Pregenerated sensors for LINC02335 (Homo sapiens)
Ensembl gene IDs: ENSG00000278630Ensembl transcript IDs: ENST00000616578.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTGGAACCCTCGCAGGGAAGGGTAAACTGGTCACCCAGGGCTGCTTaGTTGACTGTAGCAGATCTCATCAATCATGCCAACATATGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LEPSQGRVNWSPRAA*LTVADLINHANICS Trigger: GCTGCATATGTTGGCATGATTGATGAGATCTGCTACAGTCAAGCAAGCAGCCCTGGGTGACCAGTTTACCCTTCCCTGCGAGGGTTCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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| CDS GCA 90 bp | GCAGCTGGAACCCTCGCAGGGAAGGGTAAACTGGTCACCCAGGGCTaGTTGCTTGACTGTAGCAGATCTCATCAATCATGCCAACATATG | + |
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Preference number: 5 (lower is better) Translates to: AAGTLAGKGKLVTQG*LLDCSRSHQSCQHM Trigger: CATATGTTGGCATGATTGATGAGATCTGCTACAGTCAAGCAAGCAGCCCTGGGTGACCAGTTTACCCTTCCCTGCGAGGGTTCCAGCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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| CDS TCA 90 bp | GGCAGATGCTCACCTGTACTCCTACAGTGTACAATCTTGGCTGGATaGCAAGGTGAGGAGAAGGAGAAGCTGTCACAGAATGGGGGCAAC | + |
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Preference number: 5 (lower is better) Translates to: GRCSPVLLQCTILAG*QGEEKEKLSQNGGN Trigger: GTTGCCCCCATTCTGTGACAGCTTCTCCTTCTCCTCACCTTGTCATCCAGCCAAGATTGTACACTGTAGGAGTACAGGTGAGCATCTGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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| CDS TCA 90 bp | GCTTTGAAGCACCCCTGGCAGTTGATAATGGAGGGCTGTTGGCAATaGTTATGGAGGCAGATGCTCACCTGTACTCCTACAGTGTACAAT | + |
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Preference number: 5 (lower is better) Translates to: ALKHPWQLIMEGCWQ*LWRQMLTCTPTVYN Trigger: ATTGTACACTGTAGGAGTACAGGTGAGCATCTGCCTCCATAATCATTGCCAACAGCCCTCCATTATCAACTGCCAGGGGTGCTTCAAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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| CDS CCA 90 bp | ATTATGGAGGCAGATGCTCACCTGTACTCCTACAGTGTACAATCTTaGCTGGATGACAAGGTGAGGAGAAGGAGAAGCTGTCACAGAATG | + |
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Preference number: 5 (lower is better) Translates to: IMEADAHLYSYSVQS*LDDKVRRRRSCHRM Trigger: CATTCTGTGACAGCTTCTCCTTCTCCTCACCTTGTCATCCAGCCAAGATTGTACACTGTAGGAGTACAGGTGAGCATCTGCCTCCATAAT 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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| CDS CCA 90 bp | TCCCTAGTCAGCAAAGGCAGAGTTTGTTTCAGGCATAAATACACTTaGTCCCTGTGTCAAGAGAAAGAACTCCACATTGCTTTGAAGCAC | + |
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Preference number: 5 (lower is better) Translates to: SLVSKGRVCFRHKYT*SLCQEKELHIALKH Trigger: GTGCTTCAAAGCAATGTGGAGTTCTTTCTCTTGACACAGGGACCAAGTGTATTTATGCCTGAAACAAACTCTGCCTTTGCTGACTAGGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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| CDS CCA 72 bp | GAGGAGAAGGAGAAGCTGTCACAGAATGGGGGCAACTaGCAGCTGGAACCCTCGCAGGGAAGGGTAAACTGG | + |
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Preference number: 6 (lower is better) Translates to: EEKEKLSQNGGN*QLEPSQGRVNW Trigger: CCAGTTTACCCTTCCCTGCGAGGGTTCCAGCTGCCAGTTGCCCCCATTCTGTGACAGCTTCTCCTTCTCCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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| CDS CAA 90 bp | GAACCCTCGCAGGGAAGGGTAAACTGGTCACCCAGGGCTGCTTGCTaGACTGTAGCAGATCTCATCAATCATGCCAACATATGCAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: EPSQGRVNWSPRAAC*TVADLINHANICSC Trigger: GCAGCTGCATATGTTGGCATGATTGATGAGATCTGCTACAGTCAAGCAAGCAGCCCTGGGTGACCAGTTTACCCTTCCCTGCGAGGGTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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| CDS CAA 90 bp | GCTGGAACCCTCGCAGGGAAGGGTAAACTGGTCACCCAGGGCTGCTaGCTTGACTGTAGCAGATCTCATCAATCATGCCAACATATGCAG | + |
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Preference number: 6 (lower is better) Translates to: AGTLAGKGKLVTQGC*LDCSRSHQSCQHMQ Trigger: CTGCATATGTTGGCATGATTGATGAGATCTGCTACAGTCAAGCAAGCAGCCCTGGGTGACCAGTTTACCCTTCCCTGCGAGGGTTCCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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| CDS TCA 72 bp | CACCCCTGGCAGTTGATAATGGAGGGCTGTTGGCAATaGTTATGGAGGCAGATGCTCACCTGTACTCCTACA | + |
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Preference number: 6 (lower is better) Translates to: HPWQLIMEGCWQ*LWRQMLTCTPT Trigger: TGTAGGAGTACAGGTGAGCATCTGCCTCCATAATCATTGCCAACAGCCCTCCATTATCAACTGCCAGGGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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| CDS CAA 90 bp | CCACATTGCTTTGAAGCACCCCTGGCAGTTGATAATGGAGGGCTGTaGGCAATGATTATGGAGGCAGATGCTCACCTGTACTCCTACAGT | + |
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Preference number: 6 (lower is better) Translates to: PHCFEAPLAVDNGGL*AMIMEADAHLYSYS Trigger: ACTGTAGGAGTACAGGTGAGCATCTGCCTCCATAATCATTGCCAACAGCCCTCCATTATCAACTGCCAGGGGTGCTTCAAAGCAATGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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| CDS GCA 72 bp | CACTTGGTCCCTGTGTCAAGAGAAAGAACTCCACATTaGTTTGAAGCACCCCTGGCAGTTGATAATGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: HLVPVSRERTPH*FEAPLAVDNGG Trigger: CCCTCCATTATCAACTGCCAGGGGTGCTTCAAAGCAATGTGGAGTTCTTTCTCTTGACACAGGGACCAAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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| CDS CCA 72 bp | GCAGATGCTCACCTGTACTCCTACAGTGTACAATCTTaGCTGGATGACAAGGTGAGGAGAAGGAGAAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: ADAHLYSYSVQS*LDDKVRRRRSC Trigger: ACAGCTTCTCCTTCTCCTCACCTTGTCATCCAGCCAAGATTGTACACTGTAGGAGTACAGGTGAGCATCTGC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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| CDS CAA 72 bp | TTTGAAGCACCCCTGGCAGTTGATAATGGAGGGCTGTaGGCAATGATTATGGAGGCAGATGCTCACCTGTAC | + |
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Preference number: 6 (lower is better) Translates to: FEAPLAVDNGGL*AMIMEADAHLY Trigger: GTACAGGTGAGCATCTGCCTCCATAATCATTGCCAACAGCCCTCCATTATCAACTGCCAGGGGTGCTTCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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| CDS CAA 72 bp | TGGTCCCTGTGTCAAGAGAAAGAACTCCACATTGCTTaGAAGCACCCCTGGCAGTTGATAATGGAGGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: WSLCQEKELHIA*KHPWQLIMEGC Trigger: ACAGCCCTCCATTATCAACTGCCAGGGGTGCTTCAAAGCAATGTGGAGTTCTTTCTCTTGACACAGGGACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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| CDS CCA 72 bp | AGCAAAGGCAGAGTTTGTTTCAGGCATAAATACACTTaGTCCCTGTGTCAAGAGAAAGAACTCCACATTGCT | + |
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Preference number: 6 (lower is better) Translates to: SKGRVCFRHKYT*SLCQEKELHIA Trigger: AGCAATGTGGAGTTCTTTCTCTTGACACAGGGACCAAGTGTATTTATGCCTGAAACAAACTCTGCCTTTGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000616578.1 |
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