Pregenerated sensors for LINC02282 (Homo sapiens)
Ensembl gene IDs: ENSG00000257056Ensembl transcript IDs: ENST00000535153.2, ENST00000656598.1, ENST00000664733.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TTGTTTTATTCTGATGTAAATCAGTCACCTAATGCTGAGAAGGACTaGAGTGGCTCATATGGTCGTTCTGTGTTTTGTAGAATACGTAGG | + |
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Preference number: 5 (lower is better) Translates to: LFYSDVNQSPNAEKD*SGSYGRSVFCRIRR Trigger: CCTACGTATTCTACAAAACACAGAACGACCATATGAGCCACTTCAGTCCTTCTCAGCATTAGGTGACTGATTTACATCAGAATAAAACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000535153.2 ENST00000656598.1 |
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| CDS CCA 90 bp | AAATTGGGATTAATCGAGCAGTTTAAATACAAATCTGCCGGAAATTaGAAATCGTGCTCTGTGCGAATGAAAATGAAAGACTTTATGCAT | + |
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Preference number: 5 (lower is better) Translates to: KLGLIEQFKYKSAGN*KSCSVRMKMKDFMH Trigger: ATGCATAAAGTCTTTCATTTTCATTCGCACAGAGCACGATTTCCAATTTCCGGCAGATTTGTATTTAAACTGCTCGATTAATCCCAATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000535153.2 ENST00000656598.1 ENST00000664733.1 |
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| CDS GCA 72 bp | AGAAGCCTCGTGCGGCTTGAGTTTAGAGTCACGCCCTaGCCAGCGACATTCTCCCGCGCACGGGAGAACCTG | + |
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Preference number: 6 (lower is better) Translates to: RSLVRLEFRVTP*PATFSRARENL Trigger: CAGGTTCTCCCGTGCGCGGGAGAATGTCGCTGGGCAGGGCGTGACTCTAAACTCAAGCCGCACGAGGCTTCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656598.1 |
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| CDS CAA 72 bp | CTTCCATTCTCCCCTCCCCCTTTCAACAATCTGAAGTaGTTAGGGTCCGCAGTTCTGCCGCCACCGATCCCA | + |
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Preference number: 6 (lower is better) Translates to: LPFSPPPFNNLK*LGSAVLPPPIP Trigger: TGGGATCGGTGGCGGCAGAACTGCGGACCCTAACAACTTCAGATTGTTGAAAGGGGGAGGGGAGAATGGAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000535153.2 ENST00000656598.1 ENST00000664733.1 |
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| CDS CAA 72 bp | TCGTTTGCAGTCGCGGCTTCACAGACAACAACCAGCTaGCATTCAACTGTGGTCCAATGCATCAGTCTAGTT | + |
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Preference number: 6 (lower is better) Translates to: SFAVAASQTTTS*HSTVVQCISLV Trigger: AACTAGACTGATGCATTGGACCACAGTTGAATGCAAGCTGGTTGTTGTCTGTGAAGCCGCGACTGCAAACGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000535153.2 ENST00000656598.1 ENST00000664733.1 |
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| CDS CAA 90 bp | AACAGGCTCTCGTTTGCAGTCGCGGCTTCACAGACAACAACCAGCTaGCATTCAACTGTGGTCCAATGCATCAGTCTAGTTTTAAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: NRLSFAVAASQTTTS*HSTVVQCISLVLRG Trigger: TCCTCTTAAAACTAGACTGATGCATTGGACCACAGTTGAATGCAAGCTGGTTGTTGTCTGTGAAGCCGCGACTGCAAACGAGAGCCTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000535153.2 ENST00000656598.1 ENST00000664733.1 |
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| CDS CAA 72 bp | CATTTCAAAAACATATCCTTTCCAACAGGCTCTCGTTaGCAGTCGCGGCTTCACAGACAACAACCAGCTTGC | + |
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Preference number: 6 (lower is better) Translates to: HFKNISFPTGSR*QSRLHRQQPAC Trigger: GCAAGCTGGTTGTTGTCTGTGAAGCCGCGACTGCAAACGAGAGCCTGTTGGAAAGGATATGTTTTTGAAATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000535153.2 ENST00000656598.1 ENST00000664733.1 |
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| CDS TCA 72 bp | GCTCCTCCGGAAATTAGACCTAATGCTGAGAAGGACTaGAGTGGCTCATATGGTCGTTCTGTGTTTTGTAGA | + |
|
Preference number: 6 (lower is better) Translates to: APPEIRPNAEKD*SGSYGRSVFCR Trigger: TCTACAAAACACAGAACGACCATATGAGCCACTTCAGTCCTTCTCAGCATTAGGTCTAATTTCCGGAGGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664733.1 |
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| CDS GCA 72 bp | ATTTCAAAAACATATCCTTTCCAACAGGCTCTCGTTTaGAGTCGCGGCTTCACAGACAACAACCAGCTTGCA | + |
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Preference number: 6 (lower is better) Translates to: ISKTYPFQQALV*SRGFTDNNQLA Trigger: TGCAAGCTGGTTGTTGTCTGTGAAGCCGCGACTGCAAACGAGAGCCTGTTGGAAAGGATATGTTTTTGAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000535153.2 ENST00000656598.1 ENST00000664733.1 |
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| CDS CAA 90 bp | TTAGGTACACATTTCAAAAACATATCCTTTCCAACAGGCTCTCGTTaGCAGTCGCGGCTTCACAGACAACAACCAGCTTGCATTCAACTG | + |
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Preference number: 6 (lower is better) Translates to: LGTHFKNISFPTGSR*QSRLHRQQPACIQL Trigger: CAGTTGAATGCAAGCTGGTTGTTGTCTGTGAAGCCGCGACTGCAAACGAGAGCCTGTTGGAAAGGATATGTTTTTGAAATGTGTACCTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000535153.2 ENST00000656598.1 ENST00000664733.1 |
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| CDS CAA 90 bp | GAAGGAAAGGTTTGGAGGGTGGATTATGTCCAAGCATCTCAGCTATaGCTAGTGGTGAAAAGATATGACCTGGGTAGAATGGGAAAGGTT | + |
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Preference number: 6 (lower is better) Translates to: EGKVWRVDYVQASQL*LVVKRYDLGRMGKV Trigger: AACCTTTCCCATTCTACCCAGGTCATATCTTTTCACCACTAGCAATAGCTGAGATGCTTGGACATAATCCACCCTCCAAACCTTTCCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000535153.2 ENST00000656598.1 ENST00000664733.1 |
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| CDS CAA 72 bp | GTTTGGAGGGTGGATTATGTCCAAGCATCTCAGCTATaGCTAGTGGTGAAAAGATATGACCTGGGTAGAATG | + |
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Preference number: 6 (lower is better) Translates to: VWRVDYVQASQL*LVVKRYDLGRM Trigger: CATTCTACCCAGGTCATATCTTTTCACCACTAGCAATAGCTGAGATGCTTGGACATAATCCACCCTCCAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000535153.2 ENST00000656598.1 ENST00000664733.1 |
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| CDS CAA 90 bp | TGTAGGCAGGACAGGACAGTTAGGGCTCCTCCGGAAATTAGACCTTaGGAAATCAATGCAGAGTTTCTATTACATTTCTGGACATTCAGA | + |
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Preference number: 6 (lower is better) Translates to: CRQDRTVRAPPEIRP*EINAEFLLHFWTFR Trigger: TCTGAATGTCCAGAAATGTAATAGAAACTCTGCATTGATTTCCAAAGGTCTAATTTCCGGAGGAGCCCTAACTGTCCTGTCCTGCCTACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000535153.2 ENST00000656598.1 |
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| CDS CAA 72 bp | GACAGGACAGTTAGGGCTCCTCCGGAAATTAGACCTTaGGAAATCAATGCAGAGTTTCTATTACATTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: DRTVRAPPEIRP*EINAEFLLHFW Trigger: CCAGAAATGTAATAGAAACTCTGCATTGATTTCCAAAGGTCTAATTTCCGGAGGAGCCCTAACTGTCCTGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000535153.2 ENST00000656598.1 |
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| CDS TCA 72 bp | TCTGATGTAAATCAGTCACCTAATGCTGAGAAGGACTaGAGTGGCTCATATGGTCGTTCTGTGTTTTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: SDVNQSPNAEKD*SGSYGRSVFCR Trigger: TCTACAAAACACAGAACGACCATATGAGCCACTTCAGTCCTTCTCAGCATTAGGTGACTGATTTACATCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000535153.2 ENST00000656598.1 |
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| CDS TCA 72 bp | TCTAGAAAGTCATTTCCTCTCAAACCGAATTCTCAGTaGCAGCTAGGTGGAAGAGAGCTTAAAAGTGATTTT | + |
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Preference number: 6 (lower is better) Translates to: SRKSFPLKPNSQ*QLGGRELKSDF Trigger: AAAATCACTTTTAAGCTCTCTTCCACCTAGCTGTCACTGAGAATTCGGTTTGAGAGGAAATGACTTTCTAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000535153.2 ENST00000656598.1 |
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| CDS CCA 72 bp | GGTTTTGATGACATGAGAGGATCTGCAAGAGTCTATTaGCCCTATCATGTTTATTCTCTTTTAGGTACACAT | + |
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Preference number: 6 (lower is better) Translates to: GFDDMRGSARVY*PYHVYSLLGTH Trigger: ATGTGTACCTAAAAGAGAATAAACATGATAGGGCCAATAGACTCTTGCAGATCCTCTCATGTCATCAAAACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000535153.2 ENST00000656598.1 ENST00000664733.1 |
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| CDS CCA 72 bp | TTAATCGAGCAGTTTAAATACAAATCTGCCGGAAATTaGAAATCGTGCTCTGTGCGAATGAAAATGAAAGAC | + |
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Preference number: 6 (lower is better) Translates to: LIEQFKYKSAGN*KSCSVRMKMKD Trigger: GTCTTTCATTTTCATTCGCACAGAGCACGATTTCCAATTTCCGGCAGATTTGTATTTAAACTGCTCGATTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000535153.2 ENST00000656598.1 ENST00000664733.1 |
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| CDS TCA 72 bp | ACTCATAATTGGGATTTACATGCGATCTATAAACACTaGAGGAAAGCCAGAACCACTACATTTTGCTTAGAT | + |
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Preference number: 6 (lower is better) Translates to: THNWDLHAIYKH*RKARTTTFCLD Trigger: ATCTAAGCAAAATGTAGTGGTTCTGGCTTTCCTTCAGTGTTTATAGATCGCATGTAAATCCCAATTATGAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656598.1 ENST00000664733.1 |
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| CDS GCA 72 bp | CAGTTTAAATACAAATCTGCCGGAAATTGGAAATCGTaGTCTGTGCGAATGAAAATGAAAGACTTTATGCAT | + |
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Preference number: 6 (lower is better) Translates to: QFKYKSAGNWKS*SVRMKMKDFMH Trigger: ATGCATAAAGTCTTTCATTTTCATTCGCACAGAGCACGATTTCCAATTTCCGGCAGATTTGTATTTAAACTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000535153.2 ENST00000656598.1 ENST00000664733.1 |
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| CDS TCA 72 bp | TCTATTACATTTCTGGACATTCAGAGAGCTAGAGGATaGGAAAGACTCTTGGTTGAATATGATGAAAAATCA | + |
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Preference number: 6 (lower is better) Translates to: SITFLDIQRARG*ERLLVEYDEKS Trigger: TGATTTTTCATCATATTCAACCAAGAGTCTTTCTCATCCTCTAGCTCTCTGAATGTCCAGAAATGTAATAGA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000535153.2 ENST00000656598.1 |
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