Pregenerated sensors for LINC02281 (Homo sapiens)
Ensembl gene IDs: ENSG00000257748Ensembl transcript IDs: ENST00000549013.1, ENST00000653605.1
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 72 bp | CTGTTTCCCCTCATGCAGCTAATAGGCATTCCAGTATaGGACCGACCCAGGTCTGCCTTAATATATATACCG | + |
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Preference number: 6 (lower is better) Translates to: LFPLMQLIGIPV*DRPRSALIYIP Trigger: CGGTATATATATTAAGGCAGACCTGGGTCGGTCTCATACTGGAATGCCTATTAGCTGCATGAGGGGAAACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653605.1 |
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| CDS CCA 72 bp | TCCCTTGGTCCAGATGTTGTCCAGTCCTCTACTTTCTaGTTACTGTTTCCCCTCATGCAGCTAATAGGCATT | + |
|
Preference number: 6 (lower is better) Translates to: SLGPDVVQSSTF*LLFPLMQLIGI Trigger: AATGCCTATTAGCTGCATGAGGGGAAACAGTAACCAGAAAGTAGAGGACTGGACAACATCTGGACCAAGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000549013.1 ENST00000653605.1 |
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| CDS CAA 90 bp | ATTCTAGGACTTATTGATGTTAATTTTGATCCCTTGGTCCAGATGTaGTCCAGTCCTCTACTTTCTGGTTACTGTTTCCCCTCATGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: ILGLIDVNFDPLVQM*SSPLLSGYCFPSCS Trigger: GCTGCATGAGGGGAAACAGTAACCAGAAAGTAGAGGACTGGACAACATCTGGACCAAGGGATCAAAATTAACATCAATAAGTCCTAGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000549013.1 ENST00000653605.1 |
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| CDS CAA 72 bp | CTTATTGATGTTAATTTTGATCCCTTGGTCCAGATGTaGTCCAGTCCTCTACTTTCTGGTTACTGTTTCCCC | + |
|
Preference number: 6 (lower is better) Translates to: LIDVNFDPLVQM*SSPLLSGYCFP Trigger: GGGGAAACAGTAACCAGAAAGTAGAGGACTGGACAACATCTGGACCAAGGGATCAAAATTAACATCAATAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000549013.1 ENST00000653605.1 |
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| CDS CAA 72 bp | CTGATTCTAGGACTTATTGATGTTAATTTTGATCCCTaGGTCCAGATGTTGTCCAGTCCTCTACTTTCTGGT | + |
|
Preference number: 6 (lower is better) Translates to: LILGLIDVNFDP*VQMLSSPLLSG Trigger: ACCAGAAAGTAGAGGACTGGACAACATCTGGACCAAGGGATCAAAATTAACATCAATAAGTCCTAGAATCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000549013.1 ENST00000653605.1 |
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| CDS CAA 72 bp | GTGGCCTTTGTTGTGATTTCTCCTTTGCACATGCTTTaGCCTTTATACCAATTACCATTGCTGTTACATCAG | + |
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Preference number: 6 (lower is better) Translates to: VAFVVISPLHML*PLYQLPLLLHQ Trigger: CTGATGTAACAGCAATGGTAATTGGTATAAAGGCAAAAGCATGTGCAAAGGAGAAATCACAACAAAGGCCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000549013.1 ENST00000653605.1 |
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