Pregenerated sensors for LINC02299 (Homo sapiens)
Ensembl gene IDs: ENSG00000258979Ensembl transcript IDs: ENST00000556669.1, ENST00000650059.1, ENST00000654843.1, ENST00000664687.1
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGGAGCCCTGAGCTTGTTCTCTTGCAACTAGATGGTCCCATCTCTTaGTCACTTTCATATCACAGCCCCTGCTCATCCGAGAACCTCGTT | + |
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Preference number: 5 (lower is better) Translates to: GSPELVLLQLDGPIS*SLSYHSPCSSENLV Trigger: AACGAGGTTCTCGGATGAGCAGGGGCTGTGATATGAAAGTGATCAAGAGATGGGACCATCTAGTTGCAAGAGAACAAGCTCAGGGCTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000556669.1 ENST00000650059.1 ENST00000654843.1 ENST00000664687.1 |
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| CDS TCA 90 bp | GCAGGAAGAAGAGTAAATCGTTCTACCAAGCCTCACAGAGAAGCCTaGGAAGGTAGAGAAGGCAGCGTGAACCCAGTTACTCTGCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: AGRRVNRSTKPHREA*EGREGSVNPVTLLN Trigger: GTTCAGCAGAGTAACTGGGTTCACGCTGCCTTCTCTACCTTCTCAGGCTTCTCTGTGAGGCTTGGTAGAACGATTTACTCTTCTTCCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654843.1 ENST00000664687.1 |
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| CDS GCA 90 bp | CAGTTGGGCCTTAAGCCAAAGTTTCGACTGACTCAGAAGACCAAATaGTTAACCACTCTACCGTGCGGTTCACCAAACACTCACCATTTC | + |
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Preference number: 5 (lower is better) Translates to: QLGLKPKFRLTQKTK*LTTLPCGSPNTHHF Trigger: GAAATGGTGAGTGTTTGGTGAACCGCACGGTAGAGTGGTTAAGCATTTGGTCTTCTGAGTCAGTCGAAACTTTGGCTTAAGGCCCAACTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654843.1 ENST00000664687.1 |
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| CDS GCA 90 bp | AAAGTCTCTCTAGATCATTTCTCCTCTTCATTTTACTTCTCACATTaGACACTGGATCCGATGCCCCCAAACCCAAGGGTGTGGACTTCC | + |
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Preference number: 5 (lower is better) Translates to: KVSLDHFSSSFYFSH*TLDPMPPNPRVWTS Trigger: GGAAGTCCACACCCTTGGGTTTGGGGGCATCGGATCCAGTGTGCAATGTGAGAAGTAAAATGAAGAGGAGAAATGATCTAGAGAGACTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000556669.1 ENST00000650059.1 |
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| CDS GCA 90 bp | AAGTTTCGACTGACTCAGAAGACCAAATGCTTAACCACTCTACCGTaGGGTTCACCAAACACTCACCATTTCATATGCTTATATCTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: KFRLTQKTKCLTTLP*GSPNTHHFICLYLL Trigger: CAGAAGATATAAGCATATGAAATGGTGAGTGTTTGGTGAACCGCACGGTAGAGTGGTTAAGCATTTGGTCTTCTGAGTCAGTCGAAACTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654843.1 ENST00000664687.1 |
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| CDS GCA 72 bp | GGTCACATACATGGAGGTGCAATGTTTGAATTCAGGTaGATCTTCTCCAAAGCCAGGGATATGGCCGTCCCA | + |
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Preference number: 6 (lower is better) Translates to: GHIHGGAMFEFR*IFSKARDMAVP Trigger: TGGGACGGCCATATCCCTGGCTTTGGAGAAGATGCACCTGAATTCAAACATTGCACCTCCATGTATGTGACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000650059.1 |
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| CDS CCA 72 bp | CATGCTGGGAAAACCATCTCATGTAACCTTGTGAGGTaGGTGATACGACCCCAGTGTCCAGATGAAGAGACA | + |
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Preference number: 6 (lower is better) Translates to: HAGKTISCNLVR*VIRPQCPDEET Trigger: TGTCTCTTCATCTGGACACTGGGGTCGTATCACCCACCTCACAAGGTTACATGAGATGGTTTTCCCAGCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000654843.1 ENST00000664687.1 |
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| CDS TCA 72 bp | GAGCTTGTTCTCTTGCAACTAGATGGTCCCATCTCTTaGTCACTTTCATATCACAGCCCCTGCTCATCCGAG | + |
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Preference number: 6 (lower is better) Translates to: ELVLLQLDGPIS*SLSYHSPCSSE Trigger: CTCGGATGAGCAGGGGCTGTGATATGAAAGTGATCAAGAGATGGGACCATCTAGTTGCAAGAGAACAAGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000556669.1 ENST00000650059.1 ENST00000654843.1 ENST00000664687.1 |
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| CDS TCA 72 bp | AGAGTAAATCGTTCTACCAAGCCTCACAGAGAAGCCTaGGAAGGTAGAGAAGGCAGCGTGAACCCAGTTACT | + |
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Preference number: 6 (lower is better) Translates to: RVNRSTKPHREA*EGREGSVNPVT Trigger: AGTAACTGGGTTCACGCTGCCTTCTCTACCTTCTCAGGCTTCTCTGTGAGGCTTGGTAGAACGATTTACTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654843.1 ENST00000664687.1 |
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| CDS CCA 72 bp | ATTTCTCCTCTTCATTTTACTTCTCACATTGCACACTaGATCCGATGCCCCCAAACCCAAGGGTGTGGACTT | + |
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Preference number: 6 (lower is better) Translates to: ISPLHFTSHIAH*IRCPQTQGCGL Trigger: AAGTCCACACCCTTGGGTTTGGGGGCATCGGATCCAGTGTGCAATGTGAGAAGTAAAATGAAGAGGAGAAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000556669.1 ENST00000650059.1 |
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| CDS GCA 72 bp | CTGACTCAGAAGACCAAATGCTTAACCACTCTACCGTaGGGTTCACCAAACACTCACCATTTCATATGCTTA | + |
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Preference number: 6 (lower is better) Translates to: LTQKTKCLTTLP*GSPNTHHFICL Trigger: TAAGCATATGAAATGGTGAGTGTTTGGTGAACCGCACGGTAGAGTGGTTAAGCATTTGGTCTTCTGAGTCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654843.1 ENST00000664687.1 |
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| CDS CAA 72 bp | GATGACACTGACGATGGCAGCTTCCATTTATTGAGTTaGAAGCATTTGCCAAGAACCGCACCAATACTTTAT | + |
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Preference number: 6 (lower is better) Translates to: DDTDDGSFHLLS*KHLPRTAPILY Trigger: ATAAAGTATTGGTGCGGTTCTTGGCAAATGCTTCAAACTCAATAAATGGAAGCTGCCATCGTCAGTGTCATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654843.1 ENST00000664687.1 |
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| CDS CAA 90 bp | GGTAACGATGATGATGATGACACTGACGATGGCAGCTTCCATTTATaGAGTTTGAAGCATTTGCCAAGAACCGCACCAATACTTTATAAA | + |
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Preference number: 6 (lower is better) Translates to: GNDDDDDTDDGSFHL*SLKHLPRTAPILYK Trigger: TTTATAAAGTATTGGTGCGGTTCTTGGCAAATGCTTCAAACTCAATAAATGGAAGCTGCCATCGTCAGTGTCATCATCATCATCGTTACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654843.1 ENST00000664687.1 |
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| CDS CAA 72 bp | GACGATGGCAGCTTCCATTTATTGAGTTTGAAGCATTaGCCAAGAACCGCACCAATACTTTATAAACACCAT | + |
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Preference number: 6 (lower is better) Translates to: DDGSFHLLSLKH*PRTAPILYKHH Trigger: ATGGTGTTTATAAAGTATTGGTGCGGTTCTTGGCAAATGCTTCAAACTCAATAAATGGAAGCTGCCATCGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000654843.1 ENST00000664687.1 |
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