Pregenerated sensors for LINC02277 (Homo sapiens)
Ensembl gene IDs: ENSG00000258487Ensembl transcript IDs: ENST00000553386.1, ENST00000556472.1, ENST00000653326.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCCAGGGTACCTCTCTGCTGCATCCTGAGAGGCCCGTGTAGAGCATaGCCTGCTGCATGCATGGTACAATTCTGCCGCTCTCTTGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: SRVPLCCILRGPCRA*PAACMVQFCRSLVP Trigger: AGGAACAAGAGAGCGGCAGAATTGTACCATGCATGCAGCAGGCCATGCTCTACACGGGCCTCTCAGGATGCAGCAGAGAGGTACCCTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553386.1 |
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| CDS CCA 90 bp | GTAGAAGCAACTCTCTGCTGCATCCTGAGAGGCCCGTGTAGAGCATaGCCTGCTGCATGCATGGTACAATTCTGCCGCTCTCTTGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: VEATLCCILRGPCRA*PAACMVQFCRSLVP Trigger: AGGAACAAGAGAGCGGCAGAATTGTACCATGCATGCAGCAGGCCATGCTCTACACGGGCCTCTCAGGATGCAGCAGAGAGTTGCTTCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556472.1 |
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| CDS CCA 90 bp | GCCTGTATATCTCTCTGCTGCATCCTGAGAGGCCCGTGTAGAGCATaGCCTGCTGCATGCATGGTACAATTCTGCCGCTCTCTTGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: ACISLCCILRGPCRA*PAACMVQFCRSLVP Trigger: AGGAACAAGAGAGCGGCAGAATTGTACCATGCATGCAGCAGGCCATGCTCTACACGGGCCTCTCAGGATGCAGCAGAGAGATATACAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653326.1 |
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| CDS TCA 90 bp | TATTCCAAAAAGCCTGTATATCCAGGGTACCTCTCTGCTGCATCCTaGGAGGCCCGTGTAGAGCATGGCCTGCTGCATGCATGGTACAAT | + |
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Preference number: 5 (lower is better) Translates to: YSKKPVYPGYLSAAS*EARVEHGLLHAWYN Trigger: ATTGTACCATGCATGCAGCAGGCCATGCTCTACACGGGCCTCTCAGGATGCAGCAGAGAGGTACCCTGGATATACAGGCTTTTTGGAATA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000553386.1 |
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| CDS CCA 90 bp | CAGTCTTCAGAGATTCTCCTCCAATACCACCTAGCTTCATTTTTCTaGCCTCTACACTCACATCAGTATTCCAAAAAGCCTGTATATCCA | + |
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Preference number: 5 (lower is better) Translates to: QSSEILLQYHLASFF*PLHSHQYSKKPVYP Trigger: TGGATATACAGGCTTTTTGGAATACTGATGTGAGTGTAGAGGCCAGAAAAATGAAGCTAGGTGGTATTGGAGGAGAATCTCTGAAGACTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000553386.1 |
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| CDS CCA 90 bp | CAGTCTTCAGAGATTCTCCTCCAATACCACCTAGCTTCATTTTTCTaGCCTCTACACTCACATCAGTATTCCAAAAAGCCTGTATATCTC | + |
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Preference number: 5 (lower is better) Translates to: QSSEILLQYHLASFF*PLHSHQYSKKPVYL Trigger: GAGATATACAGGCTTTTTGGAATACTGATGTGAGTGTAGAGGCCAGAAAAATGAAGCTAGGTGGTATTGGAGGAGAATCTCTGAAGACTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000653326.1 |
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| CDS TCA 90 bp | TGTAGAAAACAGTTACACATTCATCTTAACTTGTTGTCAGCCTACTaGGAGCAGTCTTCAGAGATTCTCCTCCAATACCACCTAGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: CRKQLHIHLNLLSAY*EQSSEILLQYHLAS Trigger: TGAAGCTAGGTGGTATTGGAGGAGAATCTCTGAAGACTGCTCTCAGTAGGCTGACAACAAGTTAAGATGAATGTGTAACTGTTTTCTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000553386.1 ENST00000653326.1 |
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| CDS CCA 72 bp | CCTCTCTGCTGCATCCTGAGAGGCCCGTGTAGAGCATaGCCTGCTGCATGCATGGTACAATTCTGCCGCTCT | + |
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Preference number: 6 (lower is better) Translates to: PLCCILRGPCRA*PAACMVQFCRS Trigger: AGAGCGGCAGAATTGTACCATGCATGCAGCAGGCCATGCTCTACACGGGCCTCTCAGGATGCAGCAGAGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553386.1 |
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| CDS TCA 72 bp | AAGCCTGTATATCCAGGGTACCTCTCTGCTGCATCCTaGGAGGCCCGTGTAGAGCATGGCCTGCTGCATGCA | + |
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Preference number: 6 (lower is better) Translates to: KPVYPGYLSAAS*EARVEHGLLHA Trigger: TGCATGCAGCAGGCCATGCTCTACACGGGCCTCTCAGGATGCAGCAGAGAGGTACCCTGGATATACAGGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553386.1 |
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| CDS CCA 72 bp | ACTCTCTGCTGCATCCTGAGAGGCCCGTGTAGAGCATaGCCTGCTGCATGCATGGTACAATTCTGCCGCTCT | + |
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Preference number: 6 (lower is better) Translates to: TLCCILRGPCRA*PAACMVQFCRS Trigger: AGAGCGGCAGAATTGTACCATGCATGCAGCAGGCCATGCTCTACACGGGCCTCTCAGGATGCAGCAGAGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556472.1 |
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| CDS CCA 72 bp | TCTCTCTGCTGCATCCTGAGAGGCCCGTGTAGAGCATaGCCTGCTGCATGCATGGTACAATTCTGCCGCTCT | + |
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Preference number: 6 (lower is better) Translates to: SLCCILRGPCRA*PAACMVQFCRS Trigger: AGAGCGGCAGAATTGTACCATGCATGCAGCAGGCCATGCTCTACACGGGCCTCTCAGGATGCAGCAGAGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653326.1 |
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| CDS GCA 72 bp | TTCCAAAAAGCCTGTATATCCAGGGTACCTCTCTGCTaGATCCTGAGAGGCCCGTGTAGAGCATGGCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: FQKACISRVPLC*ILRGPCRAWPA Trigger: AGCAGGCCATGCTCTACACGGGCCTCTCAGGATGCAGCAGAGAGGTACCCTGGATATACAGGCTTTTTGGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000553386.1 |
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| CDS GCA 72 bp | GTATTCCAAAAAGCCTGTATATCCAGGGTACCTCTCTaGTGCATCCTGAGAGGCCCGTGTAGAGCATGGCCT | + |
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Preference number: 6 (lower is better) Translates to: VFQKACISRVPL*CILRGPCRAWP Trigger: AGGCCATGCTCTACACGGGCCTCTCAGGATGCAGCAGAGAGGTACCCTGGATATACAGGCTTTTTGGAATAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000553386.1 |
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| CDS TCA 72 bp | TATTCCAAAAAGCCTGTATATCTCTCTGCTGCATCCTaGGAGGCCCGTGTAGAGCATGGCCTGCTGCATGCA | + |
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Preference number: 6 (lower is better) Translates to: YSKKPVYLSAAS*EARVEHGLLHA Trigger: TGCATGCAGCAGGCCATGCTCTACACGGGCCTCTCAGGATGCAGCAGAGAGATATACAGGCTTTTTGGAATA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000653326.1 |
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| CDS CAA 72 bp | GGCCTGCTGCATGCATGGTACAATTCTGCCGCTCTCTaGTTCCTCTGTGTTTATCCAATCAATCCAGACTAT | + |
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Preference number: 6 (lower is better) Translates to: GLLHAWYNSAAL*FLCVYPINPDY Trigger: ATAGTCTGGATTGATTGGATAAACACAGAGGAACAAGAGAGCGGCAGAATTGTACCATGCATGCAGCAGGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000553386.1 ENST00000556472.1 ENST00000653326.1 |
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| CDS TCA 72 bp | CAGTTACACATTCATCTTAACTTGTTGTCAGCCTACTaGGAGCAGTCTTCAGAGATTCTCCTCCAATACCAC | + |
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Preference number: 6 (lower is better) Translates to: QLHIHLNLLSAY*EQSSEILLQYH Trigger: GTGGTATTGGAGGAGAATCTCTGAAGACTGCTCTCAGTAGGCTGACAACAAGTTAAGATGAATGTGTAACTG 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000553386.1 ENST00000653326.1 |
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| CDS CCA 72 bp | GAGATTCTCCTCCAATACCACCTAGCTTCATTTTTCTaGCCTCTACACTCACATCAGTATTCCAAAAAGCCT | + |
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Preference number: 6 (lower is better) Translates to: EILLQYHLASFF*PLHSHQYSKKP Trigger: AGGCTTTTTGGAATACTGATGTGAGTGTAGAGGCCAGAAAAATGAAGCTAGGTGGTATTGGAGGAGAATCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000553386.1 ENST00000653326.1 |
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| CDS GCA 72 bp | GTTTTCTCTTCTGCAGTTTCAGTTATCTACACCAACTaGTTTCATGAGTCTAGACTTCAATTTTCCTGTGAT | + |
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Preference number: 6 (lower is better) Translates to: VFSSAVSVIYTN*FHESRLQFSCD Trigger: ATCACAGGAAAATTGAAGTCTAGACTCATGAAAGCAGTTGGTGTAGATAACTGAAACTGCAGAAGAGAAAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000556472.1 |
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| CDS CAA 72 bp | TGTTCCTCTGTGTTTATCCAATCAATCCAGACTATATaGTCTAGGCCTTCATTAAGAGACACAAGAAATCAC | + |
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Preference number: 6 (lower is better) Translates to: CSSVFIQSIQTI*SRPSLRDTRNH Trigger: GTGATTTCTTGTGTCTCTTAATGAAGGCCTAGACAATATAGTCTGGATTGATTGGATAAACACAGAGGAACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000553386.1 ENST00000556472.1 ENST00000653326.1 |
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