Pregenerated sensors for LINC02257 (Homo sapiens)

Ensembl gene IDs: ENSG00000238042

Ensembl transcript IDs: ENST00000412445.1, ENST00000433576.5

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GTGATTCAGGGACTGCTCTATCGAGGCCTAAGAGGAAACCAGCTATaGAGAGAATTCAAAAGTAGAAAGCCCGGTGAAAGGTCTCTCAGG	+
Preference number: 5 (lower is better) Translates to: VIQGLLYRGLRGNQL*REFKSRKPGERSLR Trigger: CCTGAGAGACCTTTCACCGGGCTTTCTACTTTTGAATTCTCTCCATAGCTGGTTTCCTCTTAGGCCTCGATAGAGCAGTCCCTGAATCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412445.1 ENST00000433576.5
CDS CCA 72 bp	CAGGCTAAGAAGTCCCACAGTGTGCCATCTGCAAGCTaGAGACCCAGGAAAGCTGGTGATGTAATTCAGTCT	+
Preference number: 6 (lower is better) Translates to: QAKKSHSVPSAS*RPRKAGDVIQS Trigger: AGACTGAATTACATCACCAGCTTTCCTGGGTCTCCAGCTTGCAGATGGCACACTGTGGGACTTCTTAGCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433576.5
CDS TCA 72 bp	TGCATTCCAGCCAGGATGACAGTGCGAGACTCCACCTaGTTTAAAATTGGTGAGATGTTCCTTGGGCTAGTC	+
Preference number: 6 (lower is better) Translates to: CIPARMTVRDST*FKIGEMFLGLV Trigger: GACTAGCCCAAGGAACATCTCACCAATTTTAAATCAGGTGGAGTCTCGCACTGTCATCCTGGCTGGAATGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412445.1
CDS TCA 72 bp	TGTGCCATCTGCAAGCTGGAGACCCAGGAAAGCTGGTaGTGTAATTCAGTCTTAGAAGGCCTATCTTGTGAC	+
Preference number: 6 (lower is better) Translates to: CAICKLETQESW*CNSVLEGLSCD Trigger: GTCACAAGATAGGCCTTCTAAGACTGAATTACATCACCAGCTTTCCTGGGTCTCCAGCTTGCAGATGGCACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433576.5
CDS TCA 72 bp	ATCCCTAGAGTAAGGGGCAATCAATGGGTGCTTCAATaGTTCTGCAGGCTAAGAAGTCCCACAGTGTGCCAT	+
Preference number: 6 (lower is better) Translates to: IPRVRGNQWVLQ*FCRLRSPTVCH Trigger: ATGGCACACTGTGGGACTTCTTAGCCTGCAGAATCATTGAAGCACCCATTGATTGCCCCTTACTCTAGGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433576.5
CDS CCA 72 bp	GGACTGCTCTATCGAGGCCTAAGAGGAAACCAGCTATaGAGAGAATTCAAAAGTAGAAAGCCCGGTGAAAGG	+
Preference number: 6 (lower is better) Translates to: GLLYRGLRGNQL*REFKSRKPGER Trigger: CCTTTCACCGGGCTTTCTACTTTTGAATTCTCTCCATAGCTGGTTTCCTCTTAGGCCTCGATAGAGCAGTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412445.1 ENST00000433576.5

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu