Pregenerated sensors for LINC02260 (Homo sapiens)
Ensembl gene IDs: ENSG00000250456Ensembl transcript IDs: ENST00000508484.1
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAGAGAGAGAAAAGCATTGCCTGTGGCAAGGTGGGGAAGGTGAAATaGTCAGGGAGGCCACAGAAAGACCCACCTATTGCAGCGACACTG | + |
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Preference number: 5 (lower is better) Translates to: EREKSIACGKVGKVK*SGRPQKDPPIAATL Trigger: CAGTGTCGCTGCAATAGGTGGGTCTTTCTGTGGCCTCCCTGATCATTTCACCTTCCCCACCTTGCCACAGGCAATGCTTTTCTCTCTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS TCA 90 bp | GAAACTCGGAGAGCTCAAAACACAAATCCACGGAGCTCCAAAATCTaGGACAAGTGGGTCCTGCAGGTAGCTTGCGTGTTCACTCAGCCC | + |
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Preference number: 5 (lower is better) Translates to: ETRRAQNTNPRSSKI*DKWVLQVACVFTQP Trigger: GGGCTGAGTGAACACGCAAGCTACCTGCAGGACCCACTTGTCTCAGATTTTGGAGCTCCGTGGATTTGTGTTTTGAGCTCTCCGAGTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS TCA 90 bp | GAAAGGAGAGAGAGAAAAGCATTGCCTGTGGCAAGGTGGGGAAGGTaGAATGATCAGGGAGGCCACAGAAAGACCCACCTATTGCAGCGA | + |
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Preference number: 5 (lower is better) Translates to: ERRERKALPVARWGR*NDQGGHRKTHLLQR Trigger: TCGCTGCAATAGGTGGGTCTTTCTGTGGCCTCCCTGATCATTTCACCTTCCCCACCTTGCCACAGGCAATGCTTTTCTCTCTCTCCTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS GCA 90 bp | CCTTTTAGGGAAGAAAAAGCTTCCCATGTCCCACGATCCTGTACATaGCTAATCCTGTCACCCACAGCCATCAGCAAAGAGTGCAAGGCA | + |
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Preference number: 5 (lower is better) Translates to: PFREEKASHVPRSCT*LILSPTAISKECKA Trigger: TGCCTTGCACTCTTTGCTGATGGCTGTGGGTGACAGGATTAGGCATGTACAGGATCGTGGGACATGGGAAGCTTTTTCTTCCCTAAAAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS TCA 90 bp | GACATTCATCAGAACTGTGGGCACTTGGATCAAAACGCTGGAGGGTaGGATTGGAGGAGGGGCAGTGAGATTGACCTCAAATATGTTCAT | + |
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Preference number: 5 (lower is better) Translates to: DIHQNCGHLDQNAGG*DWRRGSEIDLKYVH Trigger: ATGAACATATTTGAGGTCAATCTCACTGCCCCTCCTCCAATCTCACCCTCCAGCGTTTTGATCCAAGTGCCCACAGTTCTGATGAATGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS TCA 90 bp | CACCTGTTCCTTTCTCACCCAGTCAGACGTAAGAGGCCTCTAACTTaGTCCAAGCCAGTTAATTTCTGGATCAAATCCATTCCTGGACCC | + |
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Preference number: 5 (lower is better) Translates to: HLFLSHPVRRKRPLT*SKPVNFWIKSIPGP Trigger: GGGTCCAGGAATGGATTTGATCCAGAAATTAACTGGCTTGGATCAAGTTAGAGGCCTCTTACGTCTGACTGGGTGAGAAAGGAACAGGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS GCA 90 bp | GCAAGGCAGATTATGCCAAAGAGAACAGCAATTGACATGCTGGAGTaGCAAACCCTTTCTCAGCTAAAAGGGACTTTACCAAGAGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: ARQIMPKRTAIDMLE*QTLSQLKGTLPRAL Trigger: GAGGGCTCTTGGTAAAGTCCCTTTTAGCTGAGAAAGGGTTTGGCACTCCAGCATGTCAATTGCTGTTCTCTTTGGCATAATCTGCCTTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS GCA 90 bp | AATCCTGTCACCCACAGCCATCAGCAAAGAGTGCAAGGCAGATTATaGCAAAGAGAACAGCAATTGACATGCTGGAGTGCCAAACCCTTT | + |
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Preference number: 5 (lower is better) Translates to: NPVTHSHQQRVQGRL*QREQQLTCWSAKPF Trigger: AAAGGGTTTGGCACTCCAGCATGTCAATTGCTGTTCTCTTTGGCATAATCTGCCTTGCACTCTTTGCTGATGGCTGTGGGTGACAGGATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS TCA 90 bp | TTTTTACCGTTCATTCAACCATTTGCACAGAGAGAGAGAGAAGCCTaGAATCTAACTGGTAAGAAATTCTTAACTTTTTGCCGGGATGCC | + |
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Preference number: 5 (lower is better) Translates to: FLPFIQPFAQREREA*NLTGKKFLTFCRDA Trigger: GGCATCCCGGCAAAAAGTTAAGAATTTCTTACCAGTTAGATTTCAGGCTTCTCTCTCTCTCTGTGCAAATGGTTGAATGAACGGTAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS TCA 72 bp | GAGAGAAAAGCATTGCCTGTGGCAAGGTGGGGAAGGTaGAATGATCAGGGAGGCCACAGAAAGACCCACCTA | + |
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Preference number: 6 (lower is better) Translates to: ERKALPVARWGR*NDQGGHRKTHL Trigger: TAGGTGGGTCTTTCTGTGGCCTCCCTGATCATTTCACCTTCCCCACCTTGCCACAGGCAATGCTTTTCTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS GCA 72 bp | GAAATGATCAGGGAGGCCACAGAAAGACCCACCTATTaGAGCGACACTGAAAAGTTCAGGCCGCTGCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: EMIREATERPTY*SDTEKFRPLLL Trigger: AAGAAGCAGCGGCCTGAACTTTTCAGTGTCGCTGCAATAGGTGGGTCTTTCTGTGGCCTCCCTGATCATTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS CCA 72 bp | AGCTTGCCTTTGACATTCATCAGAACTGTGGGCACTTaGATCAAAACGCTGGAGGGTGAGATTGGAGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: SLPLTFIRTVGT*IKTLEGEIGGG Trigger: CCCTCCTCCAATCTCACCCTCCAGCGTTTTGATCCAAGTGCCCACAGTTCTGATGAATGTCAAAGGCAAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS TCA 72 bp | AGAGCTCAAAACACAAATCCACGGAGCTCCAAAATCTaGGACAAGTGGGTCCTGCAGGTAGCTTGCGTGTTC | + |
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Preference number: 6 (lower is better) Translates to: RAQNTNPRSSKI*DKWVLQVACVF Trigger: GAACACGCAAGCTACCTGCAGGACCCACTTGTCTCAGATTTTGGAGCTCCGTGGATTTGTGTTTTGAGCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS GCA 72 bp | GAAGAAAAAGCTTCCCATGTCCCACGATCCTGTACATaGCTAATCCTGTCACCCACAGCCATCAGCAAAGAG | + |
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Preference number: 6 (lower is better) Translates to: EEKASHVPRSCT*LILSPTAISKE Trigger: CTCTTTGCTGATGGCTGTGGGTGACAGGATTAGGCATGTACAGGATCGTGGGACATGGGAAGCTTTTTCTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS CAA 90 bp | GACCCACCTATTGCAGCGACACTGAAAAGTTCAGGCCGCTGCTTCTaGGTACCAAATGGATCTTTTCCAACGGTCCCATCATCTCTAAAG | + |
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Preference number: 6 (lower is better) Translates to: DPPIAATLKSSGRCF*VPNGSFPTVPSSLK Trigger: CTTTAGAGATGATGGGACCGTTGGAAAAGATCCATTTGGTACCAAGAAGCAGCGGCCTGAACTTTTCAGTGTCGCTGCAATAGGTGGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS CAA 72 bp | ATTGCAGCGACACTGAAAAGTTCAGGCCGCTGCTTCTaGGTACCAAATGGATCTTTTCCAACGGTCCCATCA | + |
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Preference number: 6 (lower is better) Translates to: IAATLKSSGRCF*VPNGSFPTVPS Trigger: TGATGGGACCGTTGGAAAAGATCCATTTGGTACCAAGAAGCAGCGGCCTGAACTTTTCAGTGTCGCTGCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS CAA 72 bp | ATTTTAGCCAGGCCAAACGGCTGGTATTTCTGGCTTTaGAACTCTACCAAAGGTAACCTCCCAGGTGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: ILARPNGWYFWL*NSTKGNLPGAQ Trigger: CTGAGCACCTGGGAGGTTACCTTTGGTAGAGTTCAAAAGCCAGAAATACCAGCCGTTTGGCCTGGCTAAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS TCA 72 bp | GAGTGCAAGGCAGATTATGCCAAAGAGAACAGCAATTaGCATGCTGGAGTGCCAAACCCTTTCTCAGCTAAA | + |
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Preference number: 6 (lower is better) Translates to: ECKADYAKENSN*HAGVPNPFSAK Trigger: TTTAGCTGAGAAAGGGTTTGGCACTCCAGCATGTCAATTGCTGTTCTCTTTGGCATAATCTGCCTTGCACTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS TCA 72 bp | GTTTCAACCTGTGGTCTCTGGGCAAGGTGGTCTCCCTaGGTAATAGAAAACATAAGAAAGGGAAAGGAGAGA | + |
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Preference number: 6 (lower is better) Translates to: VSTCGLWARWSP*VIENIRKGKER Trigger: TCTCTCCTTTCCCTTTCTTATGTTTTCTATTACTCAGGGAGACCACCTTGCCCAGAGACCACAGGTTGAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS CCA 72 bp | CCCAGTCCAGTTTCTGTTGCGACTCCAAACCCAGTTTaGATCAGAAATTTGTTCAAAGAAACTCGGAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: PSPVSVATPNPV*IRNLFKETRRA Trigger: AGCTCTCCGAGTTTCTTTGAACAAATTTCTGATCCAAACTGGGTTTGGAGTCGCAACAGAAACTGGACTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS CAA 72 bp | GGATCAAATCCATTCCTGGACCCAGTCCAGTTTCTGTaGCGACTCCAAACCCAGTTTGGATCAGAAATTTGT | + |
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Preference number: 6 (lower is better) Translates to: GSNPFLDPVQFL*RLQTQFGSEIC Trigger: ACAAATTTCTGATCCAAACTGGGTTTGGAGTCGCAACAGAAACTGGACTGGGTCCAGGAATGGATTTGATCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS CAA 72 bp | TGCCAGTTTTTATGTTTCTTAACTGGTTATTGGCTTTaGGGTGGAGCCCTTGGAAGAAGAGGGCCAGAAAGG | + |
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Preference number: 6 (lower is better) Translates to: CQFLCFLTGYWL*GGALGRRGPER Trigger: CCTTTCTGGCCCTCTTCTTCCAAGGGCTCCACCCAAAAGCCAATAACCAGTTAAGAAACATAAAAACTGGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS TCA 72 bp | CTTTCTCACCCAGTCAGACGTAAGAGGCCTCTAACTTaGTCCAAGCCAGTTAATTTCTGGATCAAATCCATT | + |
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Preference number: 6 (lower is better) Translates to: LSHPVRRKRPLT*SKPVNFWIKSI Trigger: AATGGATTTGATCCAGAAATTAACTGGCTTGGATCAAGTTAGAGGCCTCTTACGTCTGACTGGGTGAGAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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| CDS CAA 72 bp | ATTAAACTAAACGCAACTTACTTCATAGGCAGGGAATaGAACCCAGACCACCAGTATGAAAGAGCAAAGCCT | + |
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Preference number: 6 (lower is better) Translates to: IKLNATYFIGRE*NPDHQYERAKP Trigger: AGGCTTTGCTCTTTCATACTGGTGGTCTGGGTTCAATTCCCTGCCTATGAAGTAAGTTGCGTTTAGTTTAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508484.1 |
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