Pregenerated sensors for LINC02267 (Homo sapiens)

Ensembl gene IDs: ENSG00000248510

Ensembl transcript IDs: ENST00000513393.1, ENST00000522173.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CTTGCATCATACCAGTGTTCTCGGCTCTGGATCCTTGTGACTAGCTaGAAACAACCAGATGAGCTTTGTCTGAATGTAAACAACTCCAAA	+
Preference number: 5 (lower is better) Translates to: LASYQCSRLWILVTS*KQPDELCLNVNNSK Trigger: TTTGGAGTTGTTTACATTCAGACAAAGCTCATCTGGTTGTTTGCAGCTAGTCACAAGGATCCAGAGCCGAGAACACTGGTATGATGCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513393.1
CDS GCA 90 bp	AATGGAGAAAAGCAAGGCAGGACAATGGGCCACCTTGTGACTAGCTaGAAACAACCAGATGAGCTTTGTCTGAATGTAAACAACTCCAAA	+
Preference number: 5 (lower is better) Translates to: NGEKQGRTMGHLVTS*KQPDELCLNVNNSK Trigger: TTTGGAGTTGTTTACATTCAGACAAAGCTCATCTGGTTGTTTGCAGCTAGTCACAAGGTGGCCCATTGTCCTGCCTTGCTTTTCTCCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522173.1
CDS CCA 72 bp	TTGTGCAGCCATCTCCCCCACCTAATATTAGAAAGGTaGCATCATCCACACTTAGCATTCATTTCCCACATC	+
Preference number: 6 (lower is better) Translates to: LCSHLPHLILER*HHPHLAFISHI Trigger: GATGTGGGAAATGAATGCTAAGTGTGGATGATGCCACCTTTCTAATATTAGGTGGGGGAGATGGCTGCACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000513393.1
CDS CCA 72 bp	CATGTTAGTGATAGAGATAAGTTTTCAAGCTTGAATTaGCTGGCCACAAATCCTTGCATCATACCAGTGTTC	+
Preference number: 6 (lower is better) Translates to: HVSDRDKFSSLN*LATNPCIIPVF Trigger: GAACACTGGTATGATGCAAGGATTTGTGGCCAGCCAATTCAAGCTTGAAAACTTATCTCTATCACTAACATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513393.1
CDS CAA 72 bp	GCATATGGTATGAAGCAGGGGTCTGATTTAATTCTTTaGCAGTGGATATCCAGTGGTTCTATAACTATTAAT	+
Preference number: 6 (lower is better) Translates to: AYGMKQGSDLIL*QWISSGSITIN Trigger: ATTAATAGTTATAGAACCACTGGATATCCACTGCAAAAGAATTAAATCAGACCCCTGCTTCATACCATATGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000513393.1
CDS CAA 72 bp	CCATTTATCAGTGATGGAGATCTGGGCCGTTTCCACTaGTTAACTATTATTTATGATGCTGATATGAGTATT	+
Preference number: 6 (lower is better) Translates to: PFISDGDLGRFH*LTIIYDADMSI Trigger: AATACTCATATCAGCATCATAAATAATAGTTAACAAGTGGAAACGGCCCAGATCTCCATCACTGATAAATGG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000513393.1
CDS TCA 72 bp	ATATTAAGTTTAGGTCTTAGCCAAAGTTTCGGTCTATaGCTTGGTAATTCTGATCCTAGGTATCTCTATTCT	+
Preference number: 6 (lower is better) Translates to: ILSLGLSQSFGL*LGNSDPRYLYS Trigger: AGAATAGAGATACCTAGGATCAGAATTACCAAGTCATAGACCGAAACTTTGGCTAAGACCTAAACTTAATAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522173.1
CDS CAA 72 bp	AGACTATTATCCCCATTAAATGTTCTTACACCCTTCTaGAATCACACTCCAGTTTTACAGACAAATAAACAG	+
Preference number: 6 (lower is better) Translates to: RLLSPLNVLTPF*NHTPVLQTNKQ Trigger: CTGTTTATTTGTCTGTAAAACTGGAGTGTGATTCAAGAAGGGTGTAAGAACATTTAATGGGGATAATAGTCT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000513393.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu