Pregenerated sensors for LINC02286 (Homo sapiens)
Ensembl gene IDs: ENSG00000258098Ensembl transcript IDs: ENST00000552425.2, ENST00000665826.1, ENST00000668310.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCCATCACTTGTCTATGTCCAAATTGCCTCAAAAGTCTTGCACGATaGGTGGTAACAGCATTTGCCCTCCGTTTGGTGTACACCTCTGTA | + |
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Preference number: 5 (lower is better) Translates to: PITCLCPNCLKSLAR*VVTAFALRLVYTSV Trigger: TACAGAGGTGTACACCAAACGGAGGGCAAATGCTGTTACCACTCATCGTGCAAGACTTTTGAGGCAATTTGGACATAGACAAGTGATGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000552425.2 ENST00000665826.1 ENST00000668310.1 |
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| CDS GCA 90 bp | CAATTTTCCCATCACTTGTCTATGTCCAAATTGCCTCAAAAGTCTTaGACGATGAGTGGTAACAGCATTTGCCCTCCGTTTGGTGTACAC | + |
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Preference number: 5 (lower is better) Translates to: QFSHHLSMSKLPQKS*TMSGNSICPPFGVH Trigger: GTGTACACCAAACGGAGGGCAAATGCTGTTACCACTCATCGTGCAAGACTTTTGAGGCAATTTGGACATAGACAAGTGATGGGAAAATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000552425.2 ENST00000665826.1 ENST00000668310.1 |
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| CDS TCA 90 bp | TTCAACAAATGCCCCAAACAGTATGGATTGAACAGCATCATCCATTaGACTAATGAAAGCTGGAGCCTGTATTATCCTCAGTCCACTGCC | + |
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Preference number: 5 (lower is better) Translates to: FNKCPKQYGLNSIIH*TNESWSLYYPQSTA Trigger: GGCAGTGGACTGAGGATAATACAGGCTCCAGCTTTCATTAGTTCAATGGATGATGCTGTTCAATCCATACTGTTTGGGGCATTTGTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000552425.2 ENST00000665826.1 ENST00000668310.1 |
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| CDS TCA 90 bp | CCTGGAGCACTGAGTGAATTAACTTGTCTTTTTGCCTTATTGAATTaGTCAGAATATTTGGCATCTTTCATCTTCAACCCTTGTCGTCAT | + |
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Preference number: 5 (lower is better) Translates to: PGALSELTCLFALLN*SEYLASFIFNPCRH Trigger: ATGACGACAAGGGTTGAAGATGAAAGATGCCAAATATTCTGATCAATTCAATAAGGCAAAAAGACAAGTTAATTCACTCAGTGCTCCAGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000552425.2 ENST00000665826.1 ENST00000668310.1 |
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| CDS TCA 72 bp | TGTCTATGTCCAAATTGCCTCAAAAGTCTTGCACGATaGGTGGTAACAGCATTTGCCCTCCGTTTGGTGTAC | + |
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Preference number: 6 (lower is better) Translates to: CLCPNCLKSLAR*VVTAFALRLVY Trigger: GTACACCAAACGGAGGGCAAATGCTGTTACCACTCATCGTGCAAGACTTTTGAGGCAATTTGGACATAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000552425.2 ENST00000665826.1 ENST00000668310.1 |
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| CDS GCA 72 bp | CCTCAAAAGTCTTGCACGATGAGTGGTAACAGCATTTaGCCTCCGTTTGGTGTACACCTCTGTAGTTCTTTA | + |
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Preference number: 6 (lower is better) Translates to: PQKSCTMSGNSI*PPFGVHLCSSL Trigger: TAAAGAACTACAGAGGTGTACACCAAACGGAGGGCAAATGCTGTTACCACTCATCGTGCAAGACTTTTGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000552425.2 ENST00000665826.1 ENST00000668310.1 |
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| CDS CAA 72 bp | TTGATTGATCTTGGACTTCCCGCCTCTAGGATTGGATaGCTGGGTCAAAGAACAGGAGCCTGTTTAACTTCA | + |
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Preference number: 6 (lower is better) Translates to: LIDLGLPASRIG*LGQRTGACLTS Trigger: TGAAGTTAAACAGGCTCCTGTTCTTTGACCCAGCAATCCAATCCTAGAGGCGGGAAGTCCAAGATCAATCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000668310.1 |
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| CDS GCA 72 bp | CATCACTTGTCTATGTCCAAATTGCCTCAAAAGTCTTaGACGATGAGTGGTAACAGCATTTGCCCTCCGTTT | + |
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Preference number: 6 (lower is better) Translates to: HHLSMSKLPQKS*TMSGNSICPPF Trigger: AAACGGAGGGCAAATGCTGTTACCACTCATCGTGCAAGACTTTTGAGGCAATTTGGACATAGACAAGTGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000552425.2 ENST00000665826.1 ENST00000668310.1 |
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| CDS TCA 72 bp | TGCCCCAAACAGTATGGATTGAACAGCATCATCCATTaGACTAATGAAAGCTGGAGCCTGTATTATCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: CPKQYGLNSIIH*TNESWSLYYPQ Trigger: CTGAGGATAATACAGGCTCCAGCTTTCATTAGTTCAATGGATGATGCTGTTCAATCCATACTGTTTGGGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000552425.2 ENST00000665826.1 ENST00000668310.1 |
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| CDS CAA 72 bp | GCATGGCACTTAGCAAAGGTACAGGTCCTTGGATGTTaGAGTTTTCAACACTGTCATGAGCCATATAATGAT | + |
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Preference number: 6 (lower is better) Translates to: AWHLAKVQVLGC*SFQHCHEPYND Trigger: ATCATTATATGGCTCATGACAGTGTTGAAAACTCAAACATCCAAGGACCTGTACCTTTGCTAAGTGCCATGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000552425.2 ENST00000665826.1 ENST00000668310.1 |
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| CDS CCA 72 bp | TCAAAGAACAGGAGCCTGTTTAACTTCAGAAGACACTaGCAGCTTTCATTTCTTCTTTGGTGTAACGTGATA | + |
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Preference number: 6 (lower is better) Translates to: SKNRSLFNFRRH*QLSFLLWCNVI Trigger: TATCACGTTACACCAAAGAAGAAATGAAAGCTGCCAGTGTCTTCTGAAGTTAAACAGGCTCCTGTTCTTTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000552425.2 ENST00000665826.1 ENST00000668310.1 |
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| CDS CAA 90 bp | TTCAACACTGTCATGAGCCATATAATGATTCAATTTTCCCATCACTaGTCTATGTCCAAATTGCCTCAAAAGTCTTGCACGATGAGTGGT | + |
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Preference number: 6 (lower is better) Translates to: FNTVMSHIMIQFSHH*SMSKLPQKSCTMSG Trigger: ACCACTCATCGTGCAAGACTTTTGAGGCAATTTGGACATAGACAAGTGATGGGAAAATTGAATCATTATATGGCTCATGACAGTGTTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000552425.2 ENST00000665826.1 ENST00000668310.1 |
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| CDS CAA 90 bp | GCAACATATGCATGGCACTTAGCAAAGGTACAGGTCCTTGGATGTTaGAGTTTTCAACACTGTCATGAGCCATATAATGATTCAATTTTC | + |
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Preference number: 6 (lower is better) Translates to: ATYAWHLAKVQVLGC*SFQHCHEPYNDSIF Trigger: GAAAATTGAATCATTATATGGCTCATGACAGTGTTGAAAACTCAAACATCCAAGGACCTGTACCTTTGCTAAGTGCCATGCATATGTTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000552425.2 ENST00000665826.1 ENST00000668310.1 |
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| CDS TCA 72 bp | ATGACATTTTCAACAAATGCCCCAAACAGTATGGATTaGACAGCATCATCCATTGAACTAATGAAAGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: MTFSTNAPNSMD*TASSIELMKAG Trigger: TCCAGCTTTCATTAGTTCAATGGATGATGCTGTTCAATCCATACTGTTTGGGGCATTTGTTGAAAATGTCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000552425.2 ENST00000665826.1 ENST00000668310.1 |
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| CDS CAA 72 bp | TTGATCAGAATATTTGGCATCTTTCATCTTCAACCCTaGTCGTCATTATTGCCTTGTGACTTTTGTGAAGAA | + |
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Preference number: 6 (lower is better) Translates to: LIRIFGIFHLQP*SSLLPCDFCEE Trigger: TTCTTCACAAAAGTCACAAGGCAATAATGACGACAAGGGTTGAAGATGAAAGATGCCAAATATTCTGATCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000552425.2 ENST00000665826.1 ENST00000668310.1 |
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