTGCAGTAAACTTCTGCCTGGGCATCCAAGC | + |
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Preference number: 5 (lower is better) Translates to: RPHISHLHCPSTGSP*GHHPCSKLLPGHPS Trigger: GCTTGGATGCCCAGGCAGAAGTTTACTGCAGGGGTGGTGTCCTCATGGAGAACCCGTGCTAGGGCAGTGCAGATGGGAAATGTGGGGTCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS CCA 90 bp | CCTCTTCTAAGAGCTCCACTAGGCAGTGCCTCAGTAGAGACACTTTaGGGGCTCCGACCCCACATTTCCCATCTGCACTGCCCTAGCACG | + |
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Preference number: 5 (lower is better) Translates to: PLLRAPLGSASVETL*GLRPHISHLHCPST Trigger: CGTGCTAGGGCAGTGCAGATGGGAAATGTGGGGTCGGAGCCCCCAAAGTGTCTCTACTGAGGCACTGCCTAGTGGAGCTCTTAGAAGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS GCA 90 bp | CTAGCACGGGTTCTCCATGAGGACACCACCCCTGCAGTAAACTTCTaGCTGGGCATCCAAGCATTTTCCATACATCTTCTGAAATCTGGG | + |
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Preference number: 5 (lower is better) Translates to: LARVLHEDTTPAVNF*LGIQAFSIHLLKSG Trigger: CCCAGATTTCAGAAGATGTATGGAAAATGCTTGGATGCCCAGGCAGAAGTTTACTGCAGGGGTGGTGTCCTCATGGAGAACCCGTGCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS CCA 90 bp | TTGAAGTACAGCACACAAGCTTCATTCCATCTCCTTTACTCCCCTTaGTCAGGAACCTCATTGTGCCCAGAATTGGTTCCTTCCGGTGGG | + |
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Preference number: 5 (lower is better) Translates to: LKYSTQASFHLLYSP*SGTSLCPELVPSGG Trigger: CCCACCGGAAGGAACCAATTCTGGGCACAATGAGGTTCCTGACCAAGGGGAGTAAAGGAGATGGAATGAAGCTTGTGTGCTGTACTTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434117.2 |
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| CDS TCA 90 bp | GTCTCTAGGGAGTTCCACACTTTCCCACATTTTCCTGTCTTTTTCTaGGCCCTCCAAACTGTTTCAACCTCAGCCTGTTACCCATTTCCA | + |
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Preference number: 5 (lower is better) Translates to: VSREFHTFPHFPVFF*ALQTVSTSACYPFP Trigger: TGGAAATGGGTAACAGGCTGAGGTTGAAACAGTTTGGAGGGCTCAGAAAAAGACAGGAAAATGTGGGAAAGTGTGGAACTCCCTAGAGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS TCA 90 bp | ACCGCCTCAGCCTGGGTTTCATTGTCCATATCATATTCTGTGTTTTaGTCAAAGCCATTCTGCAAGTCTCTAGGGAGTTCCACACTTTCC | + |
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Preference number: 5 (lower is better) Translates to: TASAWVSLSISYSVF*SKPFCKSLGSSTLS Trigger: GGAAAGTGTGGAACTCCCTAGAGACTTGCAGAATGGCTTTGATCAAAACACAGAATATGATATGGACAATGAAACCCAGGCTGAGGCGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS TCA 90 bp | AGAGTCACCTTTGCTCTGGTTCCCAACAAGTTTCTCATCTACATCTaGGACCGCCTCAGCCTGGGTTTCATTGTCCATATCATATTCTGT | + |
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Preference number: 5 (lower is better) Translates to: RVTFALVPNKFLIYI*DRLSLGFIVHIIFC Trigger: ACAGAATATGATATGGACAATGAAACCCAGGCTGAGGCGGTCTCAGATGTAGATGAGAAACTTGTTGGGAACCAGAGCAAAGGTGACTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS GCA 90 bp | AAAATGCCATCAGTCGCTTTGCTAAAACATAACAAGAGTCACCTTTaGTCTGGTTCCCAACAAGTTTCTCATCTACATCTGAGACCGCCT | + |
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Preference number: 5 (lower is better) Translates to: KMPSVALLKHNKSHL*SGSQQVSHLHLRPP Trigger: AGGCGGTCTCAGATGTAGATGAGAAACTTGTTGGGAACCAGAGCAAAGGTGACTCTTGTTATGTTTTAGCAAAGCGACTGATGGCATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS CCA 90 bp | GCTGCAAAGGTGTGTCATGCTCAGAAGACATTTTCCTTATTGTCTTaGGGATTAACATGGGCTCCTCATTACTTATGCAAATTTCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: AAKVCHAQKTFSLLS*GLTWAPHYLCKFLQ Trigger: CTGCAGAAATTTGCATAAGTAATGAGGAGCCCATGTTAATCCCCAAGACAATAAGGAAAATGTCTTCTGAGCATGACACACCTTTGCAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS TCA 90 bp | TCCCTTATAAAACTGAATGCATTTAACAGCACCCAAGTCACTTCTTaGTTGCTTTGCTTCTTAGAAATTTCTTCCGCCATATACTCTAAA | + |
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Preference number: 5 (lower is better) Translates to: SLIKLNAFNSTQVTS*LLCFLEISSAIYSK Trigger: TTTAGAGTATATGGCGGAAGAAATTTCTAAGAAGCAAAGCAATCAAGAAGTGACTTGGGTGCTGTTAAATGCATTCAGTTTTATAAGGGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS GCA 72 bp | GGAGCAGCTAGGATGCAGGGCACCAAGTCCCTAGACTaGACACAGCAGAGGGACCCCAGGCCTGACCCAAAA | + |
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Preference number: 6 (lower is better) Translates to: GAARMQGTKSLD*TQQRDPRPDPK Trigger: TTTTGGGTCAGGCCTGGGGTCCCTCTGCTGTGTGCAGTCTAGGGACTTGGTGCCCTGCATCCTAGCTGCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS CCA 72 bp | AGAGCTCCACTAGGCAGTGCCTCAGTAGAGACACTTTaGGGGCTCCGACCCCACATTTCCCATCTGCACTGC | + |
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Preference number: 6 (lower is better) Translates to: RAPLGSASVETL*GLRPHISHLHC Trigger: GCAGTGCAGATGGGAAATGTGGGGTCGGAGCCCCCAAAGTGTCTCTACTGAGGCACTGCCTAGTGGAGCTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS CAA 72 bp | AAGAGCTCCACTAGGCAGTGCCTCAGTAGAGACACTTaGGGGGCTCCGACCCCACATTTCCCATCTGCACTG | + |
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Preference number: 6 (lower is better) Translates to: KSSTRQCLSRDT*GAPTPHFPSAL Trigger: CAGTGCAGATGGGAAATGTGGGGTCGGAGCCCCCAAAGTGTCTCTACTGAGGCACTGCCTAGTGGAGCTCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS CCA 72 bp | CAGTTCCACATGGCTAGGGAGGCCTCACAATCACGGTaGAAGGGAAGGAGGAGCAAGTCACATCTTACATGG | + |
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Preference number: 6 (lower is better) Translates to: QFHMAREASQSR*KGRRSKSHLTW Trigger: CCATGTAAGATGTGACTTGCTCCTCCTTCCCTTCCACCGTGATTGTGAGGCCTCCCTAGCCATGTGGAACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS GCA 72 bp | CATCTCCTTTACTCCCCTTGGTCAGGAACCTCATTGTaGCCAGAATTGGTTCCTTCCGGTGGGTTCTTTGTC | + |
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Preference number: 6 (lower is better) Translates to: HLLYSPWSGTSL*PELVPSGGFFV Trigger: GACAAAGAACCCACCGGAAGGAACCAATTCTGGGCACAATGAGGTTCCTGACCAAGGGGAGTAAAGGAGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434117.2 |
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| CDS CAA 90 bp | CTTGAAGTACAGCACACAAGCTTCATTCCATCTCCTTTACTCCCCTaGGTCAGGAACCTCATTGTGCCCAGAATTGGTTCCTTCCGGTGG | + |
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Preference number: 6 (lower is better) Translates to: LEVQHTSFIPSPLLP*VRNLIVPRIGSFRW Trigger: CCACCGGAAGGAACCAATTCTGGGCACAATGAGGTTCCTGACCAAGGGGAGTAAAGGAGATGGAATGAAGCTTGTGTGCTGTACTTCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434117.2 |
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| CDS GCA 72 bp | GTTCTCCATGAGGACACCACCCCTGCAGTAAACTTCTaGCTGGGCATCCAAGCATTTTCCATACATCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: VLHEDTTPAVNF*LGIQAFSIHLL Trigger: CAGAAGATGTATGGAAAATGCTTGGATGCCCAGGCAGAAGTTTACTGCAGGGGTGGTGTCCTCATGGAGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS CAA 72 bp | TTCCATCTCCTTTACTCCCCTTGGTCAGGAACCTCATaGTGCCCAGAATTGGTTCCTTCCGGTGGGTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: FHLLYSPWSGTS*CPELVPSGGFF Trigger: AAAGAACCCACCGGAAGGAACCAATTCTGGGCACAATGAGGTTCCTGACCAAGGGGAGTAAAGGAGATGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434117.2 |
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| CDS CAA 72 bp | CAGCACACAAGCTTCATTCCATCTCCTTTACTCCCCTaGGTCAGGAACCTCATTGTGCCCAGAATTGGTTCC | + |
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Preference number: 6 (lower is better) Translates to: QHTSFIPSPLLP*VRNLIVPRIGS Trigger: GGAACCAATTCTGGGCACAATGAGGTTCCTGACCAAGGGGAGTAAAGGAGATGGAATGAAGCTTGTGTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434117.2 |
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| CDS CCA 72 bp | AGCACACAAGCTTCATTCCATCTCCTTTACTCCCCTTaGTCAGGAACCTCATTGTGCCCAGAATTGGTTCCT | + |
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Preference number: 6 (lower is better) Translates to: STQASFHLLYSP*SGTSLCPELVP Trigger: AGGAACCAATTCTGGGCACAATGAGGTTCCTGACCAAGGGGAGTAAAGGAGATGGAATGAAGCTTGTGTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434117.2 |
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| CDS TCA 72 bp | TTTGCTCTGGTTCCCAACAAGTTTCTCATCTACATCTaGGACCGCCTCAGCCTGGGTTTCATTGTCCATATC | + |
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Preference number: 6 (lower is better) Translates to: FALVPNKFLIYI*DRLSLGFIVHI Trigger: GATATGGACAATGAAACCCAGGCTGAGGCGGTCTCAGATGTAGATGAGAAACTTGTTGGGAACCAGAGCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS TCA 72 bp | TCTGCCTGGGCATCCAAGCATTTTCCATACATCTTCTaGAATCTGGGTGGAGGTTCATTCTTGACTTCTGTC | + |
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Preference number: 6 (lower is better) Translates to: SAWASKHFPYIF*NLGGGSFLTSV Trigger: GACAGAAGTCAAGAATGAACCTCCACCCAGATTTCAGAAGATGTATGGAAAATGCTTGGATGCCCAGGCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS CAA 90 bp | ATAGATAGCGCTTTATGTGCAGGAAAATGGTACTGGATGCATGACTaGAAGTACAGCACACAAGCTTCATTCCATCTCCTTTACTCCCCT | + |
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Preference number: 6 (lower is better) Translates to: IDSALCAGKWYWMHD*KYSTQASFHLLYSP Trigger: AGGGGAGTAAAGGAGATGGAATGAAGCTTGTGTGCTGTACTTCAAGTCATGCATCCAGTACCATTTTCCTGCACATAAAGCGCTATCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000434117.2 ENST00000670662.1 |
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| CDS TCA 72 bp | GCCTGGGTTTCATTGTCCATATCATATTCTGTGTTTTaGTCAAAGCCATTCTGCAAGTCTCTAGGGAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: AWVSLSISYSVF*SKPFCKSLGSS Trigger: GGAACTCCCTAGAGACTTGCAGAATGGCTTTGATCAAAACACAGAATATGATATGGACAATGAAACCCAGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS CAA 72 bp | GGTGTGTCATGCTCAGAAGACATTTTCCTTATTGTCTaGGGGATTAACATGGGCTCCTCATTACTTATGCAA | + |
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Preference number: 6 (lower is better) Translates to: GVSCSEDIFLIV*GINMGSSLLMQ Trigger: TTGCATAAGTAATGAGGAGCCCATGTTAATCCCCAAGACAATAAGGAAAATGTCTTCTGAGCATGACACACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS CAA 72 bp | GCAAAGGTGTGTCATGCTCAGAAGACATTTTCCTTATaGTCTTGGGGATTAACATGGGCTCCTCATTACTTA | + |
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Preference number: 6 (lower is better) Translates to: AKVCHAQKTFSL*SWGLTWAPHYL Trigger: TAAGTAATGAGGAGCCCATGTTAATCCCCAAGACAATAAGGAAAATGTCTTCTGAGCATGACACACCTTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS CAA 90 bp | TGCTGCAAAGGTGTGTCATGCTCAGAAGACATTTTCCTTATTGTCTaGGGGATTAACATGGGCTCCTCATTACTTATGCAAATTTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: CCKGVSCSEDIFLIV*GINMGSSLLMQISA Trigger: TGCAGAAATTTGCATAAGTAATGAGGAGCCCATGTTAATCCCCAAGACAATAAGGAAAATGTCTTCTGAGCATGACACACCTTTGCAGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS CCA 72 bp | CAGAAGACATTTTCCTTATTGTCTTGGGGATTAACATaGGCTCCTCATTACTTATGCAAATTTCTGCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: QKTFSLLSWGLT*APHYLCKFLQP Trigger: TGGCTGCAGAAATTTGCATAAGTAATGAGGAGCCCATGTTAATCCCCAAGACAATAAGGAAAATGTCTTCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS CCA 72 bp | GTGTGTCATGCTCAGAAGACATTTTCCTTATTGTCTTaGGGATTAACATGGGCTCCTCATTACTTATGCAAA | + |
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Preference number: 6 (lower is better) Translates to: VCHAQKTFSLLS*GLTWAPHYLCK Trigger: TTTGCATAAGTAATGAGGAGCCCATGTTAATCCCCAAGACAATAAGGAAAATGTCTTCTGAGCATGACACAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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| CDS CAA 72 bp | GGCTCCTCATTACTTATGCAAATTTCTGCAGCCAGCTaGTATTTCTCCTCAGAAAATGGGATTTCCTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: GSSLLMQISAAS*YFSSENGISFS Trigger: AGAAAAGGAAATCCCATTTTCTGAGGAGAAATACAAGCTGGCTGCAGAAATTTGCATAAGTAATGAGGAGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659314.1 |
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