Pregenerated sensors for LINC02313 (Homo sapiens)
Ensembl gene IDs: ENSG00000258474Ensembl transcript IDs: ENST00000553330.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGACTGAACAACAATTTTCTGGTGGCAGGTGCATCCATGAGGAGCTaGAGTCGGTCCCAGCAGCATATGCTTTCTCCTCTGGGAGGGCAA | + |
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Preference number: 5 (lower is better) Translates to: RLNNNFLVAGASMRS*SRSQQHMLSPLGGQ Trigger: TTGCCCTCCCAGAGGAGAAAGCATATGCTGCTGGGACCGACTGCAGCTCCTCATGGATGCACCTGCCACCAGAAAATTGTTGTTCAGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553330.1 |
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| CDS GCA 90 bp | AAGAGAAAGCAATCCCAGACTGAACAACAATTTTCTGGTGGCAGGTaGATCCATGAGGAGCTGCAGTCGGTCCCAGCAGCATATGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: KRKQSQTEQQFSGGR*IHEELQSVPAAYAF Trigger: GAAAGCATATGCTGCTGGGACCGACTGCAGCTCCTCATGGATGCACCTGCCACCAGAAAATTGTTGTTCAGTCTGGGATTGCTTTCTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553330.1 |
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| CDS CCA 90 bp | ACTCAGATTGATTTTCCATTCCTTGTGCAGCACCTGCAGTGCTGTTaGTTTATAAAAGCACGAAATCTTCTGTCCCAGAGGCTGGACTGG | + |
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Preference number: 5 (lower is better) Translates to: TQIDFPFLVQHLQCC*FIKARNLLSQRLDW Trigger: CCAGTCCAGCCTCTGGGACAGAAGATTTCGTGCTTTTATAAACCAACAGCACTGCAGGTGCTGCACAAGGAATGGAAAATCAATCTGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000553330.1 |
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| CDS TCA 90 bp | ATCAATGTAGAGATCAGATCAGCCAATGACAGTGAGACAATGGAATaGAAACTTGGCAGGTCAGTGAAAGGCCTGGATTCAGACAGGGAA | + |
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Preference number: 5 (lower is better) Translates to: INVEIRSANDSETME*KLGRSVKGLDSDRE Trigger: TTCCCTGTCTGAATCCAGGCCTTTCACTGACCTGCCAAGTTTTCATTCCATTGTCTCACTGTCATTGGCTGATCTGATCTCTACATTGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553330.1 |
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| CDS CCA 90 bp | TTCCCCATGGAAGAAATTCCTATTGCTCAGGAAAAGACACTGAGCTaGGTGACAAATCCACTGTCATCAGCAATCTTCTTCAGGGAGTAT | + |
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Preference number: 5 (lower is better) Translates to: FPMEEIPIAQEKTLS*VTNPLSSAIFFREY Trigger: ATACTCCCTGAAGAAGATTGCTGATGACAGTGGATTTGTCACCCAGCTCAGTGTCTTTTCCTGAGCAATAGGAATTTCTTCCATGGGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000553330.1 |
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| CDS CCA 72 bp | GCTGCAGTCGGTCCCAGCAGCATATGCTTTCTCCTCTaGGAGGGCAACTCGGAGACGTGCAGACTAACGGGA | + |
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Preference number: 6 (lower is better) Translates to: AAVGPSSICFLL*EGNSETCRLTG Trigger: TCCCGTTAGTCTGCACGTCTCCGAGTTGCCCTCCCAGAGGAGAAAGCATATGCTGCTGGGACCGACTGCAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553330.1 |
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| CDS GCA 72 bp | ATATGCTTTCTCCTCTGGGAGGGCAACTCGGAGACGTaGAGACTAACGGGACCACTGGCTGCAAGCCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: ICFLLWEGNSET*RLTGPLAASLR Trigger: TCTGAGGCTTGCAGCCAGTGGTCCCGTTAGTCTGCACGTCTCCGAGTTGCCCTCCCAGAGGAGAAAGCATAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553330.1 |
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| CDS GCA 72 bp | CAATCCCAGACTGAACAACAATTTTCTGGTGGCAGGTaGATCCATGAGGAGCTGCAGTCGGTCCCAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: QSQTEQQFSGGR*IHEELQSVPAA Trigger: TGCTGCTGGGACCGACTGCAGCTCCTCATGGATGCACCTGCCACCAGAAAATTGTTGTTCAGTCTGGGATTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553330.1 |
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| CDS GCA 72 bp | AACAATTTTCTGGTGGCAGGTGCATCCATGAGGAGCTaGAGTCGGTCCCAGCAGCATATGCTTTCTCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: NNFLVAGASMRS*SRSQQHMLSPL Trigger: CAGAGGAGAAAGCATATGCTGCTGGGACCGACTGCAGCTCCTCATGGATGCACCTGCCACCAGAAAATTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553330.1 |
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| CDS TCA 72 bp | GAGATCAGATCAGCCAATGACAGTGAGACAATGGAATaGAAACTTGGCAGGTCAGTGAAAGGCCTGGATTCA | + |
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Preference number: 6 (lower is better) Translates to: EIRSANDSETME*KLGRSVKGLDS Trigger: TGAATCCAGGCCTTTCACTGACCTGCCAAGTTTTCATTCCATTGTCTCACTGTCATTGGCTGATCTGATCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553330.1 |
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| CDS CAA 72 bp | TCTTCTTCAGGGAGTATGCTCTTAATGACACTCAGATaGATTTTCCATTCCTTGTGCAGCACCTGCAGTGCT | + |
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Preference number: 6 (lower is better) Translates to: SSSGSMLLMTLR*IFHSLCSTCSA Trigger: AGCACTGCAGGTGCTGCACAAGGAATGGAAAATCAATCTGAGTGTCATTAAGAGCATACTCCCTGAAGAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553330.1 |
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| CDS CCA 72 bp | GAAGAAATTCCTATTGCTCAGGAAAAGACACTGAGCTaGGTGACAAATCCACTGTCATCAGCAATCTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: EEIPIAQEKTLS*VTNPLSSAIFF Trigger: GAAGAAGATTGCTGATGACAGTGGATTTGTCACCCAGCTCAGTGTCTTTTCCTGAGCAATAGGAATTTCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553330.1 |
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