Pregenerated sensors for LINC02305 (Homo sapiens)
Ensembl gene IDs: ENSG00000258532Ensembl transcript IDs: ENST00000554142.2, ENST00000655329.1, ENST00000659631.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ACAACGAGAAATGCATCATTGTGGAGAATCAGTATAGTTGAAAGTTaGGATTCTGCAATCATGAAGAGGGCTGTATGTGAGTCTTTGAAT | + |
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Preference number: 5 (lower is better) Translates to: TTRNASLWRISIVES*DSAIMKRAVCESLN Trigger: ATTCAAAGACTCACATACAGCCCTCTTCATGATTGCAGAATCTCAACTTTCAACTATACTGATTCTCCACAATGATGCATTTCTCGTTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000554142.2 ENST00000659631.1 |
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| CDS CAA 72 bp | CTTTCTTTGCATTTCAACATGCTTTATGTAGCTCCATaGATCAAGATCGGCTCCTGGTTACAACAAGGAGTC | + |
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Preference number: 6 (lower is better) Translates to: LSLHFNMLYVAP*IKIGSWLQQGV Trigger: GACTCCTTGTTGTAACCAGGAGCCGATCTTGATCAATGGAGCTACATAAAGCATGTTGAAATGCAAAGAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655329.1 |
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| CDS CAA 90 bp | TCCTTCTATCTTTCTTTGCATTTCAACATGCTTTATGTAGCTCCATaGATCAAGATCGGCTCCTGGTTACAACAAGGAGTCCTTGTAACT | + |
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Preference number: 6 (lower is better) Translates to: SFYLSLHFNMLYVAP*IKIGSWLQQGVLVT Trigger: AGTTACAAGGACTCCTTGTTGTAACCAGGAGCCGATCTTGATCAATGGAGCTACATAAAGCATGTTGAAATGCAAAGAAAGATAGAAGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000655329.1 |
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| CDS CAA 90 bp | AGAATCCTCAATGTTTTCAGTACCACAGGCTCCTTCTATCTTTCTTaGCATTTCAACATGCTTTATGTAGCTCCATTGATCAAGATCGGC | + |
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Preference number: 6 (lower is better) Translates to: RILNVFSTTGSFYLS*HFNMLYVAPLIKIG Trigger: GCCGATCTTGATCAATGGAGCTACATAAAGCATGTTGAAATGCAAAGAAAGATAGAAGGAGCCTGTGGTACTGAAAACATTGAGGATTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000655329.1 |
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| CDS TCA 72 bp | ATTAGAACAAGAAGTCCTTCAGCTACATCCAGCTTCTaGTTAGTTGGATATCACTCCAATTTGTCTCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: IRTRSPSATSSF*LVGYHSNLSPF Trigger: GAAGGGAGACAAATTGGAGTGATATCCAACTAATCAGAAGCTGGATGTAGCTGAAGGACTTCTTGTTCTAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000655329.1 ENST00000659631.1 |
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| CDS CCA 72 bp | AAGAAGTCCTTCAGCTACATCCAGCTTCTGATTAGTTaGATATCACTCCAATTTGTCTCCCTTAATGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: KKSFSYIQLLIS*ISLQFVSLNVL Trigger: GAGAACATTAAGGGAGACAAATTGGAGTGATATCCAACTAATCAGAAGCTGGATGTAGCTGAAGGACTTCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554142.2 |
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| CDS TCA 72 bp | ATTAGAACAAGAAGTCCTTCAGCTACATCCAGCTTCTaGTTAGTTGGATATCACTCCAATTTGTCTCCCTTA | + |
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Preference number: 6 (lower is better) Translates to: IRTRSPSATSSF*LVGYHSNLSPL Trigger: TAAGGGAGACAAATTGGAGTGATATCCAACTAATCAGAAGCTGGATGTAGCTGAAGGACTTCTTGTTCTAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554142.2 |
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| CDS TCA 72 bp | GCTGTATGTGAGTCTTTGAATCACGTATTGTTTCTGTaGTATTCAGCAAGTTATTGCATCTTTCTCAGCCTC | + |
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Preference number: 6 (lower is better) Translates to: AVCESLNHVLFL*YSASYCIFLSL Trigger: GAGGCTGAGAAAGATGCAATAACTTGCTGAATATCACAGAAACAATACGTGATTCAAAGACTCACATACAGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000554142.2 ENST00000659631.1 |
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| CDS TCA 72 bp | AATGCATCATTGTGGAGAATCAGTATAGTTGAAAGTTaGGATTCTGCAATCATGAAGAGGGCTGTATGTGAG | + |
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Preference number: 6 (lower is better) Translates to: NASLWRISIVES*DSAIMKRAVCE Trigger: CTCACATACAGCCCTCTTCATGATTGCAGAATCTCAACTTTCAACTATACTGATTCTCCACAATGATGCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000554142.2 ENST00000659631.1 |
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| CDS TCA 72 bp | AAGTTGAGATTCTGCAATCATGAAGAGGGCTGTATGTaGGTCTTTGAATCACGTATTGTTTCTGTGATATTC | + |
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Preference number: 6 (lower is better) Translates to: KLRFCNHEEGCM*VFESRIVSVIF Trigger: GAATATCACAGAAACAATACGTGATTCAAAGACTCACATACAGCCCTCTTCATGATTGCAGAATCTCAACTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000554142.2 ENST00000659631.1 |
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| CDS CAA 72 bp | CTTAAAAATTTAAGTGACTCTTGGTTTCAGTACTTCTaGGACTTTATCCTCTCCAAAGCCCTGTTGGAATAT | + |
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Preference number: 6 (lower is better) Translates to: LKNLSDSWFQYF*DFILSKALLEY Trigger: ATATTCCAACAGGGCTTTGGAGAGGATAAAGTCCAAGAAGTACTGAAACCAAGAGTCACTTAAATTTTTAAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000554142.2 ENST00000659631.1 |
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