Pregenerated sensors for LINC02308 (Homo sapiens)
Ensembl gene IDs: ENSG00000258675Ensembl transcript IDs: ENST00000555001.2, ENST00000656095.1, ENST00000657354.1, ENST00000668972.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTGTGCTGGGTGACCTCATCGCTCTGGCTCTGCCTCAGGCCAAGCTaGGATCTGAAAAGCCCTCCTCCCAAGTCGGGGCTCTCCTTGTGT | + |
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Preference number: 5 (lower is better) Translates to: LCWVTSSLWLCLRPS*DLKSPPPKSGLSLC Trigger: ACACAAGGAGAGCCCCGACTTGGGAGGAGGGCTTTTCAGATCGCAGCTTGGCCTGAGGCAGAGCCAGAGCGATGAGGTCACCCAGCACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000555001.2 ENST00000656095.1 ENST00000657354.1 ENST00000668972.1 |
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| CDS TCA 90 bp | GGTCTGGGGTGCAGCTCTGGCACAGCATTTCTAAAGCCCTCCCGTTaGAGGAATATGCAGCCAGGGCTGAGACCACGGTTCTGGAGGGAG | + |
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Preference number: 5 (lower is better) Translates to: GLGCSSGTAFLKPSR*RNMQPGLRPRFWRE Trigger: CTCCCTCCAGAACCGTGGTCTCAGCCCTGGCTGCATATTCCTTCAACGGGAGGGCTTTAGAAATGCTGTGCCAGAGCTGCACCCCAGACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000555001.2 ENST00000657354.1 ENST00000668972.1 |
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| CDS CCA 90 bp | CATTACCCTGAGCTCCCCTTTCCCAACCACAGGGACATCCATGGCTaGGCTTCAAGGACGCCCTTGAAGAGGCCTCTCCCAGAAAACTCC | + |
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Preference number: 5 (lower is better) Translates to: HYPELPFPNHRDIHG*ASRTPLKRPLPENS Trigger: GGAGTTTTCTGGGAGAGGCCTCTTCAAGGGCGTCCTTGAAGCCCAGCCATGGATGTCCCTGTGGTTGGGAAAGGGGAGCTCAGGGTAATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000555001.2 ENST00000657354.1 ENST00000668972.1 |
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| CDS TCA 90 bp | GGGCTGAGACCACGGTTCTGGAGGGAGGTAATATCTGCAGGTTCTTaGGGATACTCCATTACCCTGAGCTCCCCTTTCCCAACCACAGGG | + |
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Preference number: 5 (lower is better) Translates to: GLRPRFWREVISAGS*GYSITLSSPFPTTG Trigger: CCCTGTGGTTGGGAAAGGGGAGCTCAGGGTAATGGAGTATCCTCAAGAACCTGCAGATATTACCTCCCTCCAGAACCGTGGTCTCAGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000555001.2 ENST00000657354.1 ENST00000668972.1 |
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| CDS TCA 90 bp | GGTCTGGGGTGCAGCTCTGGCACAGCATTTCTAAAGCCCTCCCGTTaGAGGAATATGCAGCCAGGGCTGAGACCACGGTTCTGTTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: GLGCSSGTAFLKPSR*RNMQPGLRPRFCFL Trigger: AAGGAAACAGAACCGTGGTCTCAGCCCTGGCTGCATATTCCTTCAACGGGAGGGCTTTAGAAATGCTGTGCCAGAGCTGCACCCCAGACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656095.1 |
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| CDS GCA 90 bp | TATGCAGCCAGGGCTGAGACCACGGTTCTGGAGGGAGGTAATATCTaGAGGTTCTTGAGGATACTCCATTACCCTGAGCTCCCCTTTCCC | + |
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Preference number: 5 (lower is better) Translates to: YAARAETTVLEGGNI*RFLRILHYPELPFP Trigger: GGGAAAGGGGAGCTCAGGGTAATGGAGTATCCTCAAGAACCTGCAGATATTACCTCCCTCCAGAACCGTGGTCTCAGCCCTGGCTGCATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000555001.2 ENST00000657354.1 ENST00000668972.1 |
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| CDS TCA 90 bp | GAAAGCTTTCCACATACTGATGCCTTGGCCGCATCCTGGAGAGTCTaGTTTTGTTGGTCTGGGGTGCAGCTCTGGCACAGCATTTCTAAA | + |
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Preference number: 5 (lower is better) Translates to: ESFPHTDALAASWRV*FCWSGVQLWHSISK Trigger: TTTAGAAATGCTGTGCCAGAGCTGCACCCCAGACCAACAAAATCAGACTCTCCAGGATGCGGCCAAGGCATCAGTATGTGGAAAGCTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000555001.2 ENST00000656095.1 ENST00000657354.1 ENST00000668972.1 |
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| CDS CCA 72 bp | GAGCTCCCCTTTCCCAACCACAGGGACATCCATGGCTaGGCTTCAAGGACGCCCTTGAAGAGGCCTCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: ELPFPNHRDIHG*ASRTPLKRPLP Trigger: TGGGAGAGGCCTCTTCAAGGGCGTCCTTGAAGCCCAGCCATGGATGTCCCTGTGGTTGGGAAAGGGGAGCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000555001.2 ENST00000657354.1 ENST00000668972.1 |
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| CDS CAA 90 bp | TGGTCTGGGGTGCAGCTCTGGCACAGCATTTCTAAAGCCCTCCCGTaGAAGGAATATGCAGCCAGGGCTGAGACCACGGTTCTGGAGGGA | + |
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Preference number: 6 (lower is better) Translates to: WSGVQLWHSISKALP*KEYAARAETTVLEG Trigger: TCCCTCCAGAACCGTGGTCTCAGCCCTGGCTGCATATTCCTTCAACGGGAGGGCTTTAGAAATGCTGTGCCAGAGCTGCACCCCAGACCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000555001.2 ENST00000657354.1 ENST00000668972.1 |
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| CDS CAA 72 bp | CACAGGGACATCCATGGCTGGGCTTCAAGGACGCCCTaGAAGAGGCCTCTCCCAGAAAACTCCAAGCCCATG | + |
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Preference number: 6 (lower is better) Translates to: HRDIHGWASRTP*KRPLPENSKPM Trigger: CATGGGCTTGGAGTTTTCTGGGAGAGGCCTCTTCAAGGGCGTCCTTGAAGCCCAGCCATGGATGTCCCTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000555001.2 ENST00000657354.1 ENST00000668972.1 |
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| CDS CAA 90 bp | TTTCCCAACCACAGGGACATCCATGGCTGGGCTTCAAGGACGCCCTaGAAGAGGCCTCTCCCAGAAAACTCCAAGCCCATGAAAAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: FPNHRDIHGWASRTP*KRPLPENSKPMKRP Trigger: TGGCCTTTTCATGGGCTTGGAGTTTTCTGGGAGAGGCCTCTTCAAGGGCGTCCTTGAAGCCCAGCCATGGATGTCCCTGTGGTTGGGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000555001.2 ENST00000657354.1 ENST00000668972.1 |
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| CDS CAA 90 bp | TGGTCTGGGGTGCAGCTCTGGCACAGCATTTCTAAAGCCCTCCCGTaGAAGGAATATGCAGCCAGGGCTGAGACCACGGTTCTGTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: WSGVQLWHSISKALP*KEYAARAETTVLFP Trigger: AGGAAACAGAACCGTGGTCTCAGCCCTGGCTGCATATTCCTTCAACGGGAGGGCTTTAGAAATGCTGTGCCAGAGCTGCACCCCAGACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656095.1 |
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| CDS TCA 72 bp | TGCAGCTCTGGCACAGCATTTCTAAAGCCCTCCCGTTaGAGGAATATGCAGCCAGGGCTGAGACCACGGTTC | + |
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Preference number: 6 (lower is better) Translates to: CSSGTAFLKPSR*RNMQPGLRPRF Trigger: GAACCGTGGTCTCAGCCCTGGCTGCATATTCCTTCAACGGGAGGGCTTTAGAAATGCTGTGCCAGAGCTGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000555001.2 ENST00000656095.1 ENST00000657354.1 ENST00000668972.1 |
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| CDS CAA 72 bp | GTGCAGCTCTGGCACAGCATTTCTAAAGCCCTCCCGTaGAAGGAATATGCAGCCAGGGCTGAGACCACGGTT | + |
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Preference number: 6 (lower is better) Translates to: VQLWHSISKALP*KEYAARAETTV Trigger: AACCGTGGTCTCAGCCCTGGCTGCATATTCCTTCAACGGGAGGGCTTTAGAAATGCTGTGCCAGAGCTGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000555001.2 ENST00000656095.1 ENST00000657354.1 ENST00000668972.1 |
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| CDS CAA 90 bp | AGGGCTGAGACCACGGTTCTGGAGGGAGGTAATATCTGCAGGTTCTaGAGGATACTCCATTACCCTGAGCTCCCCTTTCCCAACCACAGG | + |
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Preference number: 6 (lower is better) Translates to: RAETTVLEGGNICRF*RILHYPELPFPNHR Trigger: CCTGTGGTTGGGAAAGGGGAGCTCAGGGTAATGGAGTATCCTCAAGAACCTGCAGATATTACCTCCCTCCAGAACCGTGGTCTCAGCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000555001.2 ENST00000657354.1 ENST00000668972.1 |
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| CDS TCA 72 bp | CCACGGTTCTGGAGGGAGGTAATATCTGCAGGTTCTTaGGGATACTCCATTACCCTGAGCTCCCCTTTCCCA | + |
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Preference number: 6 (lower is better) Translates to: PRFWREVISAGS*GYSITLSSPFP Trigger: TGGGAAAGGGGAGCTCAGGGTAATGGAGTATCCTCAAGAACCTGCAGATATTACCTCCCTCCAGAACCGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000555001.2 ENST00000657354.1 ENST00000668972.1 |
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| CDS GCA 72 bp | AGGGCTGAGACCACGGTTCTGGAGGGAGGTAATATCTaGAGGTTCTTGAGGATACTCCATTACCCTGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: RAETTVLEGGNI*RFLRILHYPEL Trigger: GAGCTCAGGGTAATGGAGTATCCTCAAGAACCTGCAGATATTACCTCCCTCCAGAACCGTGGTCTCAGCCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000555001.2 ENST00000657354.1 ENST00000668972.1 |
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| CDS CAA 72 bp | ACCACGGTTCTGGAGGGAGGTAATATCTGCAGGTTCTaGAGGATACTCCATTACCCTGAGCTCCCCTTTCCC | + |
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Preference number: 6 (lower is better) Translates to: TTVLEGGNICRF*RILHYPELPFP Trigger: GGGAAAGGGGAGCTCAGGGTAATGGAGTATCCTCAAGAACCTGCAGATATTACCTCCCTCCAGAACCGTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000555001.2 ENST00000657354.1 ENST00000668972.1 |
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| CDS CCA 72 bp | TCAGTTTTCCTGAAAGCTTTCCACATACTGATGCCTTaGCCGCATCCTGGAGAGTCTGATTTTGTTGGTCTG | + |
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Preference number: 6 (lower is better) Translates to: SVFLKAFHILMP*PHPGESDFVGL Trigger: CAGACCAACAAAATCAGACTCTCCAGGATGCGGCCAAGGCATCAGTATGTGGAAAGCTTTCAGGAAAACTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000555001.2 ENST00000656095.1 ENST00000657354.1 ENST00000668972.1 |
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| CDS CCA 72 bp | GTGACAATGTTTTGTATTGCTGATGAGGTTCTTAGCTaGACAGTCACTCTTGCTGCCCTCCAGACTTATTCC | + |
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Preference number: 6 (lower is better) Translates to: VTMFCIADEVLS*TVTLAALQTYS Trigger: GGAATAAGTCTGGAGGGCAGCAAGAGTGACTGTCCAGCTAAGAACCTCATCAGCAATACAAAACATTGTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000555001.2 ENST00000656095.1 ENST00000657354.1 ENST00000668972.1 |
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| CDS CAA 90 bp | CAATGTTTTGTATTGCTGATGAGGTTCTTAGCTGGACAGTCACTCTaGCTGCCCTCCAGACTTATTCCATTTCCATGTATCATCTGCACA | + |
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Preference number: 6 (lower is better) Translates to: QCFVLLMRFLAGQSL*LPSRLIPFPCIICT Trigger: TGTGCAGATGATACATGGAAATGGAATAAGTCTGGAGGGCAGCAAGAGTGACTGTCCAGCTAAGAACCTCATCAGCAATACAAAACATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000657354.1 |
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| CDS CAA 72 bp | CTCTCGTGCTGTTGCAATATCCTTCTTACCGGTTTCTaGGGGGCTTATTTTCTTCTAATCCAATGTATCCCA | + |
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Preference number: 6 (lower is better) Translates to: LSCCCNILLTGF*GAYFLLIQCIP Trigger: TGGGATACATTGGATTAGAAGAAAATAAGCCCCCAAGAAACCGGTAAGAAGGATATTGCAACAGCACGAGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000668972.1 |
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| CDS CAA 72 bp | TTTCTGATATCAAGGAGTTTAAAATCTCTCGTGCTGTaGCAATATCCTTCTTACCGGTTTCTTGGGGGCTTA | + |
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Preference number: 6 (lower is better) Translates to: FLISRSLKSLVL*QYPSYRFLGGL Trigger: TAAGCCCCCAAGAAACCGGTAAGAAGGATATTGCAACAGCACGAGAGATTTTAAACTCCTTGATATCAGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000668972.1 |
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| CDS CAA 90 bp | CACAATTATGTACTTAATTCCTTCTTCTTTGAATTGGCTTTCATTTaGCTCAGTTTTCCTGAAAGCTTTCCACATACTGATGCCTTGGCC | + |
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Preference number: 6 (lower is better) Translates to: HNYVLNSFFFELAFI*LSFPESFPHTDALA Trigger: GGCCAAGGCATCAGTATGTGGAAAGCTTTCAGGAAAACTGAGCAAAATGAAAGCCAATTCAAAGAAGAAGGAATTAAGTACATAATTGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000555001.2 ENST00000656095.1 ENST00000657354.1 ENST00000668972.1 |
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