Pregenerated sensors for LINC02307 (Homo sapiens)
Ensembl gene IDs: ENSG00000258969Ensembl transcript IDs: ENST00000553827.1, ENST00000654351.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TCACCTTTACATCTATGGTTTCGCAAGGGTCCGCGGCTTCATTCTTaGAGTCAGCGAGACCAAGAACCCACCAATTCCGGACACACCATG | + |
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Preference number: 5 (lower is better) Translates to: SPLHLWFRKGPRLHS*SQRDQEPTNSGHTM Trigger: CATGGTGTGTCCGGAATTGGTGGGTTCTTGGTCTCGCTGACTTCAAGAATGAAGCCGCGGACCCTTGCGAAACCATAGATGTAAAGGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654351.1 |
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| CDS CCA 90 bp | CTTGTGGTGAAGGCAAGGCTTCAGCACATCTTACATATGCCTCCATaGCAGGATTCACAGCAGCTCTGTTGCACACATTCAACCCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: LVVKARLQHILHMPP*QDSQQLCCTHSTLH Trigger: GTGGAGGGTTGAATGTGTGCAACAGAGCTGCTGTGAATCCTGCCATGGAGGCATATGTAAGATGTGCTGAAGCCTTGCCTTCACCACAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654351.1 |
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| CDS GCA 90 bp | TGCCTCAGAGTCTCCATGTGTGTCTGCTGTATTTCTCCCTTTCACTaGAGGCCAGCTTTTTCCACATGGCAGAAAGTGTATTTGCCGACA | + |
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Preference number: 5 (lower is better) Translates to: CLRVSMCVCCISPFH*RPAFSTWQKVYLPT Trigger: TGTCGGCAAATACACTTTCTGCCATGTGGAAAAAGCTGGCCTGCAGTGAAAGGGAGAAATACAGCAGACACACATGGAGACTCTGAGGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000553827.1 ENST00000654351.1 |
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| CDS GCA 90 bp | CCTTTCACTGCAGGCCAGCTTTTTCCACATGGCAGAAAGTGTATTTaGCGACACTCTTCACCTTTACATCTATGGTTTCGCAAGGGTCCG | + |
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Preference number: 5 (lower is better) Translates to: PFTAGQLFPHGRKCI*RHSSPLHLWFRKGP Trigger: CGGACCCTTGCGAAACCATAGATGTAAAGGTGAAGAGTGTCGGCAAATACACTTTCTGCCATGTGGAAAAAGCTGGCCTGCAGTGAAAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654351.1 |
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| CDS TCA 90 bp | CAAACCAATGGGAGGCAGTGGTTCTTCCCACTGTGCTGTAAGGCATaGGATCTGGCTTCCTTAATACTTCTTGAAAGGTCTTTGTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: QTNGRQWFFPLCCKA*DLASLILLERSLFL Trigger: AAGAAACAAAGACCTTTCAAGAAGTATTAAGGAAGCCAGATCTCATGCCTTACAGCACAGTGGGAAGAACCACTGCCTCCCATTGGTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654351.1 |
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| CDS CCA 90 bp | CCTTTGGGCCTATTCAGAAGAGTTCCAAGTTCAAGGAGTATTCAATaGCAGAACTTCGATCTTGTCTCATCAACTGAATTTCTATTACAG | + |
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Preference number: 5 (lower is better) Translates to: PLGLFRRVPSSRSIQ*QNFDLVSSTEFLLQ Trigger: CTGTAATAGAAATTCAGTTGATGAGACAAGATCGAAGTTCTGCCATTGAATACTCCTTGAACTTGGAACTCTTCTGAATAGGCCCAAAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654351.1 |
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| CDS GCA 72 bp | CATATGCCTCCATGGCAGGATTCACAGCAGCTCTGTTaGACACATTCAACCCTCCACCTCCAAACCAATGGG | + |
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Preference number: 6 (lower is better) Translates to: HMPPWQDSQQLC*THSTLHLQTNG Trigger: CCCATTGGTTTGGAGGTGGAGGGTTGAATGTGTGCAACAGAGCTGCTGTGAATCCTGCCATGGAGGCATATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654351.1 |
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| CDS CAA 72 bp | ACATCTATGGTTTCGCAAGGGTCCGCGGCTTCATTCTaGAAGTCAGCGAGACCAAGAACCCACCAATTCCGG | + |
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Preference number: 6 (lower is better) Translates to: TSMVSQGSAASF*KSARPRTHQFR Trigger: CCGGAATTGGTGGGTTCTTGGTCTCGCTGACTTCAAGAATGAAGCCGCGGACCCTTGCGAAACCATAGATGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654351.1 |
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| CDS CAA 90 bp | TTCACCTTTACATCTATGGTTTCGCAAGGGTCCGCGGCTTCATTCTaGAAGTCAGCGAGACCAAGAACCCACCAATTCCGGACACACCAT | + |
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Preference number: 6 (lower is better) Translates to: FTFTSMVSQGSAASF*KSARPRTHQFRTHH Trigger: ATGGTGTGTCCGGAATTGGTGGGTTCTTGGTCTCGCTGACTTCAAGAATGAAGCCGCGGACCCTTGCGAAACCATAGATGTAAAGGTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654351.1 |
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| CDS GCA 72 bp | GCAGGCCAGCTTTTTCCACATGGCAGAAAGTGTATTTaGCGACACTCTTCACCTTTACATCTATGGTTTCGC | + |
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Preference number: 6 (lower is better) Translates to: AGQLFPHGRKCI*RHSSPLHLWFR Trigger: GCGAAACCATAGATGTAAAGGTGAAGAGTGTCGGCAAATACACTTTCTGCCATGTGGAAAAAGCTGGCCTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000654351.1 |
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| CDS GCA 72 bp | GCAGGCCAGCTTTTTCCACATGGCAGAAAGTGTATTTaGCGACACTCTTCACCTTTACATCTATGGTTTCAC | + |
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Preference number: 6 (lower is better) Translates to: AGQLFPHGRKCI*RHSSPLHLWFH Trigger: GTGAAACCATAGATGTAAAGGTGAAGAGTGTCGGCAAATACACTTTCTGCCATGTGGAAAAAGCTGGCCTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000553827.1 |
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| CDS CCA 72 bp | AGCGAGACCAAGAACCCACCAATTCCGGACACACCATaGCCACGAAAATTCAGGCTCATAAACAATTTGAAT | + |
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Preference number: 6 (lower is better) Translates to: SETKNPPIPDTP*PRKFRLINNLN Trigger: ATTCAAATTGTTTATGAGCCTGAATTTTCGTGGCCATGGTGTGTCCGGAATTGGTGGGTTCTTGGTCTCGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654351.1 |
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| CDS CAA 90 bp | GAAGAGTTCCAAGTTCAAGGAGTATTCAATGGCAGAACTTCGATCTaGTCTCATCAACTGAATTTCTATTACAGCTTAACCACCAGTATT | + |
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Preference number: 6 (lower is better) Translates to: EEFQVQGVFNGRTSI*SHQLNFYYSLTTSI Trigger: AATACTGGTGGTTAAGCTGTAATAGAAATTCAGTTGATGAGACAAGATCGAAGTTCTGCCATTGAATACTCCTTGAACTTGGAACTCTTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654351.1 |
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| CDS CCA 72 bp | CTATTCAGAAGAGTTCCAAGTTCAAGGAGTATTCAATaGCAGAACTTCGATCTTGTCTCATCAACTGAATTT | + |
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Preference number: 6 (lower is better) Translates to: LFRRVPSSRSIQ*QNFDLVSSTEF Trigger: AAATTCAGTTGATGAGACAAGATCGAAGTTCTGCCATTGAATACTCCTTGAACTTGGAACTCTTCTGAATAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654351.1 |
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| CDS CAA 90 bp | CCTGTAATGACCAAAAGTAGTTTATATAGTCAAAGTTATCTTCCTTaGGGCCTATTCAGAAGAGTTCCAAGTTCAAGGAGTATTCAATGG | + |
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Preference number: 6 (lower is better) Translates to: PVMTKSSLYSQSYLP*GLFRRVPSSRSIQW Trigger: CCATTGAATACTCCTTGAACTTGGAACTCTTCTGAATAGGCCCAAAGGAAGATAACTTTGACTATATAAACTACTTTTGGTCATTACAGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654351.1 |
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| CDS CAA 72 bp | ACCAAAAGTAGTTTATATAGTCAAAGTTATCTTCCTTaGGGCCTATTCAGAAGAGTTCCAAGTTCAAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: TKSSLYSQSYLP*GLFRRVPSSRS Trigger: ACTCCTTGAACTTGGAACTCTTCTGAATAGGCCCAAAGGAAGATAACTTTGACTATATAAACTACTTTTGGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654351.1 |
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