Pregenerated sensors for LINC02311 (Homo sapiens)
Ensembl gene IDs: ENSG00000258718Ensembl transcript IDs: ENST00000556144.2, ENST00000556819.1, ENST00000648079.1, ENST00000663755.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGCCATCTTCTCTTTGCTCTTGATGTTTTGCCAGAGGCGCTCAGTTaGTCTTCCATGATCTCGTCTCTGTACACAGTTGGTCCTCCAACT | + |
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Preference number: 5 (lower is better) Translates to: GHLLFALDVLPEALS*SSMISSLYTVGPPT Trigger: AGTTGGAGGACCAACTGTGTACAGAGACGAGATCATGGAAGATCAACTGAGCGCCTCTGGCAAAACATCAAGAGCAAAGAGAAGATGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000556144.2 ENST00000663755.1 |
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| CDS GCA 90 bp | AAGCACTGTATGATGGACAGTGACTTCCTCTCAGACATCTTAATCTaGTGGTACTTTGACCTTGAACTTCCCAGCCTCCACGACTGTGAG | + |
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Preference number: 5 (lower is better) Translates to: KHCMMDSDFLSDILI*WYFDLELPSLHDCE Trigger: CTCACAGTCGTGGAGGCTGGGAAGTTCAAGGTCAAAGTACCAGCAGATTAAGATGTCTGAGAGGAAGTCACTGTCCATCATACAGTGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648079.1 |
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| CDS CCA 90 bp | CACTGTATGATGGACAGTGACTTCCTCTCAGACATCTTAATCTGCTaGTACTTTGACCTTGAACTTCCCAGCCTCCACGACTGTGAGATT | + |
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Preference number: 5 (lower is better) Translates to: HCMMDSDFLSDILIC*YFDLELPSLHDCEI Trigger: AATCTCACAGTCGTGGAGGCTGGGAAGTTCAAGGTCAAAGTACCAGCAGATTAAGATGTCTGAGAGGAAGTCACTGTCCATCATACAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648079.1 |
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| CDS TCA 90 bp | GCCACATCACTGTCAACTATTGAATATACTCTTGACCTGAGACCATaGTGCATGTTAAATGCTCTTTGGTGTGGCCAGAGGGAGAGGAAT | + |
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Preference number: 5 (lower is better) Translates to: ATSLSTIEYTLDLRP*CMLNALWCGQRERN Trigger: ATTCCTCTCCCTCTGGCCACACCAAAGAGCATTTAACATGCATCATGGTCTCAGGTCAAGAGTATATTCAATAGTTGACAGTGATGTGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000556144.2 ENST00000663755.1 |
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| CDS CCA 90 bp | AGTCATCTCTACTCCAGTCAGCATTACCTAAGACAGCTTGAAGGCTaGAGGCTAGAATTATCTGAAGGCTTGTTCACTCTTACACTTGGT | + |
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Preference number: 5 (lower is better) Translates to: SHLYSSQHYLRQLEG*RLELSEGLFTLTLG Trigger: ACCAAGTGTAAGAGTGAACAAGCCTTCAGATAATTCTAGCCTCCAGCCTTCAAGCTGTCTTAGGTAATGCTGACTGGAGTAGAGATGACT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000556819.1 ENST00000648079.1 |
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| CDS TCA 90 bp | AATTTAATTGCTTTGGCTTATGATGGGCCATCTTCTCTTTGCTCTTaGTGTTTTGCCAGAGGCGCTCAGTTGATCTTCCATGATCTCGTC | + |
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Preference number: 5 (lower is better) Translates to: NLIALAYDGPSSLCS*CFARGAQLIFHDLV Trigger: GACGAGATCATGGAAGATCAACTGAGCGCCTCTGGCAAAACATCAAGAGCAAAGAGAAGATGGCCCATCATAAGCCAAAGCAATTAAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000556144.2 ENST00000663755.1 |
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| CDS CCA 90 bp | CTAAATGTCACGTTTTTATGTGTTCTGAGCGTCCTTACAACATGGTaGCTGGGTTCCCAGAAGAGGCATCTCAAATTAAAGCACTGTATG | + |
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Preference number: 5 (lower is better) Translates to: LNVTFLCVLSVLTTW*LGSQKRHLKLKHCM Trigger: CATACAGTGCTTTAATTTGAGATGCCTCTTCTGGGAACCCAGCCACCATGTTGTAAGGACGCTCAGAACACATAAAAACGTGACATTTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000556819.1 |
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| CDS CCA 90 bp | TATCTAAATGTCACGTTTTTATGTGTTCTGAGCGTCCTTACAACATaGTGGCTGGGTTCCCAGAAGAGGCATCTCAAATTAAAGCACTGT | + |
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Preference number: 5 (lower is better) Translates to: YLNVTFLCVLSVLTT*WLGSQKRHLKLKHC Trigger: ACAGTGCTTTAATTTGAGATGCCTCTTCTGGGAACCCAGCCACCATGTTGTAAGGACGCTCAGAACACATAAAAACGTGACATTTAGATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000556819.1 |
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| CDS GCA 90 bp | ATTGGAGATAGTTTCAAGGCACTCAAAATGTATTTCCTGAATGAATaGACCAGTGAAGGGATTAATGGGTTCTACTCAGTTGCTGTTGAA | + |
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Preference number: 5 (lower is better) Translates to: IGDSFKALKMYFLNE*TSEGINGFYSVAVE Trigger: TTCAACAGCAACTGAGTAGAACCCATTAATCCCTTCACTGGTGCATTCATTCAGGAAATACATTTTGAGTGCCTTGAAACTATCTCCAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663755.1 |
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| CDS TCA 72 bp | GCTTTGGCTTATGATGGGCCATCTTCTCTTTGCTCTTaGTGTTTTGCCAGAGGCGCTCAGTTGATCTTCCAT | + |
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Preference number: 6 (lower is better) Translates to: ALAYDGPSSLCS*CFARGAQLIFH Trigger: ATGGAAGATCAACTGAGCGCCTCTGGCAAAACATCAAGAGCAAAGAGAAGATGGCCCATCATAAGCCAAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000556144.2 ENST00000663755.1 |
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| CDS GCA 72 bp | ATGATGGACAGTGACTTCCTCTCAGACATCTTAATCTaGTGGTACTTTGACCTTGAACTTCCCAGCCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: MMDSDFLSDILI*WYFDLELPSLH Trigger: GTGGAGGCTGGGAAGTTCAAGGTCAAAGTACCAGCAGATTAAGATGTCTGAGAGGAAGTCACTGTCCATCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648079.1 |
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| CDS CCA 72 bp | ACGTTTTTATGTGTTCTGAGCGTCCTTACAACATGGTaGCTGGGTTCCCAGAAGAGGCATCTCAAATTAAAG | + |
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Preference number: 6 (lower is better) Translates to: TFLCVLSVLTTW*LGSQKRHLKLK Trigger: CTTTAATTTGAGATGCCTCTTCTGGGAACCCAGCCACCATGTTGTAAGGACGCTCAGAACACATAAAAACGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000556819.1 |
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| CDS CCA 72 bp | TACTCCAGTCAGCATTACCTAAGACAGCTTGAAGGCTaGAGGCTAGAATTATCTGAAGGCTTGTTCACTCTT | + |
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Preference number: 6 (lower is better) Translates to: YSSQHYLRQLEG*RLELSEGLFTL Trigger: AAGAGTGAACAAGCCTTCAGATAATTCTAGCCTCCAGCCTTCAAGCTGTCTTAGGTAATGCTGACTGGAGTA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000556819.1 ENST00000648079.1 |
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| CDS TCA 72 bp | CTGTCAACTATTGAATATACTCTTGACCTGAGACCATaGTGCATGTTAAATGCTCTTTGGTGTGGCCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: LSTIEYTLDLRP*CMLNALWCGQR Trigger: CCTCTGGCCACACCAAAGAGCATTTAACATGCATCATGGTCTCAGGTCAAGAGTATATTCAATAGTTGACAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000556144.2 ENST00000663755.1 |
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| CDS GCA 72 bp | TTTGTGGCTTATAATATTAACAGCACATACTTTGCCTaGAAATCTGCAATTTGGGCAGGAACCTGTGAGGAC | + |
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Preference number: 6 (lower is better) Translates to: FVAYNINSTYFA*KSAIWAGTCED Trigger: GTCCTCACAGGTTCCTGCCCAAATTGCAGATTTGCAGGCAAAGTATGTGCTGTTAATATTATAAGCCACAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000556819.1 ENST00000648079.1 |
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| CDS CCA 72 bp | TGGGTTCCCAGAAGAGGCATCATATTCTTAGATGAGTaGTTCAAAATGCTTTCTCCCTTAGTTTTGCATTTT | + |
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Preference number: 6 (lower is better) Translates to: WVPRRGIIFLDE*FKMLSPLVLHF Trigger: AAAATGCAAAACTAAGGGAGAAAGCATTTTGAACCACTCATCTAAGAATATGATGCCTCTTCTGGGAACCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000648079.1 |
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| CDS CAA 72 bp | AATGCACCAGTGAAGGGATTAATGGGTTCTACTCAGTaGCTGTTGAATAAAGAGGACCTAGCAATATACATT | + |
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Preference number: 6 (lower is better) Translates to: NAPVKGLMGSTQ*LLNKEDLAIYI Trigger: AATGTATATTGCTAGGTCCTCTTTATTCAACAGCAACTGAGTAGAACCCATTAATCCCTTCACTGGTGCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663755.1 |
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| CDS CAA 72 bp | AAAATTTTGTGGCTTATAATATTAACAGCACATACTTaGCCTGCAAATCTGCAATTTGGGCAGGAACCTGTG | + |
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Preference number: 6 (lower is better) Translates to: KILWLIILTAHT*PANLQFGQEPV Trigger: CACAGGTTCCTGCCCAAATTGCAGATTTGCAGGCAAAGTATGTGCTGTTAATATTATAAGCCACAAAATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000556819.1 ENST00000648079.1 |
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| CDS CAA 72 bp | CAGCATTTATCAAATAGGGTATTCTTTTCCCATTGCTaGTGTTTGTCAGGTTTGTCAAAGATCAGATGGTTG | + |
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Preference number: 6 (lower is better) Translates to: QHLSNRVFFSHC*CLSGLSKIRWL Trigger: CAACCATCTGATCTTTGACAAACCTGACAAACACAAGCAATGGGAAAAGAATACCCTATTTGATAAATGCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000663755.1 |
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